Wall clock time and date at job start Tue Mar 31 2020 05:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00451 * 2 1 4 4 H 1.48500 * 109.47143 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47164 * 300.00025 * 3 2 1 6 6 H 1.48497 * 109.47021 * 60.00265 * 3 2 1 7 7 C 1.38712 * 119.99555 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99912 * 179.97438 * 7 2 1 9 9 O 1.34792 * 120.00218 * 0.02562 * 7 2 1 10 10 C 1.35601 * 117.00402 * 185.05784 * 9 7 2 11 11 C 1.39122 * 119.92150 * 354.44453 * 10 9 7 12 12 C 1.37679 * 120.07499 * 180.02562 * 11 10 9 13 13 C 1.39756 * 119.92336 * 359.97438 * 12 11 10 14 14 C 1.47722 * 120.07448 * 180.02562 * 13 12 11 15 15 C 1.40387 * 120.72119 * 310.02351 * 14 13 12 16 16 C 1.35695 * 120.24324 * 179.97438 * 15 14 13 17 17 N 1.34616 * 121.69896 * 0.06158 * 16 15 14 18 18 H 0.97003 * 119.52482 * 180.02562 * 17 16 15 19 19 C 1.36969 * 120.94074 * 359.91234 * 17 16 15 20 20 N 1.32902 * 134.07285 * 179.74014 * 19 17 16 21 21 C 1.32683 * 108.72913 * 179.97438 * 20 19 17 22 22 N 1.31688 * 110.23694 * 0.37169 * 21 20 19 23 23 C 1.34312 * 108.21204 * 359.77725 * 22 21 20 24 24 C 1.39754 * 119.84949 * 0.27585 * 13 12 11 25 25 C 1.37687 * 119.92324 * 359.44541 * 24 13 12 26 26 H 0.97008 * 119.99626 * 359.97438 * 1 2 3 27 27 H 1.08003 * 119.96321 * 0.02562 * 11 10 9 28 28 H 1.08008 * 120.03776 * 180.02562 * 12 11 10 29 29 H 1.07999 * 119.88075 * 359.97396 * 15 14 13 30 30 H 1.07998 * 119.15247 * 180.02562 * 16 15 14 31 31 H 1.08007 * 124.88395 * 180.16846 * 21 20 19 32 32 H 1.08004 * 120.03726 * 179.70480 * 24 13 12 33 33 H 1.07999 * 119.96212 * 180.29855 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3964 -1.2125 6 1 1.8906 2.3963 1.2125 7 6 2.0086 -1.2013 -0.0005 8 1 3.0886 -1.2014 -0.0010 9 8 1.3346 -2.3686 -0.0016 10 6 2.0689 -3.5037 0.1045 11 6 3.4584 -3.4351 0.0913 12 6 4.2070 -4.5856 0.1982 13 6 3.5696 -5.8233 0.3206 14 6 4.3696 -7.0597 0.4361 15 6 5.4061 -7.3307 -0.4711 16 6 6.1352 -8.4693 -0.3556 17 7 5.8944 -9.3678 0.6174 18 1 6.4354 -10.1712 0.6708 19 6 4.8979 -9.1627 1.5344 20 7 4.4398 -9.8552 2.5722 21 6 3.4402 -9.1812 3.1263 22 7 3.2259 -8.0610 2.4678 23 6 4.1087 -7.9922 1.4579 24 6 2.1736 -5.8890 0.3282 25 6 1.4311 -4.7340 0.2267 26 1 -0.4850 0.8401 0.0004 27 1 3.9503 -2.4782 -0.0029 28 1 5.2857 -4.5316 0.1884 29 1 5.6241 -6.6304 -1.2638 30 1 6.9288 -8.6598 -1.0629 31 1 2.8803 -9.5061 3.9908 32 1 1.6779 -6.8444 0.4178 33 1 0.3523 -4.7836 0.2373 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243591926.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:35 Heat of formation + Delta-G solvation = 77.271930 kcal Electronic energy + Delta-G solvation = -20093.753294 eV Core-core repulsion = 16892.798240 eV Total energy + Delta-G solvation = -3200.955055 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.090 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.04844 -40.82372 -39.69392 -38.43583 -35.17465 -34.20727 -32.00526 -31.42553 -30.95205 -29.77776 -27.48361 -25.28316 -24.13720 -23.33212 -22.89333 -21.79079 -19.92942 -19.02098 -18.56596 -18.07628 -18.00041 -16.78471 -16.54216 -16.29337 -16.13338 -15.58706 -15.30280 -14.88264 -14.66085 -14.39860 -13.96945 -13.91258 -13.72728 -13.57121 -13.07283 -12.77644 -12.64750 -12.37893 -12.07595 -11.74176 -11.30537 -11.19175 -10.82379 -10.38279 -9.88675 -9.60135 -9.32726 -8.81100 -8.49994 -6.17331 -0.99531 0.52715 0.57011 0.75551 1.37295 1.45773 1.51023 1.56210 2.16948 2.41788 2.57220 2.81596 3.11222 3.30317 3.43289 3.51245 3.74523 3.83211 4.04057 4.11320 4.15124 4.42044 4.50473 4.60906 4.71781 4.88693 5.04124 5.10652 5.19720 5.24200 5.47500 5.59698 5.61833 5.75312 5.80268 5.98796 6.07244 6.13883 6.28361 6.94056 7.45317 7.72122 8.72960 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.033296 B = 0.003592 C = 0.003398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.741374 B = 7792.567246 C = 8238.170724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.022 4.022 3 Si 1.022 2.978 4 H -0.245 1.245 5 H -0.267 1.267 6 H -0.272 1.272 7 C -0.416 4.416 8 H 0.111 0.889 9 O -0.223 6.223 10 C 0.133 3.867 11 C -0.242 4.242 12 C -0.028 4.028 13 C -0.163 4.163 14 C 0.149 3.851 15 C -0.215 4.215 16 C 0.211 3.789 17 N -0.474 5.474 18 H 0.443 0.557 19 C 0.197 3.803 20 N -0.585 5.585 21 C 0.189 3.811 22 N -0.562 5.562 23 C -0.057 4.057 24 C -0.023 4.023 25 C -0.210 4.210 26 H 0.274 0.726 27 H 0.134 0.866 28 H 0.161 0.839 29 H 0.196 0.804 30 H 0.264 0.736 31 H 0.210 0.790 32 H 0.119 0.881 33 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.070 -15.478 -5.309 25.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.220 4.220 3 Si 0.841 3.159 4 H -0.168 1.168 5 H -0.192 1.192 6 H -0.197 1.197 7 C -0.492 4.492 8 H 0.128 0.872 9 O -0.129 6.129 10 C 0.081 3.919 11 C -0.261 4.261 12 C -0.046 4.046 13 C -0.164 4.164 14 C 0.141 3.859 15 C -0.239 4.239 16 C 0.068 3.932 17 N -0.068 5.068 18 H 0.284 0.716 19 C -0.053 4.053 20 N -0.312 5.312 21 C -0.102 4.102 22 N -0.283 5.283 23 C -0.188 4.188 24 C -0.042 4.042 25 C -0.230 4.230 26 H 0.083 0.917 27 H 0.151 0.849 28 H 0.178 0.822 29 H 0.213 0.787 30 H 0.279 0.721 31 H 0.226 0.774 32 H 0.137 0.863 33 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 18.224 -15.546 -4.686 24.408 hybrid contribution -0.423 0.629 0.253 0.799 sum 17.801 -14.917 -4.433 23.644 Atomic orbital electron populations 1.70186 1.08264 1.28995 1.48051 1.26690 0.96828 1.02971 0.95518 0.84485 0.78524 0.74468 0.78463 1.16829 1.19235 1.19714 1.22007 0.92887 0.81049 1.53215 0.87205 1.83908 1.36398 1.12780 1.79777 1.20025 0.91885 0.87484 0.92468 1.21215 0.92524 1.00379 1.12012 1.21140 1.00377 0.89397 0.93658 1.18474 0.92520 0.92614 1.12780 1.19258 0.90060 0.88666 0.87886 1.21342 0.98033 1.01240 1.03259 1.23312 0.96760 0.85941 0.87196 1.40741 1.24496 1.21719 1.19885 0.71622 1.20317 0.94541 0.95408 0.95027 1.70257 1.16847 1.33593 1.10506 1.25446 0.94966 0.89108 1.00705 1.70739 1.26278 1.22995 1.08249 1.20390 1.00263 0.97730 1.00389 1.20759 0.93194 0.96268 0.93970 1.20262 0.99857 0.90455 1.12380 0.91685 0.84857 0.82192 0.78725 0.72059 0.77392 0.86322 0.87053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.81 13.67 21.62 0.30 -55.51 16 2 C -0.02 -1.22 5.49 84.85 0.47 -0.75 16 3 Si 1.02 41.52 29.55 68.60 2.03 43.55 16 4 H -0.25 -8.99 7.11 99.48 0.71 -8.28 16 5 H -0.27 -10.40 7.11 99.48 0.71 -9.69 16 6 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 7 C -0.42 -23.59 9.48 67.93 0.64 -22.94 16 8 H 0.11 5.57 5.19 -2.91 -0.02 5.56 16 9 O -0.22 -13.34 9.75 -20.71 -0.20 -13.54 16 10 C 0.13 6.64 6.66 22.69 0.15 6.79 16 11 C -0.24 -10.02 9.15 22.35 0.20 -9.81 16 12 C -0.03 -0.90 9.54 22.50 0.21 -0.68 16 13 C -0.16 -5.45 5.51 -20.04 -0.11 -5.56 16 14 C 0.15 3.96 5.52 -19.63 -0.11 3.85 16 15 C -0.22 -2.60 9.49 22.20 0.21 -2.39 16 16 C 0.21 0.70 11.10 83.68 0.93 1.63 16 17 N -0.47 -5.07 5.28 -192.66 -1.02 -6.09 16 18 H 0.44 1.37 8.91 -92.71 -0.83 0.55 16 19 C 0.20 5.21 8.48 134.15 1.14 6.35 16 20 N -0.58 -18.77 11.33 -196.87 -2.23 -21.00 16 21 C 0.19 6.54 12.89 180.65 2.33 8.87 16 22 N -0.56 -21.94 11.32 -192.93 -2.18 -24.12 16 23 C -0.06 -1.85 6.80 40.16 0.27 -1.58 16 24 C -0.02 -0.92 9.49 22.51 0.21 -0.71 16 25 C -0.21 -9.58 9.97 22.35 0.22 -9.36 16 26 H 0.27 15.20 8.31 -92.70 -0.77 14.43 16 27 H 0.13 5.39 5.62 -2.91 -0.02 5.38 16 28 H 0.16 3.61 8.05 -2.91 -0.02 3.59 16 29 H 0.20 1.15 8.06 -2.91 -0.02 1.13 16 30 H 0.26 -3.08 8.06 -2.91 -0.02 -3.10 16 31 H 0.21 5.93 8.06 -2.91 -0.02 5.91 16 32 H 0.12 4.54 8.06 -2.91 -0.02 4.52 16 33 H 0.11 5.11 8.06 -2.91 -0.02 5.09 16 Total: -1.00 -91.82 298.15 3.82 -88.00 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: 0.35 Total: 15.00 kcal Atomic # 6 Polarization: -33.07 SS G_CDS: 6.78 Total: -26.29 kcal Atomic # 7 Polarization: -101.59 SS G_CDS: -5.14 Total: -106.72 kcal Atomic # 8 Polarization: -13.34 SS G_CDS: -0.20 Total: -13.54 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 2.03 Total: 43.55 kcal Total: -91.82 3.82 -88.00 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243591926.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.275 kcal (2) G-P(sol) polarization free energy of solvation -91.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds