Wall clock time and date at job start Tue Mar 31 2020 05:02:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46495 * 120.00527 * 2 1 4 4 C 1.50707 * 109.47399 * 275.00581 * 3 2 1 5 5 H 1.08004 * 119.99672 * 359.97438 * 4 3 2 6 6 C 1.37873 * 120.00171 * 179.97438 * 4 3 2 7 7 N 1.31514 * 119.99922 * 359.97438 * 6 4 3 8 8 Si 1.86794 * 119.99938 * 179.97438 * 6 4 3 9 9 H 1.48498 * 109.47556 * 89.99620 * 8 6 4 10 10 H 1.48499 * 109.47207 * 209.99798 * 8 6 4 11 11 H 1.48509 * 109.47097 * 329.99625 * 8 6 4 12 12 S 1.65601 * 119.99615 * 180.02562 * 2 1 3 13 13 O 1.42103 * 106.40174 * 156.45893 * 12 2 1 14 14 O 1.42098 * 106.40628 * 23.54108 * 12 2 1 15 15 C 1.76198 * 107.21764 * 269.99686 * 12 2 1 16 16 C 1.32564 * 120.00032 * 115.00395 * 15 12 2 17 17 C 1.47815 * 120.00319 * 179.97438 * 16 15 12 18 18 C 1.39531 * 120.14192 * 179.97438 * 17 16 15 19 19 C 1.37972 * 119.85483 * 179.97438 * 18 17 16 20 20 C 1.38345 * 120.14331 * 359.97438 * 19 18 17 21 21 C 1.38345 * 120.28513 * 0.02562 * 20 19 18 22 22 C 1.37975 * 120.14228 * 0.02562 * 21 20 19 23 23 H 1.08999 * 109.46916 * 269.99998 * 1 2 3 24 24 H 1.09001 * 109.47151 * 29.99663 * 1 2 3 25 25 H 1.08998 * 109.47583 * 149.99972 * 1 2 3 26 26 H 1.09005 * 109.47163 * 35.00005 * 3 2 1 27 27 H 1.08999 * 109.47724 * 155.00053 * 3 2 1 28 28 H 0.97007 * 119.99695 * 179.97438 * 7 6 4 29 29 H 1.08005 * 120.00322 * 294.99838 * 15 12 2 30 30 H 1.08005 * 120.00176 * 359.97438 * 16 15 12 31 31 H 1.08000 * 120.07490 * 359.96214 * 18 17 16 32 32 H 1.08004 * 119.93207 * 180.02562 * 19 18 17 33 33 H 1.07997 * 119.86073 * 179.74273 * 20 19 18 34 34 H 1.08003 * 119.92854 * 179.97438 * 21 20 19 35 35 H 1.07998 * 120.07404 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.3414 1.7657 -1.4154 5 1 1.9288 1.1935 -2.2332 6 6 2.9998 2.9508 -1.6663 7 7 3.5018 3.6478 -0.6704 8 14 3.1787 3.5665 -3.4208 9 1 2.0179 4.4265 -3.7645 10 1 4.4317 4.3540 -3.5437 11 1 3.2289 2.4084 -4.3491 12 16 2.2929 -1.4342 -0.0006 13 8 3.5758 -1.1567 -0.5450 14 8 1.4112 -2.4063 -0.5455 15 6 2.5537 -1.8866 1.6822 16 6 1.9824 -2.9783 2.1712 17 6 2.2017 -3.3582 3.5828 18 6 1.6014 -4.5064 4.1007 19 6 1.8105 -4.8557 5.4190 20 6 2.6137 -4.0706 6.2267 21 6 3.2117 -2.9310 5.7193 22 6 3.0098 -2.5701 4.4030 23 1 -0.3633 0.0000 1.0277 24 1 -0.3633 0.8900 -0.5138 25 1 -0.3634 -0.8899 -0.5138 26 1 1.6502 2.0043 0.5895 27 1 3.1858 1.1176 0.4343 28 1 3.9654 4.4814 -0.8470 29 1 3.1790 -1.2745 2.3153 30 1 1.3568 -3.5903 1.5383 31 1 0.9743 -5.1202 3.4711 32 1 1.3468 -5.7444 5.8211 33 1 2.7709 -4.3461 7.2591 34 1 3.8374 -2.3221 6.3552 35 1 3.4776 -1.6804 4.0079 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001252952706.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:35 Heat of formation + Delta-G solvation = -49.610976 kcal Electronic energy + Delta-G solvation = -19213.833000 eV Core-core repulsion = 16110.527090 eV Total energy + Delta-G solvation = -3103.305910 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.22601 -38.23369 -37.22217 -36.83099 -35.50873 -34.50221 -31.99150 -30.62339 -29.66003 -26.79696 -24.91236 -24.17842 -23.51856 -21.46581 -19.60284 -18.78601 -18.51667 -18.06597 -17.55838 -17.10183 -16.42066 -16.18927 -15.67442 -15.20096 -14.94574 -14.71336 -14.33593 -14.11234 -14.03353 -13.91279 -13.60424 -13.29690 -13.11038 -13.03151 -12.89781 -12.45122 -12.44840 -12.37484 -12.05500 -11.95075 -11.80752 -11.79170 -11.67771 -10.58944 -9.95703 -9.77843 -9.55998 -8.20062 -6.32147 -0.63437 -0.38771 0.41087 1.05020 1.39812 1.42429 1.53249 2.18215 2.42378 2.81538 2.86990 3.10971 3.41456 3.63655 3.81439 4.01729 4.12033 4.13467 4.24363 4.45698 4.47773 4.73722 4.75504 4.85848 4.88295 5.05731 5.08075 5.09915 5.19851 5.44523 5.45835 5.50704 5.59490 5.69983 5.91191 5.97374 6.10095 6.76044 7.36654 8.87711 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.030502 B = 0.004023 C = 0.003797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.763405 B = 6957.675555 C = 7372.556971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.997 5.997 3 C 0.266 3.734 4 C -0.550 4.550 5 H 0.054 0.946 6 C 0.011 3.989 7 N -0.925 5.925 8 Si 0.959 3.041 9 H -0.264 1.264 10 H -0.278 1.278 11 H -0.274 1.274 12 S 2.688 3.312 13 O -0.997 6.997 14 O -0.989 6.989 15 C -0.752 4.752 16 C 0.059 3.941 17 C -0.118 4.118 18 C -0.093 4.093 19 C -0.128 4.128 20 C -0.100 4.100 21 C -0.135 4.135 22 C -0.111 4.111 23 H 0.070 0.930 24 H 0.073 0.927 25 H 0.081 0.919 26 H 0.031 0.969 27 H 0.018 0.982 28 H 0.268 0.732 29 H 0.161 0.839 30 H 0.157 0.843 31 H 0.151 0.849 32 H 0.158 0.842 33 H 0.155 0.845 34 H 0.143 0.857 35 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.737 -15.494 14.432 21.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.836 5.836 3 C 0.143 3.857 4 C -0.590 4.590 5 H 0.072 0.928 6 C -0.189 4.189 7 N -0.565 5.565 8 Si 0.783 3.217 9 H -0.189 1.189 10 H -0.204 1.204 11 H -0.198 1.198 12 S 2.782 3.218 13 O -0.987 6.987 14 O -0.979 6.979 15 C -0.861 4.861 16 C 0.039 3.961 17 C -0.119 4.119 18 C -0.111 4.111 19 C -0.146 4.146 20 C -0.117 4.117 21 C -0.153 4.153 22 C -0.129 4.129 23 H 0.089 0.911 24 H 0.092 0.908 25 H 0.100 0.900 26 H 0.049 0.951 27 H 0.036 0.964 28 H 0.077 0.923 29 H 0.179 0.821 30 H 0.175 0.825 31 H 0.169 0.831 32 H 0.176 0.824 33 H 0.172 0.828 34 H 0.161 0.839 35 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -5.392 -15.747 13.728 21.575 hybrid contribution 0.498 1.012 -0.236 1.152 sum -4.894 -14.735 13.491 20.569 Atomic orbital electron populations 1.21623 0.77723 1.03977 1.02555 1.57158 1.15711 1.21165 1.89551 1.18705 0.90590 0.80256 0.96192 1.21853 1.36331 1.06661 0.94121 0.92762 1.25772 0.94729 0.96741 1.01626 1.70015 1.37905 1.15727 1.32866 0.85543 0.78142 0.78310 0.79657 1.18948 1.20367 1.19843 1.01540 0.72575 0.72192 0.75467 1.93549 1.42388 1.84663 1.78144 1.93456 1.66370 1.60024 1.78069 1.33705 1.15534 1.09898 1.27012 1.22317 0.88386 0.91415 0.93935 1.19334 1.01588 0.98076 0.92926 1.21731 0.97813 0.94707 0.96808 1.21550 0.98800 1.00994 0.93244 1.21766 0.94995 0.93655 1.01315 1.21449 1.00733 0.98271 0.94823 1.21660 0.97095 0.99258 0.94888 0.91116 0.90822 0.90044 0.95069 0.96398 0.92339 0.82109 0.82526 0.83104 0.82446 0.82778 0.83874 0.86133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.90 10.68 127.77 1.36 4.26 16 2 N -1.00 -42.27 3.17 -543.24 -1.72 -43.99 16 3 C 0.27 13.84 5.08 85.64 0.43 14.28 16 4 C -0.55 -31.80 9.38 25.60 0.24 -31.56 16 5 H 0.05 3.13 7.81 -2.91 -0.02 3.10 16 6 C 0.01 0.61 5.46 84.65 0.46 1.08 16 7 N -0.93 -55.04 13.29 21.45 0.28 -54.76 16 8 Si 0.96 45.20 29.54 68.60 2.03 47.23 16 9 H -0.26 -11.72 7.11 99.48 0.71 -11.02 16 10 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 11 H -0.27 -12.87 7.11 99.48 0.71 -12.16 16 12 S 2.69 108.95 5.80 -56.49 -0.33 108.62 16 13 O -1.00 -50.35 16.99 -128.00 -2.17 -52.53 16 14 O -0.99 -39.22 15.49 -128.00 -1.98 -41.21 16 15 C -0.75 -24.19 9.74 66.67 0.65 -23.54 16 16 C 0.06 1.58 9.42 23.66 0.22 1.80 16 17 C -0.12 -2.73 5.87 -20.12 -0.12 -2.85 16 18 C -0.09 -1.59 9.79 22.52 0.22 -1.37 16 19 C -0.13 -1.72 10.03 22.23 0.22 -1.50 16 20 C -0.10 -1.36 10.04 22.32 0.22 -1.14 16 21 C -0.13 -2.38 10.03 22.23 0.22 -2.16 16 22 C -0.11 -2.56 9.40 22.52 0.21 -2.35 16 23 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 24 H 0.07 2.54 8.07 -2.39 -0.02 2.52 16 25 H 0.08 2.50 7.02 -2.39 -0.02 2.48 16 26 H 0.03 1.63 8.11 -2.38 -0.02 1.61 16 27 H 0.02 1.00 7.61 -2.39 -0.02 0.98 16 28 H 0.27 14.92 8.31 -92.70 -0.77 14.15 16 29 H 0.16 5.04 6.04 -2.91 -0.02 5.03 16 30 H 0.16 3.62 7.21 -2.91 -0.02 3.60 16 31 H 0.15 1.85 8.06 -2.91 -0.02 1.83 16 32 H 0.16 1.11 8.06 -2.91 -0.02 1.09 16 33 H 0.15 1.15 8.06 -2.91 -0.02 1.13 16 34 H 0.14 1.94 8.06 -2.91 -0.02 1.92 16 35 H 0.12 2.92 6.17 -2.91 -0.02 2.90 16 Total: -1.00 -74.18 317.24 1.55 -72.63 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: 1.08 Total: 9.04 kcal Atomic # 6 Polarization: -49.40 SS G_CDS: 4.36 Total: -45.04 kcal Atomic # 7 Polarization: -97.31 SS G_CDS: -1.44 Total: -98.74 kcal Atomic # 8 Polarization: -89.58 SS G_CDS: -4.16 Total: -93.73 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Atomic # 16 Polarization: 108.95 SS G_CDS: -0.33 Total: 108.62 kcal Total: -74.18 1.55 -72.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001252952706.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.019 kcal (2) G-P(sol) polarization free energy of solvation -74.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds