Wall clock time and date at job start Tue Mar 31 2020 05:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86799 * 119.99886 * 2 1 4 4 H 1.48498 * 109.47071 * 269.99606 * 3 2 1 5 5 H 1.48496 * 109.47188 * 29.99572 * 3 2 1 6 6 H 1.48497 * 109.46886 * 149.99873 * 3 2 1 7 7 C 1.38658 * 119.99703 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00477 * 0.02562 * 7 2 1 9 9 O 1.34813 * 119.99491 * 179.97438 * 7 2 1 10 10 C 1.35647 * 116.99984 * 184.94406 * 9 7 2 11 11 C 1.38770 * 120.13794 * 354.34573 * 10 9 7 12 12 C 1.38094 * 120.05109 * 179.97438 * 11 10 9 13 13 C 1.38459 * 120.33765 * 359.97438 * 12 11 10 14 14 C 1.37992 * 120.27467 * 0.02562 * 13 12 11 15 15 C 1.39330 * 119.94266 * 0.02562 * 14 13 12 16 16 C 1.48215 * 120.16629 * 179.97438 * 15 14 13 17 17 C 1.39885 * 119.93644 * 359.97438 * 16 15 14 18 18 N 1.31761 * 120.50953 * 179.97438 * 17 16 15 19 19 C 1.32739 * 120.04342 * 0.02562 * 18 17 16 20 20 N 1.37430 * 133.25581 * 179.97438 * 19 18 17 21 21 H 0.96999 * 125.01671 * 0.02562 * 20 19 18 22 22 C 1.36742 * 109.96148 * 180.02562 * 20 19 18 23 23 C 1.34335 * 109.98244 * 0.02562 * 22 20 19 24 24 C 1.41101 * 119.63099 * 0.02562 * 19 18 17 25 25 N 1.32757 * 119.93817 * 179.71899 * 16 15 14 26 26 H 0.96995 * 120.00117 * 0.02562 * 1 2 3 27 27 H 1.08004 * 119.97465 * 359.97438 * 11 10 9 28 28 H 1.08000 * 119.83155 * 180.28157 * 12 11 10 29 29 H 1.07995 * 119.86213 * 179.97438 * 13 12 11 30 30 H 1.07998 * 120.02813 * 180.02562 * 14 13 12 31 31 H 1.08001 * 119.74104 * 359.97438 * 17 16 15 32 32 H 1.08008 * 125.01032 * 180.02562 * 22 20 19 33 33 H 1.08005 * 126.51776 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4971 2.0464 -1.4001 5 1 1.4469 2.6527 0.6999 6 1 3.5470 1.4402 0.7001 7 6 2.0088 -1.2009 0.0005 8 1 1.4689 -2.1361 0.0005 9 8 3.3569 -1.2008 0.0000 10 6 3.9727 -2.4050 -0.1036 11 6 3.2250 -3.5738 -0.0849 12 6 3.8537 -4.7988 -0.1911 13 6 5.2308 -4.8694 -0.3170 14 6 5.9877 -3.7158 -0.3371 15 6 5.3654 -2.4738 -0.2298 16 6 6.1736 -1.2316 -0.2502 17 6 7.5647 -1.3058 -0.3770 18 7 8.2941 -0.2087 -0.3970 19 6 7.7105 0.9793 -0.2959 20 7 8.1910 2.2668 -0.2853 21 1 9.1265 2.5123 -0.3587 22 6 7.1556 3.1505 -0.1560 23 6 5.9911 2.4851 -0.0791 24 6 6.3076 1.0586 -0.1667 25 7 5.5754 -0.0503 -0.1532 26 1 -0.4850 0.8400 -0.0004 27 1 2.1505 -3.5255 0.0127 28 1 3.2679 -5.7060 -0.1807 29 1 5.7146 -5.8315 -0.3990 30 1 7.0614 -3.7756 -0.4359 31 1 8.0445 -2.2699 -0.4592 32 1 7.2587 4.2251 -0.1210 33 1 5.0081 2.9201 0.0266 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243580000.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:58 Heat of formation + Delta-G solvation = 99.158791 kcal Electronic energy + Delta-G solvation = -21069.750858 eV Core-core repulsion = 17869.744889 eV Total energy + Delta-G solvation = -3200.005969 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.090 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.56771 -39.34022 -38.03569 -36.46053 -34.00613 -32.39344 -31.70515 -29.92974 -29.13206 -28.21677 -25.35070 -24.19770 -23.53127 -21.33213 -20.98601 -20.50162 -18.49187 -17.86779 -17.36034 -16.89186 -15.79508 -15.23797 -15.21344 -14.60322 -14.14996 -13.99613 -13.83305 -13.70324 -13.19829 -13.00606 -12.59681 -12.42006 -12.28875 -12.00434 -11.43389 -11.13668 -11.07088 -10.93718 -10.73717 -10.68005 -9.92239 -9.43395 -9.01949 -8.82583 -8.38969 -8.23188 -7.83943 -7.15274 -6.41407 -4.03880 1.08067 1.15028 2.26610 2.37031 2.76000 2.78633 3.30673 3.36415 3.62936 4.16319 4.29942 4.37235 4.55083 4.64585 4.74133 4.85285 5.07274 5.15175 5.19971 5.38422 5.55334 5.64540 5.76458 5.89905 6.00291 6.18248 6.36910 6.45237 6.51008 6.67942 6.92527 7.08773 7.11529 7.25700 7.27566 7.57781 7.74987 7.83693 8.02069 8.38848 8.94414 9.60716 10.63877 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.012455 B = 0.009364 C = 0.005358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2247.474375 B = 2989.315655 C = 5224.429179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.068 3.932 3 Si 0.893 3.107 4 H -0.275 1.275 5 H -0.291 1.291 6 H -0.225 1.225 7 C -0.390 4.390 8 H 0.105 0.895 9 O -0.161 6.161 10 C 0.185 3.815 11 C -0.226 4.226 12 C -0.061 4.061 13 C -0.214 4.214 14 C -0.052 4.052 15 C -0.137 4.137 16 C 0.138 3.862 17 C 0.081 3.919 18 N -0.455 5.455 19 C 0.208 3.792 20 N -0.580 5.580 21 H 0.417 0.583 22 C 0.070 3.930 23 C -0.181 4.181 24 C 0.065 3.935 25 N -0.372 5.372 26 H 0.279 0.721 27 H 0.135 0.865 28 H 0.111 0.889 29 H 0.112 0.888 30 H 0.118 0.882 31 H 0.171 0.829 32 H 0.183 0.817 33 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.368 1.574 -0.476 14.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.137 4.137 3 Si 0.718 3.282 4 H -0.201 1.201 5 H -0.218 1.218 6 H -0.148 1.148 7 C -0.466 4.466 8 H 0.123 0.877 9 O -0.061 6.061 10 C 0.128 3.872 11 C -0.245 4.245 12 C -0.080 4.080 13 C -0.233 4.233 14 C -0.072 4.072 15 C -0.140 4.140 16 C -0.008 4.008 17 C -0.088 4.088 18 N -0.173 5.173 19 C -0.027 4.027 20 N -0.188 5.188 21 H 0.255 0.745 22 C -0.058 4.058 23 C -0.208 4.208 24 C -0.073 4.073 25 N -0.087 5.087 26 H 0.089 0.911 27 H 0.153 0.847 28 H 0.129 0.871 29 H 0.130 0.870 30 H 0.136 0.864 31 H 0.188 0.812 32 H 0.200 0.800 33 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 14.332 2.182 -0.453 14.505 hybrid contribution 0.400 0.717 -0.085 0.825 sum 14.732 2.899 -0.538 15.025 Atomic orbital electron populations 1.69663 1.05867 1.28714 1.46869 1.24493 0.94933 0.99279 0.94950 0.86348 0.81752 0.80594 0.79479 1.20103 1.21770 1.14802 1.20926 0.77553 0.96595 1.51520 0.87728 1.83848 1.21507 1.24583 1.76138 1.19081 0.90614 0.85843 0.91660 1.21272 1.01259 0.91759 1.10221 1.20910 0.94396 0.96715 0.95946 1.20515 0.93945 0.97176 1.11650 1.20660 0.98528 0.90732 0.97246 1.17397 0.89975 0.90274 1.16372 1.20502 0.91097 0.91806 0.97435 1.23393 0.91377 0.95858 0.98194 1.67096 1.39731 0.96166 1.14277 1.19223 0.91927 0.86592 1.04969 1.41287 1.09457 1.02663 1.65351 0.74513 1.21888 0.85818 0.95433 1.02664 1.21689 0.98603 0.89461 1.11026 1.20779 0.89298 0.94412 1.02813 1.68300 1.36859 0.96117 1.07448 0.91060 0.84692 0.87053 0.87024 0.86416 0.81165 0.79984 0.82922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.39 13.96 55.48 0.77 -24.61 16 2 C 0.07 1.92 5.49 -17.51 -0.10 1.83 16 3 Si 0.89 21.88 27.66 -169.99 -4.70 17.17 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 6 H -0.23 -5.46 5.85 56.52 0.33 -5.13 16 7 C -0.39 -11.01 9.95 30.89 0.31 -10.70 16 8 H 0.11 2.98 5.44 -52.49 -0.29 2.70 16 9 O -0.16 -4.27 6.44 0.42 0.00 -4.27 16 10 C 0.19 4.32 6.65 -38.72 -0.26 4.07 16 11 C -0.23 -4.80 9.16 -39.44 -0.36 -5.16 16 12 C -0.06 -1.06 10.03 -39.55 -0.40 -1.46 16 13 C -0.21 -3.38 10.03 -39.59 -0.40 -3.78 16 14 C -0.05 -0.86 9.42 -39.27 -0.37 -1.23 16 15 C -0.14 -2.78 5.89 -104.73 -0.62 -3.40 16 16 C 0.14 2.79 6.73 -82.75 -0.56 2.24 16 17 C 0.08 1.36 10.59 -16.97 -0.18 1.18 16 18 N -0.45 -7.78 10.50 -11.82 -0.12 -7.90 16 19 C 0.21 3.57 8.42 -155.49 -1.31 2.26 16 20 N -0.58 -7.19 6.05 -12.06 -0.07 -7.27 16 21 H 0.42 3.65 8.96 -40.82 -0.37 3.29 16 22 C 0.07 0.81 11.81 -16.74 -0.20 0.62 16 23 C -0.18 -2.98 10.72 -37.68 -0.40 -3.39 16 24 C 0.07 1.30 7.51 -83.05 -0.62 0.68 16 25 N -0.37 -8.41 7.97 -6.29 -0.05 -8.46 16 26 H 0.28 7.53 8.31 -40.82 -0.34 7.19 16 27 H 0.14 2.99 5.64 -52.48 -0.30 2.70 16 28 H 0.11 1.62 8.06 -52.49 -0.42 1.19 16 29 H 0.11 1.42 8.06 -52.49 -0.42 0.99 16 30 H 0.12 1.48 6.18 -52.49 -0.32 1.16 16 31 H 0.17 2.19 6.17 -52.49 -0.32 1.87 16 32 H 0.18 1.17 8.06 -52.48 -0.42 0.75 16 33 H 0.15 2.51 6.54 -52.48 -0.34 2.16 16 LS Contribution 286.48 15.07 4.32 4.32 Total: -1.00 -33.51 286.48 -7.73 -41.24 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -2.41 Total: 6.00 kcal Atomic # 6 Polarization: -10.77 SS G_CDS: -5.46 Total: -16.23 kcal Atomic # 7 Polarization: -48.77 SS G_CDS: 0.53 Total: -48.24 kcal Atomic # 8 Polarization: -4.27 SS G_CDS: 0.00 Total: -4.27 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.70 Total: 17.17 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -33.51 -7.73 -41.24 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243580000.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.401 kcal (2) G-P(sol) polarization free energy of solvation -33.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds