Wall clock time and date at job start Tue Mar 31 2020 05:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30837 * 1 3 3 Si 1.86797 * 120.00120 * 2 1 4 4 H 1.48503 * 109.47143 * 275.40883 * 3 2 1 5 5 H 1.48499 * 109.47080 * 35.40870 * 3 2 1 6 6 H 1.48496 * 109.47311 * 155.40861 * 3 2 1 7 7 C 1.39919 * 119.99764 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00253 * 341.74283 * 7 2 1 9 9 C 1.41431 * 119.99845 * 161.73761 * 7 2 1 10 10 C 1.40820 * 120.17700 * 330.17446 * 9 7 2 11 11 C 1.37708 * 120.03455 * 180.02562 * 10 9 7 12 12 C 1.38386 * 120.40150 * 359.72109 * 11 10 9 13 13 C 1.39889 * 120.35257 * 0.56187 * 12 11 10 14 14 C 1.47906 * 120.02055 * 179.71754 * 13 12 11 15 15 C 1.35574 * 125.22593 * 179.68628 * 14 13 12 16 16 C 1.46221 * 106.95097 * 180.02562 * 15 14 13 17 17 C 1.39812 * 133.78121 * 179.97438 * 16 15 14 18 18 C 1.36573 * 119.79977 * 179.74790 * 17 16 15 19 19 C 1.39055 * 120.50303 * 0.55469 * 18 17 16 20 20 F 1.35105 * 119.67829 * 179.71330 * 19 18 17 21 21 C 1.37967 * 120.63550 * 359.44394 * 19 18 17 22 22 C 1.39110 * 119.79407 * 0.26988 * 21 19 18 23 23 N 1.37656 * 125.22299 * 359.71720 * 14 13 12 24 24 H 0.96996 * 125.09784 * 359.95437 * 23 14 13 25 25 C 1.38984 * 119.95946 * 359.43822 * 13 12 11 26 26 H 0.97004 * 120.00016 * 0.02562 * 1 2 3 27 27 H 1.07997 * 119.98497 * 0.04509 * 10 9 7 28 28 H 1.08001 * 119.80186 * 180.02562 * 11 10 9 29 29 H 1.07996 * 119.81888 * 180.29876 * 12 11 10 30 30 H 1.07997 * 126.52417 * 0.04826 * 15 14 13 31 31 H 1.08003 * 120.09913 * 0.02562 * 17 16 15 32 32 H 1.07991 * 119.74606 * 180.29635 * 18 17 16 33 33 H 1.07997 * 120.10513 * 180.25322 * 21 19 18 34 34 H 1.08003 * 120.20118 * 180.30024 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.3756 2.1124 -1.3939 5 1 1.5017 2.6169 0.8112 6 1 3.5924 1.4099 0.5826 7 6 2.0079 -1.2118 0.0005 8 1 1.5087 -2.1234 0.2939 9 6 3.3688 -1.2428 -0.3833 10 6 3.8626 -0.3107 -1.3162 11 6 5.1880 -0.3439 -1.6883 12 6 6.0442 -1.2864 -1.1461 13 6 5.5699 -2.2238 -0.2225 14 6 6.4900 -3.2318 0.3476 15 6 6.1461 -4.1820 1.2515 16 6 7.3538 -4.9551 1.5377 17 6 7.6311 -6.0432 2.3707 18 6 8.8950 -6.5587 2.4158 19 6 9.9120 -6.0023 1.6479 20 9 11.1576 -6.5219 1.7098 21 6 9.6600 -4.9283 0.8193 22 6 8.3783 -4.3916 0.7538 23 7 7.8272 -3.3488 0.0424 24 1 8.3088 -2.7822 -0.5804 25 6 4.2349 -2.2038 0.1636 26 1 -0.4850 0.8401 -0.0004 27 1 3.2015 0.4308 -1.7400 28 1 5.5629 0.3730 -2.4038 29 1 7.0830 -1.3008 -1.4410 30 1 5.1666 -4.3384 1.6785 31 1 6.8471 -6.4776 2.9733 32 1 9.1071 -7.4022 3.0559 33 1 10.4554 -4.5055 0.2235 34 1 3.8657 -2.9227 0.8801 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245589469.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:24 Heat of formation + Delta-G solvation = 7.187059 kcal Electronic energy + Delta-G solvation = -19842.878912 eV Core-core repulsion = 16618.964788 eV Total energy + Delta-G solvation = -3223.914124 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.091 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.85536 -42.24806 -39.58764 -37.61992 -35.52936 -33.26535 -32.54041 -31.86758 -30.49639 -28.61316 -27.09788 -24.59837 -23.33767 -22.90975 -21.97265 -21.25814 -19.60477 -18.95407 -17.90148 -17.32117 -17.06330 -16.60227 -16.51885 -16.20006 -15.56879 -15.41586 -15.34711 -14.85837 -14.63584 -14.32349 -14.22447 -13.89265 -13.79391 -13.41264 -12.90412 -12.79906 -12.64172 -12.35360 -12.11524 -11.99614 -11.71862 -11.47382 -11.09776 -10.82968 -9.83425 -9.59198 -9.09643 -8.90740 -8.42658 -6.53048 -0.26583 0.47057 0.61757 0.76341 1.26232 1.41177 1.47950 1.86953 1.96065 2.12077 2.64319 2.75460 3.37770 3.49801 3.59829 3.74851 4.09718 4.15685 4.22219 4.29433 4.40668 4.43796 4.58947 4.75378 4.85122 4.93572 5.02065 5.06930 5.16380 5.21334 5.37355 5.46615 5.61464 5.69946 5.74247 5.88275 5.94288 6.06192 6.20379 6.35155 6.55749 6.68385 6.79716 8.17724 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.037897 B = 0.003548 C = 0.003332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.665961 B = 7889.371237 C = 8400.892631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.049 3.951 3 Si 0.964 3.036 4 H -0.256 1.256 5 H -0.279 1.279 6 H -0.253 1.253 7 C -0.484 4.484 8 H 0.059 0.941 9 C 0.075 3.925 10 C -0.245 4.245 11 C -0.078 4.078 12 C -0.218 4.218 13 C -0.011 4.011 14 C 0.130 3.870 15 C -0.197 4.197 16 C -0.134 4.134 17 C -0.041 4.041 18 C -0.177 4.177 19 C 0.106 3.894 20 F -0.142 7.142 21 C -0.169 4.169 22 C 0.114 3.886 23 N -0.580 5.580 24 H 0.426 0.574 25 C -0.189 4.189 26 H 0.294 0.706 27 H 0.100 0.900 28 H 0.134 0.866 29 H 0.129 0.871 30 H 0.152 0.848 31 H 0.155 0.845 32 H 0.159 0.841 33 H 0.149 0.851 34 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.735 -6.257 1.829 17.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.166 4.166 3 Si 0.787 3.213 4 H -0.181 1.181 5 H -0.205 1.205 6 H -0.176 1.176 7 C -0.513 4.513 8 H 0.077 0.923 9 C 0.073 3.927 10 C -0.265 4.265 11 C -0.096 4.096 12 C -0.238 4.238 13 C -0.012 4.012 14 C 0.022 3.978 15 C -0.222 4.222 16 C -0.139 4.139 17 C -0.059 4.059 18 C -0.197 4.197 19 C 0.086 3.914 20 F -0.121 7.121 21 C -0.191 4.191 22 C 0.005 3.995 23 N -0.184 5.184 24 H 0.266 0.734 25 C -0.209 4.209 26 H 0.104 0.896 27 H 0.117 0.883 28 H 0.151 0.849 29 H 0.147 0.853 30 H 0.169 0.831 31 H 0.173 0.827 32 H 0.177 0.823 33 H 0.167 0.833 34 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 16.536 -6.099 1.752 17.712 hybrid contribution -0.077 0.841 -0.340 0.911 sum 16.459 -5.257 1.412 17.336 Atomic orbital electron populations 1.69728 1.09188 1.31496 1.37036 1.26798 0.95294 1.04160 0.90348 0.85514 0.79646 0.76611 0.79540 1.18118 1.20549 1.17644 1.19474 0.94417 0.95759 1.41686 0.92269 1.17751 0.92560 0.92021 0.90382 1.21288 0.97060 1.04493 1.03627 1.20899 0.92636 0.97747 0.98328 1.20790 0.99676 0.99675 1.03618 1.18009 0.91778 0.94205 0.97223 1.18859 0.83071 0.97396 0.98435 1.21923 0.98522 0.98411 1.03301 1.19469 0.93218 0.99665 1.01556 1.20440 0.96848 0.92790 0.95839 1.20836 0.92003 1.03719 1.03148 1.17311 0.79994 0.94843 0.99293 1.91478 1.39364 1.85856 1.95407 1.19912 0.95036 0.99471 1.04645 1.17952 0.94075 0.91356 0.96136 1.41733 1.07796 1.29107 1.39742 0.73429 1.21156 0.92078 1.03609 1.04072 0.89560 0.88270 0.84853 0.85345 0.83066 0.82724 0.82335 0.83287 0.87218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -45.79 13.93 21.82 0.30 -45.49 16 2 C 0.05 2.56 5.40 85.25 0.46 3.02 16 3 Si 0.96 41.58 24.52 68.60 1.68 43.26 16 4 H -0.26 -10.34 6.71 99.48 0.67 -9.67 16 5 H -0.28 -11.38 7.11 99.48 0.71 -10.67 16 6 H -0.25 -11.11 6.86 99.48 0.68 -10.43 16 7 C -0.48 -26.49 9.57 23.46 0.22 -26.26 16 8 H 0.06 3.48 8.06 -2.91 -0.02 3.46 16 9 C 0.08 3.71 5.10 -21.32 -0.11 3.60 16 10 C -0.25 -11.02 7.17 22.78 0.16 -10.86 16 11 C -0.08 -2.93 10.01 22.18 0.22 -2.71 16 12 C -0.22 -7.65 9.70 22.71 0.22 -7.43 16 13 C -0.01 -0.43 5.87 -20.14 -0.12 -0.54 16 14 C 0.13 4.28 6.87 40.17 0.28 4.56 16 15 C -0.20 -6.28 10.40 23.73 0.25 -6.03 16 16 C -0.13 -3.74 6.36 -20.20 -0.13 -3.87 16 17 C -0.04 -0.90 10.05 22.26 0.22 -0.68 16 18 C -0.18 -3.53 9.95 22.08 0.22 -3.31 16 19 C 0.11 2.34 7.28 22.40 0.16 2.51 16 20 F -0.14 -3.13 17.25 44.97 0.78 -2.36 16 21 C -0.17 -3.81 10.05 22.41 0.23 -3.58 16 22 C 0.11 3.01 7.26 39.05 0.28 3.30 16 23 N -0.58 -15.58 5.98 -176.94 -1.06 -16.64 16 24 H 0.43 9.06 7.93 -92.71 -0.74 8.33 16 25 C -0.19 -8.40 9.28 22.99 0.21 -8.19 16 26 H 0.29 14.23 8.30 -92.71 -0.77 13.46 16 27 H 0.10 4.46 4.72 -2.91 -0.01 4.45 16 28 H 0.13 4.04 8.06 -2.91 -0.02 4.01 16 29 H 0.13 3.49 7.05 -2.91 -0.02 3.47 16 30 H 0.15 4.66 7.17 -2.91 -0.02 4.64 16 31 H 0.16 2.62 8.06 -2.91 -0.02 2.60 16 32 H 0.16 2.27 8.06 -2.92 -0.02 2.25 16 33 H 0.15 2.68 8.06 -2.91 -0.02 2.65 16 34 H 0.11 4.72 6.89 -2.91 -0.02 4.70 16 Total: -1.00 -59.33 295.01 4.85 -54.48 By element: Atomic # 1 Polarization: 22.87 SS G_CDS: 0.36 Total: 23.23 kcal Atomic # 6 Polarization: -59.28 SS G_CDS: 2.79 Total: -56.50 kcal Atomic # 7 Polarization: -61.37 SS G_CDS: -0.75 Total: -62.12 kcal Atomic # 9 Polarization: -3.13 SS G_CDS: 0.78 Total: -2.36 kcal Atomic # 14 Polarization: 41.58 SS G_CDS: 1.68 Total: 43.26 kcal Total: -59.33 4.85 -54.48 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245589469.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.669 kcal (2) G-P(sol) polarization free energy of solvation -59.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds