Wall clock time and date at job start Tue Mar 31 2020 05:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31577 * 1 3 3 Si 1.86800 * 119.99711 * 2 1 4 4 H 1.48501 * 109.47186 * 269.99756 * 3 2 1 5 5 H 1.48495 * 109.47316 * 29.99754 * 3 2 1 6 6 H 1.48504 * 109.46874 * 149.99913 * 3 2 1 7 7 C 1.38613 * 119.99916 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99626 * 180.02562 * 7 2 1 9 9 O 1.34812 * 120.00128 * 359.97438 * 7 2 1 10 10 C 1.35682 * 117.00125 * 185.05379 * 9 7 2 11 11 C 1.39042 * 119.93142 * 354.45822 * 10 9 7 12 12 C 1.37781 * 120.06246 * 179.97438 * 11 10 9 13 13 C 1.39587 * 119.93858 * 359.97438 * 12 11 10 14 14 C 1.48029 * 120.07129 * 179.97438 * 13 12 11 15 15 C 1.38469 * 120.85964 * 310.00513 * 14 13 12 16 16 C 1.40120 * 119.39337 * 180.02562 * 15 14 13 17 17 C 1.34904 * 121.15545 * 0.02562 * 16 15 14 18 18 N 1.36339 * 121.51370 * 359.97438 * 17 16 15 19 19 C 1.36104 * 133.74306 * 179.97438 * 18 17 16 20 20 N 1.30803 * 107.49481 * 179.97438 * 19 18 17 21 21 N 1.28721 * 110.25591 * 0.02562 * 20 19 18 22 22 C 1.31913 * 109.47561 * 359.97438 * 21 20 19 23 23 C 1.39596 * 119.86517 * 0.25829 * 13 12 11 24 24 C 1.37783 * 119.93419 * 359.48821 * 23 13 12 25 25 H 0.96998 * 120.00264 * 0.02562 * 1 2 3 26 26 H 1.08000 * 119.97004 * 359.94645 * 11 10 9 27 27 H 1.07999 * 120.03480 * 180.02562 * 12 11 10 28 28 H 1.08002 * 120.30450 * 0.03976 * 15 14 13 29 29 H 1.07999 * 119.42003 * 180.02562 * 16 15 14 30 30 H 1.07996 * 119.24398 * 179.97438 * 17 16 15 31 31 H 1.08003 * 126.25626 * 0.02835 * 19 18 17 32 32 H 1.07993 * 120.03153 * 179.74298 * 23 13 12 33 33 H 1.08003 * 119.96740 * 180.25017 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 2.4972 2.0465 -1.4001 5 1 1.4471 2.6527 0.7000 6 1 3.5473 1.4402 0.7001 7 6 2.0088 -1.2004 0.0005 8 1 3.0889 -1.2004 0.0010 9 8 1.3348 -2.3679 0.0016 10 6 2.0697 -3.5035 0.1086 11 6 3.4584 -3.4350 0.0945 12 6 4.2073 -4.5863 0.2035 13 6 3.5707 -5.8223 0.3286 14 6 4.3725 -7.0611 0.4453 15 6 5.3940 -7.3329 -0.4491 16 6 6.1331 -8.5152 -0.3103 17 6 5.8665 -9.3930 0.6788 18 7 4.8707 -9.1676 1.5823 19 6 4.3954 -9.8624 2.6518 20 7 3.4141 -9.1679 3.1673 21 7 3.2360 -8.0832 2.4976 22 6 4.1065 -8.0293 1.5080 23 6 2.1764 -5.8882 0.3375 24 6 1.4327 -4.7330 0.2335 25 1 -0.4850 0.8400 -0.0004 26 1 3.9504 -2.4785 -0.0024 27 1 5.2859 -4.5326 0.1929 28 1 5.6192 -6.6399 -1.2462 29 1 6.9302 -8.7275 -1.0074 30 1 6.4554 -10.2949 0.7568 31 1 4.7621 -10.8130 3.0101 32 1 1.6811 -6.8434 0.4301 33 1 0.3539 -4.7831 0.2444 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243592722.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:24 Heat of formation + Delta-G solvation = 111.065681 kcal Electronic energy + Delta-G solvation = -20109.094331 eV Core-core repulsion = 16909.604683 eV Total energy + Delta-G solvation = -3199.489648 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.090 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.38746 -39.14379 -38.07579 -36.61482 -33.84854 -32.37160 -31.34864 -30.37772 -29.73740 -27.88065 -25.50254 -24.06925 -23.46138 -22.49165 -21.82290 -20.78349 -18.26795 -17.96688 -17.27565 -16.98058 -16.39811 -16.01359 -15.13410 -14.83430 -14.57570 -14.47539 -13.69078 -13.66844 -13.19023 -12.76723 -12.64216 -12.48399 -12.26701 -11.80422 -11.66707 -11.49211 -11.12387 -10.98114 -10.73728 -10.66483 -10.49513 -10.48369 -9.62461 -9.42092 -8.93568 -8.26795 -8.17752 -7.11723 -6.54104 -4.11091 0.47436 1.12374 2.11615 2.20873 2.35517 2.74479 3.08278 3.09941 3.14958 3.33115 3.89987 4.01477 4.21494 4.41393 4.54296 4.74093 4.82801 4.92806 5.02227 5.21385 5.45863 5.51401 5.60518 5.74579 5.81485 5.98906 6.05471 6.13236 6.29340 6.37646 6.60900 6.81711 6.84107 6.97644 7.18251 7.24932 7.35068 7.71319 7.90738 8.58376 8.90748 9.58966 10.63051 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.033546 B = 0.003584 C = 0.003395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.476467 B = 7810.983154 C = 8246.299218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.040 3.960 3 Si 0.943 3.057 4 H -0.272 1.272 5 H -0.276 1.276 6 H -0.266 1.266 7 C -0.392 4.392 8 H 0.095 0.905 9 O -0.168 6.168 10 C 0.166 3.834 11 C -0.238 4.238 12 C -0.042 4.042 13 C -0.168 4.168 14 C 0.057 3.943 15 C -0.125 4.125 16 C -0.114 4.114 17 C 0.028 3.972 18 N -0.391 5.391 19 C 0.107 3.893 20 N -0.261 5.261 21 N -0.275 5.275 22 C 0.196 3.804 23 C -0.030 4.030 24 C -0.193 4.193 25 H 0.272 0.728 26 H 0.131 0.869 27 H 0.111 0.889 28 H 0.147 0.853 29 H 0.151 0.849 30 H 0.163 0.837 31 H 0.223 0.777 32 H 0.114 0.886 33 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.734 -15.919 -1.732 21.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C -0.165 4.165 3 Si 0.767 3.233 4 H -0.198 1.198 5 H -0.201 1.201 6 H -0.191 1.191 7 C -0.468 4.468 8 H 0.113 0.887 9 O -0.069 6.069 10 C 0.110 3.890 11 C -0.258 4.258 12 C -0.060 4.060 13 C -0.169 4.169 14 C 0.053 3.947 15 C -0.148 4.148 16 C -0.135 4.135 17 C -0.093 4.093 18 N -0.071 5.071 19 C -0.175 4.175 20 N -0.100 5.100 21 N -0.120 5.120 22 C -0.055 4.055 23 C -0.049 4.049 24 C -0.212 4.212 25 H 0.082 0.918 26 H 0.149 0.851 27 H 0.129 0.871 28 H 0.165 0.835 29 H 0.169 0.831 30 H 0.180 0.820 31 H 0.239 0.761 32 H 0.132 0.868 33 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 12.056 -15.376 -0.659 19.550 hybrid contribution 1.676 0.216 -0.743 1.845 sum 13.731 -15.160 -1.402 20.502 Atomic orbital electron populations 1.70047 1.06038 1.27994 1.44878 1.25343 0.95881 0.99012 0.96260 0.85677 0.78983 0.79813 0.78789 1.19761 1.20137 1.19056 1.21400 0.91975 0.80695 1.52750 0.88743 1.83956 1.34686 1.11642 1.76666 1.19518 0.90283 0.87935 0.91249 1.21047 0.93675 0.98819 1.12213 1.20711 0.98234 0.90951 0.96099 1.17773 0.92560 0.90103 1.16505 1.19081 0.94730 0.91522 0.89349 1.21516 0.95955 0.97660 0.99681 1.20734 1.00967 0.94085 0.97744 1.21343 0.93176 1.02621 0.92186 1.43811 1.24391 1.17310 1.21578 1.26418 0.98980 1.02330 0.89772 1.74300 1.13158 1.00692 1.21866 1.74921 1.19928 1.12864 1.04257 1.23726 0.93335 0.89032 0.99443 1.20623 0.92064 0.97053 0.95151 1.20139 0.99815 0.89952 1.11302 0.91780 0.85112 0.87146 0.83485 0.83112 0.81961 0.76086 0.86844 0.86055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.66 13.67 55.48 0.76 -23.90 16 2 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 3 Si 0.94 20.00 29.55 -169.99 -5.02 14.98 16 4 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 5 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 6 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 7 C -0.39 -10.70 9.48 30.87 0.29 -10.40 16 8 H 0.10 2.36 5.19 -52.48 -0.27 2.08 16 9 O -0.17 -4.70 9.75 0.31 0.00 -4.70 16 10 C 0.17 3.95 6.65 -38.99 -0.26 3.69 16 11 C -0.24 -5.02 9.15 -39.45 -0.36 -5.38 16 12 C -0.04 -0.74 9.53 -39.25 -0.37 -1.12 16 13 C -0.17 -2.99 5.53 -104.87 -0.58 -3.57 16 14 C 0.06 0.86 5.63 -102.60 -0.58 0.28 16 15 C -0.12 -1.39 9.63 -38.79 -0.37 -1.76 16 16 C -0.11 -0.92 9.92 -40.06 -0.40 -1.31 16 17 C 0.03 0.23 10.93 -16.73 -0.18 0.05 16 18 N -0.39 -4.78 2.95 -62.47 -0.18 -4.96 16 19 C 0.11 1.26 12.97 -89.15 -1.16 0.10 16 20 N -0.26 -4.26 12.19 29.86 0.36 -3.90 16 21 N -0.27 -5.10 12.29 32.26 0.40 -4.70 16 22 C 0.20 3.15 7.72 -154.21 -1.19 1.96 16 23 C -0.03 -0.58 9.58 -39.24 -0.38 -0.96 16 24 C -0.19 -4.15 9.98 -39.45 -0.39 -4.54 16 25 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 26 H 0.13 2.71 5.62 -52.49 -0.30 2.41 16 27 H 0.11 1.63 8.05 -52.49 -0.42 1.21 16 28 H 0.15 1.40 8.06 -52.49 -0.42 0.98 16 29 H 0.15 0.65 8.06 -52.49 -0.42 0.23 16 30 H 0.16 0.66 8.06 -52.49 -0.42 0.24 16 31 H 0.22 1.38 8.06 -52.48 -0.42 0.96 16 32 H 0.11 2.04 8.06 -52.49 -0.42 1.62 16 33 H 0.12 2.52 8.06 -52.48 -0.42 2.10 16 LS Contribution 299.45 15.07 4.51 4.51 Total: -1.00 -33.70 299.45 -7.86 -41.56 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: -2.66 Total: 3.08 kcal Atomic # 6 Polarization: -15.95 SS G_CDS: -6.03 Total: -21.98 kcal Atomic # 7 Polarization: -38.79 SS G_CDS: 1.33 Total: -37.46 kcal Atomic # 8 Polarization: -4.70 SS G_CDS: 0.00 Total: -4.70 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.98 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -33.70 -7.86 -41.56 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243592722.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.623 kcal (2) G-P(sol) polarization free energy of solvation -33.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.558 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds