Wall clock time and date at job start Tue Mar 31 2020 05:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46495 * 120.00527 * 2 1 4 4 C 1.50707 * 109.47399 * 275.00581 * 3 2 1 5 5 H 1.08004 * 119.99672 * 359.97438 * 4 3 2 6 6 C 1.37873 * 120.00171 * 179.97438 * 4 3 2 7 7 N 1.31514 * 119.99922 * 359.97438 * 6 4 3 8 8 Si 1.86794 * 119.99938 * 179.97438 * 6 4 3 9 9 H 1.48498 * 109.47556 * 89.99620 * 8 6 4 10 10 H 1.48499 * 109.47207 * 209.99798 * 8 6 4 11 11 H 1.48509 * 109.47097 * 329.99625 * 8 6 4 12 12 S 1.65601 * 119.99615 * 180.02562 * 2 1 3 13 13 O 1.42103 * 106.40174 * 156.45893 * 12 2 1 14 14 O 1.42098 * 106.40628 * 23.54108 * 12 2 1 15 15 C 1.76198 * 107.21764 * 269.99686 * 12 2 1 16 16 C 1.32564 * 120.00032 * 115.00395 * 15 12 2 17 17 C 1.47815 * 120.00319 * 179.97438 * 16 15 12 18 18 C 1.39531 * 120.14192 * 179.97438 * 17 16 15 19 19 C 1.37972 * 119.85483 * 179.97438 * 18 17 16 20 20 C 1.38345 * 120.14331 * 359.97438 * 19 18 17 21 21 C 1.38345 * 120.28513 * 0.02562 * 20 19 18 22 22 C 1.37975 * 120.14228 * 0.02562 * 21 20 19 23 23 H 1.08999 * 109.46916 * 269.99998 * 1 2 3 24 24 H 1.09001 * 109.47151 * 29.99663 * 1 2 3 25 25 H 1.08998 * 109.47583 * 149.99972 * 1 2 3 26 26 H 1.09005 * 109.47163 * 35.00005 * 3 2 1 27 27 H 1.08999 * 109.47724 * 155.00053 * 3 2 1 28 28 H 0.97007 * 119.99695 * 179.97438 * 7 6 4 29 29 H 1.08005 * 120.00322 * 294.99838 * 15 12 2 30 30 H 1.08005 * 120.00176 * 359.97438 * 16 15 12 31 31 H 1.08000 * 120.07490 * 359.96214 * 18 17 16 32 32 H 1.08004 * 119.93207 * 180.02562 * 19 18 17 33 33 H 1.07997 * 119.86073 * 179.74273 * 20 19 18 34 34 H 1.08003 * 119.92854 * 179.97438 * 21 20 19 35 35 H 1.07998 * 120.07404 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.3414 1.7657 -1.4154 5 1 1.9288 1.1935 -2.2332 6 6 2.9998 2.9508 -1.6663 7 7 3.5018 3.6478 -0.6704 8 14 3.1787 3.5665 -3.4208 9 1 2.0179 4.4265 -3.7645 10 1 4.4317 4.3540 -3.5437 11 1 3.2289 2.4084 -4.3491 12 16 2.2929 -1.4342 -0.0006 13 8 3.5758 -1.1567 -0.5450 14 8 1.4112 -2.4063 -0.5455 15 6 2.5537 -1.8866 1.6822 16 6 1.9824 -2.9783 2.1712 17 6 2.2017 -3.3582 3.5828 18 6 1.6014 -4.5064 4.1007 19 6 1.8105 -4.8557 5.4190 20 6 2.6137 -4.0706 6.2267 21 6 3.2117 -2.9310 5.7193 22 6 3.0098 -2.5701 4.4030 23 1 -0.3633 0.0000 1.0277 24 1 -0.3633 0.8900 -0.5138 25 1 -0.3634 -0.8899 -0.5138 26 1 1.6502 2.0043 0.5895 27 1 3.1858 1.1176 0.4343 28 1 3.9654 4.4814 -0.8470 29 1 3.1790 -1.2745 2.3153 30 1 1.3568 -3.5903 1.5383 31 1 0.9743 -5.1202 3.4711 32 1 1.3468 -5.7444 5.8211 33 1 2.7709 -4.3461 7.2591 34 1 3.8374 -2.3221 6.3552 35 1 3.4776 -1.6804 4.0079 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001252952706.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:36 Heat of formation + Delta-G solvation = -27.290888 kcal Electronic energy + Delta-G solvation = -19212.865129 eV Core-core repulsion = 16110.527090 eV Total energy + Delta-G solvation = -3102.338038 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.43302 -36.60117 -35.49624 -35.16333 -34.47415 -32.42481 -31.24179 -29.70100 -27.76183 -25.09093 -23.91543 -22.74712 -22.26411 -20.44737 -18.06790 -17.52736 -16.80342 -16.54237 -16.16193 -15.56783 -15.27060 -14.78465 -14.42116 -13.95765 -13.62564 -13.35616 -13.30606 -13.23369 -12.48233 -12.27626 -12.15376 -11.63651 -11.59968 -11.41899 -11.20092 -11.13294 -11.05817 -10.86470 -10.66227 -10.52732 -10.40044 -10.00144 -9.73218 -9.20630 -8.67054 -8.43493 -8.04523 -6.05446 -4.09409 0.41588 1.07142 1.15824 2.02661 3.33057 3.39462 3.45474 3.61730 3.75857 4.26514 4.45511 4.54061 4.63582 4.71447 4.85820 5.01814 5.13875 5.24041 5.26929 5.30131 5.66610 5.66914 5.76137 5.97229 6.02422 6.02982 6.18626 6.24274 6.30141 6.52372 6.56966 6.70933 7.21529 7.38675 7.58980 7.92009 8.20563 8.92995 9.55766 11.03248 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.030502 B = 0.004023 C = 0.003797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.763405 B = 6957.675555 C = 7372.556971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.987 5.987 3 C 0.253 3.747 4 C -0.529 4.529 5 H 0.062 0.938 6 C 0.062 3.938 7 N -0.896 5.896 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.272 1.272 12 S 2.678 3.322 13 O -0.942 6.942 14 O -0.982 6.982 15 C -0.733 4.733 16 C 0.028 3.972 17 C -0.084 4.084 18 C -0.095 4.095 19 C -0.127 4.127 20 C -0.109 4.109 21 C -0.124 4.124 22 C -0.093 4.093 23 H 0.039 0.961 24 H 0.080 0.920 25 H 0.068 0.932 26 H 0.037 0.963 27 H 0.040 0.960 28 H 0.264 0.736 29 H 0.158 0.842 30 H 0.143 0.857 31 H 0.130 0.870 32 H 0.126 0.874 33 H 0.123 0.877 34 H 0.127 0.873 35 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.630 -13.736 12.822 19.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.827 5.827 3 C 0.131 3.869 4 C -0.568 4.568 5 H 0.080 0.920 6 C -0.140 4.140 7 N -0.536 5.536 8 Si 0.725 3.275 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.196 1.196 12 S 2.767 3.233 13 O -0.932 6.932 14 O -0.973 6.973 15 C -0.837 4.837 16 C 0.008 3.992 17 C -0.086 4.086 18 C -0.113 4.113 19 C -0.145 4.145 20 C -0.127 4.127 21 C -0.142 4.142 22 C -0.110 4.110 23 H 0.058 0.942 24 H 0.098 0.902 25 H 0.087 0.913 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.073 0.927 29 H 0.176 0.824 30 H 0.160 0.840 31 H 0.148 0.852 32 H 0.144 0.856 33 H 0.141 0.859 34 H 0.145 0.855 35 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -4.250 -14.003 12.167 19.031 hybrid contribution 0.205 0.662 0.033 0.693 sum -4.046 -13.341 12.201 18.526 Atomic orbital electron populations 1.21387 0.79823 1.03664 1.00381 1.57285 1.14274 1.22453 1.88724 1.19141 0.91178 0.78638 0.97909 1.21497 1.36150 1.06300 0.92882 0.92012 1.24934 0.95075 0.96499 0.97541 1.69922 1.37369 1.15294 1.30966 0.86495 0.77507 0.78840 0.84620 1.20630 1.21063 1.19637 1.02286 0.73879 0.72756 0.74362 1.93623 1.39988 1.83954 1.75677 1.93483 1.66616 1.60385 1.76804 1.34498 1.11820 1.07528 1.29832 1.21983 0.91115 0.93247 0.92851 1.19294 0.99300 0.96197 0.93781 1.21398 0.98492 0.95672 0.95725 1.21121 0.99316 1.00145 0.93929 1.21311 0.96685 0.94864 0.99856 1.21168 1.00266 0.97333 0.95462 1.21520 0.96648 0.99206 0.93664 0.94222 0.90166 0.91342 0.94487 0.94208 0.92679 0.82408 0.83959 0.85244 0.85644 0.85852 0.85545 0.85117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.59 10.68 59.84 0.64 2.23 16 2 N -0.99 -20.39 3.17 -123.06 -0.39 -20.78 16 3 C 0.25 6.32 5.08 -5.19 -0.03 6.30 16 4 C -0.53 -14.84 9.38 -34.44 -0.32 -15.16 16 5 H 0.06 1.73 7.81 -52.48 -0.41 1.32 16 6 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 7 N -0.90 -26.13 13.29 55.43 0.74 -25.40 16 8 Si 0.90 21.83 29.54 -169.99 -5.02 16.81 16 9 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 10 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 12 S 2.68 52.71 5.80 -107.50 -0.62 52.08 16 13 O -0.94 -22.61 16.99 -57.17 -0.97 -23.58 16 14 O -0.98 -19.46 15.49 -57.17 -0.89 -20.35 16 15 C -0.73 -11.59 9.74 28.82 0.28 -11.31 16 16 C 0.03 0.38 9.42 -37.57 -0.35 0.03 16 17 C -0.08 -1.05 5.87 -105.01 -0.62 -1.66 16 18 C -0.09 -0.97 9.79 -39.20 -0.38 -1.35 16 19 C -0.13 -1.12 10.03 -39.64 -0.40 -1.51 16 20 C -0.11 -0.96 10.04 -39.50 -0.40 -1.35 16 21 C -0.12 -1.23 10.03 -39.64 -0.40 -1.63 16 22 C -0.09 -1.11 9.40 -39.19 -0.37 -1.48 16 23 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.08 1.38 8.07 -51.93 -0.42 0.96 16 25 H 0.07 1.07 7.02 -51.93 -0.36 0.71 16 26 H 0.04 0.93 8.11 -51.93 -0.42 0.51 16 27 H 0.04 1.05 7.61 -51.93 -0.40 0.65 16 28 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 29 H 0.16 2.35 6.04 -52.48 -0.32 2.03 16 30 H 0.14 1.77 7.21 -52.48 -0.38 1.39 16 31 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 32 H 0.13 0.78 8.06 -52.48 -0.42 0.36 16 33 H 0.12 0.77 8.06 -52.49 -0.42 0.34 16 34 H 0.13 0.99 8.06 -52.48 -0.42 0.57 16 35 H 0.13 1.53 6.17 -52.49 -0.32 1.21 16 LS Contribution 317.24 15.07 4.78 4.78 Total: -1.00 -33.71 317.24 -9.09 -42.80 By element: Atomic # 1 Polarization: 3.16 SS G_CDS: -4.28 Total: -1.12 kcal Atomic # 6 Polarization: -22.81 SS G_CDS: -2.44 Total: -25.25 kcal Atomic # 7 Polarization: -46.52 SS G_CDS: 0.35 Total: -46.17 kcal Atomic # 8 Polarization: -42.07 SS G_CDS: -1.86 Total: -43.93 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Atomic # 16 Polarization: 52.71 SS G_CDS: -0.62 Total: 52.08 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -33.71 -9.09 -42.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001252952706.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.509 kcal (2) G-P(sol) polarization free energy of solvation -33.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds