Wall clock time and date at job start Tue Mar 31 2020 05:13:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81393 * 1 3 3 O 1.42109 * 109.46987 * 2 1 4 4 C 1.81405 * 102.99982 * 243.61564 * 2 1 3 5 5 C 1.50694 * 109.47426 * 179.97438 * 4 2 1 6 6 C 1.38382 * 119.93006 * 270.00332 * 5 4 2 7 7 C 1.38336 * 120.29530 * 179.97438 * 6 5 4 8 8 C 1.37979 * 120.14494 * 359.97438 * 7 6 5 9 9 C 1.39555 * 119.85229 * 359.97438 * 8 7 6 10 10 C 1.47845 * 120.14783 * 180.02562 * 9 8 7 11 11 O 1.21557 * 120.00384 * 179.97438 * 10 9 8 12 12 N 1.34780 * 119.99555 * 359.97438 * 10 9 8 13 13 C 1.46508 * 119.99852 * 180.02562 * 12 10 9 14 14 C 1.50694 * 109.46844 * 179.97438 * 13 12 10 15 15 H 1.07999 * 120.00716 * 359.97438 * 14 13 12 16 16 C 1.37882 * 119.99874 * 179.97438 * 14 13 12 17 17 N 1.31509 * 120.00360 * 180.02562 * 16 14 13 18 18 Si 1.86804 * 119.99805 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.46845 * 89.99659 * 18 16 14 20 20 H 1.48495 * 109.47107 * 209.99680 * 18 16 14 21 21 H 1.48498 * 109.47258 * 330.00003 * 18 16 14 22 22 C 1.37944 * 119.92822 * 89.99713 * 5 4 2 23 23 H 1.09000 * 109.47124 * 176.39089 * 1 2 3 24 24 H 1.09010 * 109.47058 * 296.38398 * 1 2 3 25 25 H 1.08998 * 109.47369 * 56.38235 * 1 2 3 26 26 H 1.08996 * 109.46939 * 59.99871 * 4 2 1 27 27 H 1.08998 * 109.47184 * 300.00008 * 4 2 1 28 28 H 1.08003 * 119.85370 * 359.97438 * 6 5 4 29 29 H 1.07997 * 119.92795 * 179.97438 * 7 6 5 30 30 H 1.08003 * 120.07844 * 180.02562 * 8 7 6 31 31 H 0.97002 * 120.00216 * 359.97438 * 12 10 9 32 32 H 1.08996 * 109.46720 * 299.99534 * 13 12 10 33 33 H 1.08996 * 109.46989 * 59.99387 * 13 12 10 34 34 H 0.96997 * 120.00105 * 179.97438 * 17 16 14 35 35 H 1.07998 * 120.06717 * 0.28112 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.2876 1.3398 0.0000 4 6 2.2220 -0.7855 -1.5834 5 6 3.7193 -0.8604 -1.7359 6 6 4.4048 0.1796 -2.3388 7 6 5.7794 0.1189 -2.4822 8 6 6.4761 -0.9804 -2.0239 9 6 5.7910 -2.0322 -1.4140 10 6 6.5310 -3.2129 -0.9199 11 8 5.9317 -4.1273 -0.3887 12 7 7.8702 -3.2753 -1.0586 13 6 8.6035 -4.4456 -0.5696 14 6 10.0744 -4.2678 -0.8451 15 1 10.4277 -3.3729 -1.3358 16 6 10.9692 -5.2477 -0.4707 17 7 12.2529 -5.0925 -0.7107 18 14 10.3582 -6.7959 0.3773 19 1 10.0384 -7.8260 -0.6434 20 1 11.4128 -7.3111 1.2870 21 1 9.1376 -6.4814 1.1624 22 6 4.4037 -1.9655 -1.2742 23 1 -0.3633 -1.0256 -0.0647 24 1 -0.3634 0.4567 0.9207 25 1 -0.3634 0.5689 -0.8558 26 1 1.8030 -0.1969 -2.3996 27 1 1.8031 -1.7914 -1.6086 28 1 3.8643 1.0425 -2.6990 29 1 6.3084 0.9337 -2.9540 30 1 7.5493 -1.0264 -2.1360 31 1 8.3484 -2.5457 -1.4829 32 1 8.4447 -4.5514 0.5035 33 1 8.2439 -5.3390 -1.0800 34 1 12.8824 -5.7817 -0.4470 35 1 3.8670 -2.7785 -0.8079 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001256175787.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:51 Heat of formation + Delta-G solvation = -51.856344 kcal Electronic energy + Delta-G solvation = -18691.721049 eV Core-core repulsion = 15588.317772 eV Total energy + Delta-G solvation = -3103.403277 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.91293 -38.13070 -35.94980 -34.43045 -33.16972 -32.26291 -31.10051 -29.36344 -28.13467 -26.99363 -23.95512 -21.91996 -21.74757 -19.82294 -18.04678 -17.56454 -16.63176 -15.87474 -15.79194 -15.64611 -15.22047 -14.89941 -14.57323 -14.42531 -14.16361 -13.88050 -13.42646 -13.15347 -12.91661 -12.83743 -12.68606 -12.34234 -12.15218 -11.93721 -11.68520 -11.21149 -11.03525 -10.78827 -10.65070 -9.98509 -9.51724 -9.37265 -9.02586 -8.97549 -8.79174 -8.35116 -8.17032 -6.22456 -4.25163 0.77382 1.07543 1.53073 2.31221 3.18819 3.26596 3.33218 3.41172 3.48103 3.87781 4.03867 4.32570 4.39378 4.61628 4.75220 4.87634 4.91571 4.98918 5.12872 5.17173 5.27386 5.36410 5.52016 5.54160 5.79168 5.92126 6.32786 6.34918 6.36801 6.76405 6.83593 7.04701 7.16760 7.35819 8.10085 8.46809 8.72276 8.85711 9.37053 10.89442 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.033123 B = 0.003308 C = 0.003113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.120714 B = 8462.439361 C = 8992.067639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.496 4.496 2 S 1.250 4.750 3 O -0.842 6.842 4 C -0.402 4.402 5 C -0.084 4.084 6 C -0.093 4.093 7 C -0.122 4.122 8 C -0.085 4.085 9 C -0.119 4.119 10 C 0.542 3.458 11 O -0.553 6.553 12 N -0.698 5.698 13 C 0.220 3.780 14 C -0.545 4.545 15 H 0.079 0.921 16 C 0.078 3.922 17 N -0.892 5.892 18 Si 0.877 3.123 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.260 1.260 22 C -0.059 4.059 23 H 0.113 0.887 24 H 0.105 0.895 25 H 0.078 0.922 26 H 0.094 0.906 27 H 0.129 0.871 28 H 0.120 0.880 29 H 0.129 0.871 30 H 0.132 0.868 31 H 0.396 0.604 32 H 0.028 0.972 33 H 0.023 0.977 34 H 0.268 0.732 35 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.523 8.865 -0.899 23.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.653 4.653 2 S 1.448 4.552 3 O -0.838 6.838 4 C -0.538 4.538 5 C -0.085 4.085 6 C -0.112 4.112 7 C -0.140 4.140 8 C -0.104 4.104 9 C -0.122 4.122 10 C 0.328 3.672 11 O -0.434 6.434 12 N -0.346 5.346 13 C 0.098 3.902 14 C -0.583 4.583 15 H 0.097 0.903 16 C -0.126 4.126 17 N -0.529 5.529 18 Si 0.703 3.297 19 H -0.198 1.198 20 H -0.209 1.209 21 H -0.184 1.184 22 C -0.079 4.079 23 H 0.132 0.868 24 H 0.124 0.876 25 H 0.097 0.903 26 H 0.113 0.887 27 H 0.147 0.853 28 H 0.138 0.862 29 H 0.147 0.853 30 H 0.150 0.850 31 H 0.231 0.769 32 H 0.046 0.954 33 H 0.041 0.959 34 H 0.078 0.922 35 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -21.141 8.475 0.208 22.778 hybrid contribution -0.758 0.727 -1.689 1.989 sum -21.899 9.202 -1.482 23.800 Atomic orbital electron populations 1.27711 1.22364 1.08065 1.07141 1.71105 0.85857 0.99116 0.99089 1.93136 1.73301 1.36521 1.80824 1.26654 0.97908 1.11082 1.18120 1.18951 0.92699 0.95424 1.01422 1.21184 0.94677 0.97647 0.97695 1.21063 0.93971 0.98341 1.00612 1.21481 1.00388 0.92798 0.95747 1.20184 0.94400 0.95742 1.01902 1.18248 0.82873 0.86158 0.79955 1.90712 1.68560 1.39133 1.44983 1.46159 1.05930 1.23398 1.59091 1.19545 0.91861 0.83783 0.95031 1.21079 0.88818 1.07033 1.41382 0.90253 1.24797 0.94618 0.98286 0.94905 1.69876 1.01662 1.34851 1.46506 0.86808 0.79252 0.83317 0.80276 1.19837 1.20893 1.18392 1.21145 0.92987 0.96969 0.96793 0.86820 0.87627 0.90276 0.88702 0.85257 0.86183 0.85333 0.85000 0.76868 0.95380 0.95911 0.92225 0.83946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.50 -2.61 10.74 101.05 1.09 -1.52 16 2 S 1.25 9.20 13.78 -107.50 -1.48 7.72 16 3 O -0.84 -11.83 18.14 -35.23 -0.64 -12.47 16 4 C -0.40 -3.06 6.05 36.00 0.22 -2.84 16 5 C -0.08 -0.93 5.13 -104.68 -0.54 -1.47 16 6 C -0.09 -1.08 9.69 -39.49 -0.38 -1.47 16 7 C -0.12 -1.42 10.03 -39.64 -0.40 -1.82 16 8 C -0.08 -1.12 9.54 -39.19 -0.37 -1.49 16 9 C -0.12 -1.81 5.87 -104.97 -0.62 -2.42 16 10 C 0.54 10.41 7.77 -12.33 -0.10 10.32 16 11 O -0.55 -12.20 16.35 5.32 0.09 -12.11 16 12 N -0.70 -14.14 5.50 -62.43 -0.34 -14.48 16 13 C 0.22 5.33 4.50 -5.19 -0.02 5.31 16 14 C -0.55 -14.79 9.83 -34.44 -0.34 -15.13 16 15 H 0.08 2.24 7.84 -52.49 -0.41 1.82 16 16 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 17 N -0.89 -26.25 13.96 55.43 0.77 -25.48 16 18 Si 0.88 21.10 27.47 -169.99 -4.67 16.43 16 19 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.26 -6.17 6.54 56.52 0.37 -5.80 16 22 C -0.06 -0.75 9.24 -39.18 -0.36 -1.12 16 23 H 0.11 0.31 8.14 -51.92 -0.42 -0.11 16 24 H 0.10 0.53 8.14 -51.92 -0.42 0.11 16 25 H 0.08 0.49 8.14 -51.92 -0.42 0.07 16 26 H 0.09 0.71 8.08 -51.93 -0.42 0.29 16 27 H 0.13 0.63 8.08 -51.92 -0.42 0.21 16 28 H 0.12 1.28 8.06 -52.48 -0.42 0.85 16 29 H 0.13 1.20 8.06 -52.49 -0.42 0.77 16 30 H 0.13 1.58 6.41 -52.48 -0.34 1.24 16 31 H 0.40 7.08 6.36 -40.82 -0.26 6.82 16 32 H 0.03 0.71 7.20 -51.93 -0.37 0.34 16 33 H 0.02 0.57 7.57 -51.93 -0.39 0.18 16 34 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 35 H 0.14 1.64 7.65 -52.49 -0.40 1.24 16 LS Contribution 317.86 15.07 4.79 4.79 Total: -1.00 -36.75 317.86 -7.70 -44.45 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -4.30 Total: 2.72 kcal Atomic # 6 Polarization: -9.65 SS G_CDS: -1.92 Total: -11.57 kcal Atomic # 7 Polarization: -40.39 SS G_CDS: 0.43 Total: -39.96 kcal Atomic # 8 Polarization: -24.03 SS G_CDS: -0.55 Total: -24.58 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.67 Total: 16.43 kcal Atomic # 16 Polarization: 9.20 SS G_CDS: -1.48 Total: 7.72 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -36.75 -7.70 -44.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256175787.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.406 kcal (2) G-P(sol) polarization free energy of solvation -36.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds