Wall clock time and date at job start Tue Mar 31 2020 05:24:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30837 * 1 3 3 Si 1.86797 * 120.00120 * 2 1 4 4 H 1.48503 * 109.47143 * 275.40883 * 3 2 1 5 5 H 1.48499 * 109.47080 * 35.40870 * 3 2 1 6 6 H 1.48496 * 109.47311 * 155.40861 * 3 2 1 7 7 C 1.39919 * 119.99764 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00253 * 341.74283 * 7 2 1 9 9 C 1.41431 * 119.99845 * 161.73761 * 7 2 1 10 10 C 1.40820 * 120.17700 * 330.17446 * 9 7 2 11 11 C 1.37708 * 120.03455 * 180.02562 * 10 9 7 12 12 C 1.38386 * 120.40150 * 359.72109 * 11 10 9 13 13 C 1.39889 * 120.35257 * 0.56187 * 12 11 10 14 14 C 1.47906 * 120.02055 * 179.71754 * 13 12 11 15 15 C 1.35574 * 125.22593 * 179.68628 * 14 13 12 16 16 C 1.46221 * 106.95097 * 180.02562 * 15 14 13 17 17 C 1.39812 * 133.78121 * 179.97438 * 16 15 14 18 18 C 1.36573 * 119.79977 * 179.74790 * 17 16 15 19 19 C 1.39055 * 120.50303 * 0.55469 * 18 17 16 20 20 F 1.35105 * 119.67829 * 179.71330 * 19 18 17 21 21 C 1.37967 * 120.63550 * 359.44394 * 19 18 17 22 22 C 1.39110 * 119.79407 * 0.26988 * 21 19 18 23 23 N 1.37656 * 125.22299 * 359.71720 * 14 13 12 24 24 H 0.96996 * 125.09784 * 359.95437 * 23 14 13 25 25 C 1.38984 * 119.95946 * 359.43822 * 13 12 11 26 26 H 0.97004 * 120.00016 * 0.02562 * 1 2 3 27 27 H 1.07997 * 119.98497 * 0.04509 * 10 9 7 28 28 H 1.08001 * 119.80186 * 180.02562 * 11 10 9 29 29 H 1.07996 * 119.81888 * 180.29876 * 12 11 10 30 30 H 1.07997 * 126.52417 * 0.04826 * 15 14 13 31 31 H 1.08003 * 120.09913 * 0.02562 * 17 16 15 32 32 H 1.07991 * 119.74606 * 180.29635 * 18 17 16 33 33 H 1.07997 * 120.10513 * 180.25322 * 21 19 18 34 34 H 1.08003 * 120.20118 * 180.30024 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.3756 2.1124 -1.3939 5 1 1.5017 2.6169 0.8112 6 1 3.5924 1.4099 0.5826 7 6 2.0079 -1.2118 0.0005 8 1 1.5087 -2.1234 0.2939 9 6 3.3688 -1.2428 -0.3833 10 6 3.8626 -0.3107 -1.3162 11 6 5.1880 -0.3439 -1.6883 12 6 6.0442 -1.2864 -1.1461 13 6 5.5699 -2.2238 -0.2225 14 6 6.4900 -3.2318 0.3476 15 6 6.1461 -4.1820 1.2515 16 6 7.3538 -4.9551 1.5377 17 6 7.6311 -6.0432 2.3707 18 6 8.8950 -6.5587 2.4158 19 6 9.9120 -6.0023 1.6479 20 9 11.1576 -6.5219 1.7098 21 6 9.6600 -4.9283 0.8193 22 6 8.3783 -4.3916 0.7538 23 7 7.8272 -3.3488 0.0424 24 1 8.3088 -2.7822 -0.5804 25 6 4.2349 -2.2038 0.1636 26 1 -0.4850 0.8401 -0.0004 27 1 3.2015 0.4308 -1.7400 28 1 5.5629 0.3730 -2.4038 29 1 7.0830 -1.3008 -1.4410 30 1 5.1666 -4.3384 1.6785 31 1 6.8471 -6.4776 2.9733 32 1 9.1071 -7.4022 3.0559 33 1 10.4554 -4.5055 0.2235 34 1 3.8657 -2.9227 0.8801 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245589469.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:25 Heat of formation + Delta-G solvation = 19.736960 kcal Electronic energy + Delta-G solvation = -19842.334707 eV Core-core repulsion = 16618.964788 eV Total energy + Delta-G solvation = -3223.369920 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.091 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -48.85814 -41.09977 -37.99782 -36.47638 -33.75327 -32.05618 -30.94065 -30.36649 -29.39014 -27.35397 -25.32934 -23.31568 -22.13702 -21.56410 -20.45493 -19.90888 -18.29218 -17.57437 -16.37960 -16.10348 -15.78201 -15.60076 -15.13268 -14.79673 -14.25126 -14.11324 -13.83149 -13.70018 -13.27227 -13.01261 -12.73105 -12.53439 -12.19175 -11.83532 -11.70274 -11.35771 -11.03313 -10.95976 -10.84140 -10.52042 -10.02266 -9.73976 -9.69733 -9.29835 -8.46668 -7.98889 -7.85916 -7.09472 -7.06091 -4.62766 0.89766 1.48994 2.04129 2.45473 3.01412 3.09701 3.13434 3.19517 3.32816 3.79203 3.88249 4.38453 4.40546 4.65569 4.88400 5.04538 5.25610 5.26679 5.33789 5.52036 5.70968 5.91461 5.93198 5.99133 6.11263 6.14479 6.32769 6.40163 6.54812 6.56393 6.81295 6.89450 6.95313 7.12855 7.24766 7.38421 7.53265 7.60921 7.69462 7.91215 8.21609 8.46822 8.65758 9.95459 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.037897 B = 0.003548 C = 0.003332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.665961 B = 7889.371237 C = 8400.892631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C 0.084 3.916 3 Si 0.911 3.089 4 H -0.270 1.270 5 H -0.289 1.289 6 H -0.244 1.244 7 C -0.444 4.444 8 H 0.094 0.906 9 C 0.092 3.908 10 C -0.230 4.230 11 C -0.075 4.075 12 C -0.236 4.236 13 C -0.016 4.016 14 C 0.157 3.843 15 C -0.198 4.198 16 C -0.110 4.110 17 C -0.042 4.042 18 C -0.183 4.183 19 C 0.106 3.894 20 F -0.144 7.144 21 C -0.166 4.166 22 C 0.119 3.881 23 N -0.588 5.588 24 H 0.415 0.585 25 C -0.171 4.171 26 H 0.287 0.713 27 H 0.103 0.897 28 H 0.097 0.903 29 H 0.089 0.911 30 H 0.153 0.847 31 H 0.132 0.868 32 H 0.132 0.868 33 H 0.129 0.871 34 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.013 -5.974 2.028 14.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.135 4.135 3 Si 0.737 3.263 4 H -0.196 1.196 5 H -0.216 1.216 6 H -0.167 1.167 7 C -0.472 4.472 8 H 0.112 0.888 9 C 0.089 3.911 10 C -0.250 4.250 11 C -0.093 4.093 12 C -0.255 4.255 13 C -0.017 4.017 14 C 0.050 3.950 15 C -0.222 4.222 16 C -0.115 4.115 17 C -0.061 4.061 18 C -0.203 4.203 19 C 0.086 3.914 20 F -0.123 7.123 21 C -0.188 4.188 22 C 0.010 3.990 23 N -0.191 5.191 24 H 0.253 0.747 25 C -0.191 4.191 26 H 0.097 0.903 27 H 0.120 0.880 28 H 0.115 0.885 29 H 0.107 0.893 30 H 0.170 0.830 31 H 0.150 0.850 32 H 0.149 0.851 33 H 0.147 0.853 34 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 12.796 -5.814 1.967 14.192 hybrid contribution 0.744 1.024 -0.437 1.339 sum 13.540 -4.790 1.530 14.443 Atomic orbital electron populations 1.69694 1.08113 1.30459 1.34371 1.26162 0.94732 1.01790 0.90855 0.86316 0.81363 0.79744 0.78888 1.19589 1.21647 1.16693 1.19506 0.92961 0.96290 1.38449 0.88836 1.17628 0.93014 0.90747 0.89732 1.21152 0.95632 1.04657 1.03525 1.20481 0.93712 0.97011 0.98105 1.20250 0.97916 1.01577 1.05788 1.17821 0.92256 0.93838 0.97796 1.19196 0.82052 0.96903 0.96876 1.21716 0.97821 0.98594 1.04027 1.19265 0.93722 0.98418 1.00100 1.20148 0.95819 0.93715 0.96411 1.20519 0.92739 1.03436 1.03571 1.17102 0.79756 0.95030 0.99538 1.91466 1.39408 1.85945 1.95467 1.19725 0.95175 0.99487 1.04408 1.17769 0.93544 0.91454 0.96245 1.41892 1.08818 1.28827 1.39550 0.74694 1.21052 0.90968 1.03630 1.03464 0.90267 0.87954 0.88453 0.89279 0.82985 0.84979 0.85057 0.85320 0.87149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.56 13.93 55.55 0.77 -19.78 16 2 C 0.08 2.11 5.40 -17.35 -0.09 2.02 16 3 Si 0.91 19.86 24.52 -169.99 -4.17 15.69 16 4 H -0.27 -5.70 6.71 56.52 0.38 -5.32 16 5 H -0.29 -6.11 7.11 56.52 0.40 -5.70 16 6 H -0.24 -5.45 6.86 56.52 0.39 -5.06 16 7 C -0.44 -11.38 9.57 -37.74 -0.36 -11.75 16 8 H 0.09 2.50 8.06 -52.49 -0.42 2.07 16 9 C 0.09 2.19 5.10 -106.87 -0.55 1.65 16 10 C -0.23 -5.23 7.17 -38.80 -0.28 -5.51 16 11 C -0.07 -1.51 10.01 -39.72 -0.40 -1.91 16 12 C -0.24 -4.50 9.70 -38.91 -0.38 -4.88 16 13 C -0.02 -0.32 5.87 -105.04 -0.62 -0.93 16 14 C 0.16 2.71 6.87 -82.24 -0.56 2.14 16 15 C -0.20 -3.24 10.40 -37.33 -0.39 -3.62 16 16 C -0.11 -1.65 6.36 -105.14 -0.67 -2.32 16 17 C -0.04 -0.53 10.05 -39.59 -0.40 -0.93 16 18 C -0.18 -2.15 9.95 -39.88 -0.40 -2.55 16 19 C 0.11 1.36 7.28 -39.38 -0.29 1.07 16 20 F -0.14 -1.83 17.25 2.25 0.04 -1.79 16 21 C -0.17 -2.15 10.05 -39.36 -0.40 -2.54 16 22 C 0.12 1.73 7.26 -83.93 -0.61 1.12 16 23 N -0.59 -8.69 5.98 -7.28 -0.04 -8.73 16 24 H 0.42 5.14 7.93 -40.82 -0.32 4.82 16 25 C -0.17 -3.72 9.28 -38.47 -0.36 -4.07 16 26 H 0.29 6.64 8.30 -40.82 -0.34 6.30 16 27 H 0.10 2.32 4.72 -52.49 -0.25 2.07 16 28 H 0.10 1.69 8.06 -52.49 -0.42 1.27 16 29 H 0.09 1.43 7.05 -52.49 -0.37 1.06 16 30 H 0.15 2.32 7.17 -52.49 -0.38 1.94 16 31 H 0.13 1.32 8.06 -52.48 -0.42 0.90 16 32 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 33 H 0.13 1.40 8.06 -52.49 -0.42 0.97 16 34 H 0.11 2.24 6.89 -52.48 -0.36 1.88 16 LS Contribution 295.01 15.07 4.45 4.45 Total: -1.00 -26.51 295.01 -8.65 -35.16 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -2.96 Total: 8.01 kcal Atomic # 6 Polarization: -26.27 SS G_CDS: -6.73 Total: -33.00 kcal Atomic # 7 Polarization: -29.24 SS G_CDS: 0.73 Total: -28.51 kcal Atomic # 9 Polarization: -1.83 SS G_CDS: 0.04 Total: -1.79 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -4.17 Total: 15.69 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -26.51 -8.65 -35.16 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245589469.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.898 kcal (2) G-P(sol) polarization free energy of solvation -26.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds