Wall clock time and date at job start Tue Mar 31 2020 05:24:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31550 * 1 3 3 Si 1.86799 * 120.00302 * 2 1 4 4 H 1.48501 * 109.47457 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47198 * 300.00664 * 3 2 1 6 6 H 1.48501 * 109.46758 * 60.00418 * 3 2 1 7 7 C 1.38655 * 119.99885 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00468 * 179.97438 * 7 2 1 9 9 O 1.34813 * 120.00275 * 359.97438 * 7 2 1 10 10 C 1.35645 * 117.00403 * 185.06170 * 9 7 2 11 11 C 1.39072 * 119.93207 * 354.44901 * 10 9 7 12 12 C 1.37750 * 120.06631 * 179.70359 * 11 10 9 13 13 C 1.39625 * 119.93423 * 0.27606 * 12 11 10 14 14 C 1.47950 * 120.06715 * 180.02562 * 13 12 11 15 15 N 1.32253 * 120.58615 * 324.72107 * 14 13 12 16 16 C 1.33240 * 121.15686 * 179.68992 * 15 14 13 17 17 C 1.34912 * 122.08583 * 0.62856 * 16 15 14 18 18 N 1.36748 * 120.53673 * 359.66788 * 17 16 15 19 19 C 1.36088 * 133.86806 * 180.02562 * 18 17 16 20 20 C 1.35409 * 107.14249 * 180.02562 * 19 18 17 21 21 N 1.33467 * 108.56742 * 359.97438 * 20 19 18 22 22 C 1.31939 * 109.12382 * 359.97438 * 21 20 19 23 23 C 1.39627 * 119.86625 * 0.02562 * 13 12 11 24 24 C 1.37754 * 119.92916 * 359.97438 * 23 13 12 25 25 H 0.96995 * 119.99795 * 359.97438 * 1 2 3 26 26 H 1.08000 * 119.96213 * 359.97438 * 11 10 9 27 27 H 1.08002 * 120.03153 * 180.25012 * 12 11 10 28 28 H 1.07999 * 118.95153 * 180.29334 * 16 15 14 29 29 H 1.08005 * 119.73026 * 179.69488 * 17 16 15 30 30 H 1.08005 * 126.42896 * 0.02562 * 19 18 17 31 31 H 1.08000 * 125.71412 * 179.97438 * 20 19 18 32 32 H 1.07996 * 120.03658 * 179.97438 * 23 13 12 33 33 H 1.08007 * 119.96316 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.7096 1.3463 -0.0006 5 1 1.8908 2.3965 -1.2124 6 1 1.8909 2.3963 1.2126 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0010 9 8 1.3347 -2.3683 -0.0005 10 6 2.0694 -3.5037 0.1056 11 6 3.4584 -3.4352 0.0915 12 6 4.2072 -4.5858 0.2052 13 6 3.5704 -5.8222 0.3288 14 6 4.3718 -7.0598 0.4517 15 7 5.5172 -7.1870 -0.1971 16 6 6.2509 -8.2940 -0.0899 17 6 5.8634 -9.3399 0.6689 18 7 4.6893 -9.2936 1.3685 19 6 4.0495 -10.1642 2.1959 20 6 2.9054 -9.5631 2.6001 21 7 2.8393 -8.3540 2.0389 22 6 3.9086 -8.1665 1.2890 23 6 2.1757 -5.8883 0.3363 24 6 1.4323 -4.7342 0.2222 25 1 -0.4849 0.8400 0.0004 26 1 3.9503 -2.4786 -0.0042 27 1 5.2858 -4.5316 0.1983 28 1 7.1829 -8.3579 -0.6318 29 1 6.4856 -10.2209 0.7246 30 1 4.3903 -11.1496 2.4774 31 1 2.1696 -9.9906 3.2652 32 1 1.6803 -6.8432 0.4314 33 1 0.3534 -4.7847 0.2284 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243592358.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:09 Heat of formation + Delta-G solvation = 86.260500 kcal Electronic energy + Delta-G solvation = -20129.655948 eV Core-core repulsion = 16929.090667 eV Total energy + Delta-G solvation = -3200.565281 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.090 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.88190 -40.84161 -39.44273 -38.20300 -35.27805 -34.30182 -32.18356 -31.98043 -30.45746 -29.71097 -27.46210 -25.43155 -24.37856 -23.39181 -23.11049 -22.09359 -20.03104 -19.38473 -18.89735 -18.31282 -17.09567 -16.75141 -16.40768 -16.17196 -16.16612 -15.59717 -15.38576 -15.18038 -14.72167 -14.57621 -14.33094 -14.11013 -13.83974 -13.55333 -13.12076 -12.74234 -12.71432 -12.40490 -12.31565 -12.07766 -11.26411 -11.25075 -10.88248 -10.82664 -10.01001 -9.87746 -9.39435 -8.66851 -8.49760 -6.16745 -0.72316 0.25808 0.58131 0.68346 1.37660 1.45282 1.51051 1.56306 1.91730 2.17364 2.46178 2.76100 2.83665 3.10234 3.25991 3.41240 3.44046 3.81709 4.04670 4.13551 4.20995 4.35708 4.41803 4.46329 4.52339 4.65815 4.82884 4.96389 5.11496 5.18907 5.25197 5.49632 5.58772 5.62130 5.63614 5.85939 5.99248 6.05629 6.70986 6.86163 6.94303 7.70523 8.72765 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.034707 B = 0.003616 C = 0.003363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.558524 B = 7742.259904 C = 8324.347397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.019 4.019 3 Si 1.021 2.979 4 H -0.249 1.249 5 H -0.268 1.268 6 H -0.268 1.268 7 C -0.417 4.417 8 H 0.107 0.893 9 O -0.218 6.218 10 C 0.140 3.860 11 C -0.245 4.245 12 C -0.017 4.017 13 C -0.146 4.146 14 C 0.269 3.731 15 N -0.490 5.490 16 C 0.031 3.969 17 C -0.001 4.001 18 N -0.356 5.356 19 C -0.064 4.064 20 C 0.005 3.995 21 N -0.497 5.497 22 C 0.134 3.866 23 C -0.016 4.016 24 C -0.205 4.205 25 H 0.275 0.725 26 H 0.132 0.868 27 H 0.140 0.860 28 H 0.213 0.787 29 H 0.219 0.781 30 H 0.234 0.766 31 H 0.212 0.788 32 H 0.136 0.864 33 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.864 -20.595 2.894 24.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.218 4.218 3 Si 0.839 3.161 4 H -0.173 1.173 5 H -0.193 1.193 6 H -0.193 1.193 7 C -0.492 4.492 8 H 0.125 0.875 9 O -0.123 6.123 10 C 0.087 3.913 11 C -0.265 4.265 12 C -0.036 4.036 13 C -0.149 4.149 14 C 0.109 3.891 15 N -0.202 5.202 16 C -0.107 4.107 17 C -0.123 4.123 18 N -0.029 5.029 19 C -0.198 4.198 20 C -0.147 4.147 21 N -0.219 5.219 22 C -0.112 4.112 23 C -0.036 4.036 24 C -0.224 4.224 25 H 0.084 0.916 26 H 0.149 0.851 27 H 0.157 0.843 28 H 0.230 0.770 29 H 0.236 0.764 30 H 0.250 0.750 31 H 0.228 0.772 32 H 0.154 0.846 33 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 13.369 -19.387 2.397 23.672 hybrid contribution 0.165 -0.336 0.410 0.555 sum 13.535 -19.723 2.806 24.084 Atomic orbital electron populations 1.70184 1.08094 1.29022 1.47880 1.26638 0.96850 1.02809 0.95461 0.84503 0.78368 0.74597 0.78589 1.17264 1.19253 1.19331 1.21976 0.92832 0.81139 1.53274 0.87533 1.83921 1.36138 1.12669 1.79538 1.20008 0.91460 0.87776 0.92037 1.21165 0.92876 0.99881 1.12539 1.20963 0.99761 0.89957 0.92960 1.17894 0.92244 0.90524 1.14223 1.20442 0.90370 0.89642 0.88687 1.68360 1.05017 1.26139 1.20708 1.22728 1.01389 0.87540 0.99054 1.23200 0.87829 1.04390 0.96927 1.43104 1.16003 1.13688 1.30113 1.23502 0.96533 0.99472 1.00327 1.23399 0.98807 0.90333 1.02124 1.70423 1.20207 1.19598 1.11633 1.22920 0.92216 0.91167 1.04932 1.20857 0.92241 0.97207 0.93277 1.20288 1.00203 0.89898 1.12030 0.91609 0.85056 0.84252 0.77022 0.76413 0.74954 0.77156 0.84583 0.85902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.72 13.67 21.61 0.30 -55.43 16 2 C -0.02 -1.08 5.49 84.83 0.47 -0.61 16 3 Si 1.02 42.44 29.55 68.60 2.03 44.46 16 4 H -0.25 -9.56 7.11 99.48 0.71 -8.85 16 5 H -0.27 -10.66 7.11 99.48 0.71 -9.96 16 6 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 7 C -0.42 -24.11 9.48 67.92 0.64 -23.46 16 8 H 0.11 5.63 5.19 -2.91 -0.02 5.62 16 9 O -0.22 -13.13 9.75 -21.42 -0.21 -13.34 16 10 C 0.14 7.15 6.65 22.67 0.15 7.30 16 11 C -0.25 -11.09 9.15 22.35 0.20 -10.89 16 12 C -0.02 -0.67 9.60 22.49 0.22 -0.46 16 13 C -0.15 -5.63 5.77 -20.03 -0.12 -5.75 16 14 C 0.27 8.97 6.66 43.76 0.29 9.26 16 15 N -0.49 -14.10 10.11 -181.26 -1.83 -15.94 16 16 C 0.03 0.58 11.01 83.71 0.92 1.50 16 17 C 0.00 -0.02 10.99 83.16 0.91 0.89 16 18 N -0.36 -7.66 2.96 -347.40 -1.03 -8.68 16 19 C -0.06 -1.03 11.80 83.38 0.98 -0.04 16 20 C 0.01 0.12 11.84 83.79 0.99 1.11 16 21 N -0.50 -15.52 10.15 -189.71 -1.93 -17.45 16 22 C 0.13 4.12 7.45 135.65 1.01 5.13 16 23 C -0.02 -0.65 9.24 22.49 0.21 -0.45 16 24 C -0.20 -9.33 9.98 22.35 0.22 -9.11 16 25 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 26 H 0.13 5.84 5.62 -2.91 -0.02 5.83 16 27 H 0.14 4.73 7.99 -2.91 -0.02 4.71 16 28 H 0.21 2.04 8.06 -2.91 -0.02 2.01 16 29 H 0.22 0.83 8.06 -2.91 -0.02 0.80 16 30 H 0.23 1.18 8.06 -2.91 -0.02 1.16 16 31 H 0.21 2.88 8.06 -2.91 -0.02 2.85 16 32 H 0.14 5.05 7.02 -2.91 -0.02 5.03 16 33 H 0.12 5.44 8.06 -2.91 -0.02 5.41 16 Total: -1.00 -78.46 297.03 5.60 -72.87 By element: Atomic # 1 Polarization: 17.91 SS G_CDS: 1.16 Total: 19.07 kcal Atomic # 6 Polarization: -32.67 SS G_CDS: 7.11 Total: -25.56 kcal Atomic # 7 Polarization: -93.00 SS G_CDS: -4.49 Total: -97.49 kcal Atomic # 8 Polarization: -13.13 SS G_CDS: -0.21 Total: -13.34 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.46 kcal Total: -78.46 5.60 -72.87 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243592358.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.126 kcal (2) G-P(sol) polarization free energy of solvation -78.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds