Wall clock time and date at job start Tue Mar 31 2020 05:13:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 O 1.42099 * 109.47018 * 2 1 4 4 C 1.81397 * 103.00143 * 116.38922 * 2 1 3 5 5 C 1.50695 * 109.47452 * 180.02562 * 4 2 1 6 6 C 1.38384 * 119.92779 * 269.72489 * 5 4 2 7 7 C 1.38336 * 120.29298 * 179.76376 * 6 5 4 8 8 C 1.37978 * 120.14476 * 0.50801 * 7 6 5 9 9 C 1.39551 * 119.85161 * 359.74798 * 8 7 6 10 10 C 1.47848 * 120.14361 * 180.02562 * 9 8 7 11 11 O 1.21554 * 120.00005 * 179.97438 * 10 9 8 12 12 N 1.34772 * 119.99923 * 359.97438 * 10 9 8 13 13 C 1.46494 * 119.99929 * 180.02562 * 12 10 9 14 14 C 1.50701 * 109.47442 * 179.97438 * 13 12 10 15 15 H 1.08008 * 119.99826 * 0.02562 * 14 13 12 16 16 C 1.37873 * 120.00367 * 179.97438 * 14 13 12 17 17 N 1.31513 * 120.00285 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 120.00220 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.46801 * 60.00292 * 18 16 14 20 20 H 1.48492 * 109.47441 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47036 * 300.00940 * 18 16 14 22 22 C 1.37933 * 119.92834 * 89.99490 * 5 4 2 23 23 H 1.09002 * 109.47124 * 303.61165 * 1 2 3 24 24 H 1.09001 * 109.46975 * 183.61287 * 1 2 3 25 25 H 1.09004 * 109.47147 * 63.61250 * 1 2 3 26 26 H 1.09007 * 109.46846 * 299.99983 * 4 2 1 27 27 H 1.09007 * 109.47453 * 59.99610 * 4 2 1 28 28 H 1.08000 * 119.85112 * 359.97438 * 6 5 4 29 29 H 1.08007 * 119.92690 * 180.25579 * 7 6 5 30 30 H 1.07994 * 120.07293 * 179.76846 * 8 7 6 31 31 H 0.96996 * 120.00084 * 0.02562 * 12 10 9 32 32 H 1.09002 * 109.47369 * 300.00074 * 13 12 10 33 33 H 1.09007 * 109.47749 * 60.00108 * 13 12 10 34 34 H 0.97000 * 120.00029 * 179.97438 * 17 16 14 35 35 H 1.07996 * 120.07417 * 359.96419 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2877 1.3397 0.0000 4 6 2.2221 -0.7856 1.5833 5 6 3.7195 -0.8605 1.7358 6 6 4.4054 -1.9717 1.2776 7 6 5.7804 -2.0462 1.4093 8 6 6.4760 -1.0162 2.0085 9 6 5.7898 0.1048 2.4775 10 6 6.5287 1.2124 3.1202 11 8 5.9285 2.1879 3.5273 12 7 7.8678 1.1406 3.2545 13 6 8.5999 2.2379 3.8918 14 6 10.0710 1.9121 3.9177 15 1 10.4253 0.9809 3.5007 16 6 10.9648 2.8031 4.4727 17 7 10.5336 3.9372 4.9801 18 14 12.7885 2.3996 4.5041 19 1 13.2792 2.2180 3.1143 20 1 13.5306 3.5117 5.1502 21 1 13.0053 1.1478 5.2731 22 6 4.4028 0.1761 2.3367 23 1 -0.3633 0.5689 0.8559 24 1 -0.3633 -1.0256 0.0648 25 1 -0.3634 0.4568 -0.9206 26 1 1.8032 -0.1970 2.3996 27 1 1.8032 -1.7916 1.6085 28 1 3.8651 -2.7827 0.8121 29 1 6.3102 -2.9144 1.0458 30 1 7.5490 -1.0773 2.1141 31 1 8.3468 0.3624 2.9293 32 1 8.4408 3.1569 3.3276 33 1 8.2397 2.3710 4.9120 34 1 11.1624 4.5639 5.3709 35 1 3.8659 1.0410 2.6973 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001256175793.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:55 Heat of formation + Delta-G solvation = -54.965170 kcal Electronic energy + Delta-G solvation = -18704.787791 eV Core-core repulsion = 15601.249705 eV Total energy + Delta-G solvation = -3103.538085 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.80173 -37.97916 -35.86611 -34.27327 -33.13001 -32.18049 -31.00259 -29.31440 -27.60587 -26.81266 -23.95706 -22.04366 -21.87606 -19.60440 -17.95142 -17.49011 -16.33701 -15.83901 -15.59305 -15.53449 -15.15546 -14.88159 -14.39978 -14.34319 -14.19136 -13.83613 -13.35862 -13.06591 -12.86437 -12.72757 -12.54169 -11.99492 -11.95165 -11.72367 -11.60541 -11.15008 -10.99173 -10.86927 -10.56027 -10.31406 -9.41015 -9.16483 -9.00046 -8.89056 -8.72556 -8.30450 -7.87553 -6.15359 -4.22780 0.84311 1.13240 1.60607 2.36010 3.26241 3.29466 3.30753 3.32464 3.56719 4.01461 4.16610 4.36222 4.46875 4.65536 4.80524 4.90232 4.96232 5.00779 5.20527 5.25862 5.33016 5.44555 5.57832 5.59815 5.86112 5.97900 6.36553 6.40046 6.47716 6.87259 7.31939 7.41382 7.52498 7.66618 7.97359 8.60412 8.77507 9.07011 9.43499 10.94893 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.034958 B = 0.003211 C = 0.003034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.762188 B = 8718.076136 C = 9226.121652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.497 4.497 2 S 1.247 4.753 3 O -0.834 6.834 4 C -0.404 4.404 5 C -0.084 4.084 6 C -0.100 4.100 7 C -0.124 4.124 8 C -0.088 4.088 9 C -0.115 4.115 10 C 0.536 3.464 11 O -0.550 6.550 12 N -0.704 5.704 13 C 0.249 3.751 14 C -0.545 4.545 15 H 0.063 0.937 16 C 0.064 3.936 17 N -0.885 5.885 18 Si 0.905 3.095 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.275 1.275 22 C -0.055 4.055 23 H 0.079 0.921 24 H 0.111 0.889 25 H 0.104 0.896 26 H 0.096 0.904 27 H 0.127 0.873 28 H 0.131 0.869 29 H 0.130 0.870 30 H 0.131 0.869 31 H 0.390 0.610 32 H 0.029 0.971 33 H 0.029 0.971 34 H 0.267 0.733 35 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.159 -17.957 -11.898 27.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.654 4.654 2 S 1.445 4.555 3 O -0.829 6.829 4 C -0.539 4.539 5 C -0.085 4.085 6 C -0.120 4.120 7 C -0.142 4.142 8 C -0.107 4.107 9 C -0.118 4.118 10 C 0.322 3.678 11 O -0.430 6.430 12 N -0.352 5.352 13 C 0.128 3.872 14 C -0.583 4.583 15 H 0.081 0.919 16 C -0.140 4.140 17 N -0.522 5.522 18 Si 0.732 3.268 19 H -0.200 1.200 20 H -0.211 1.211 21 H -0.200 1.200 22 C -0.075 4.075 23 H 0.099 0.901 24 H 0.130 0.870 25 H 0.123 0.877 26 H 0.115 0.885 27 H 0.145 0.855 28 H 0.149 0.851 29 H 0.148 0.852 30 H 0.148 0.852 31 H 0.224 0.776 32 H 0.047 0.953 33 H 0.047 0.953 34 H 0.077 0.923 35 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -16.911 -16.661 -12.179 26.682 hybrid contribution 0.327 0.670 1.762 1.913 sum -16.584 -15.991 -10.417 25.284 Atomic orbital electron populations 1.27724 1.22560 1.07838 1.07259 1.70750 0.85943 0.99710 0.99140 1.93221 1.72984 1.36179 1.80552 1.26670 0.97906 1.10759 1.18578 1.18964 0.92709 0.95446 1.01379 1.21139 0.94462 0.97018 0.99337 1.21062 0.94135 0.98930 1.00115 1.21461 1.00306 0.92777 0.96180 1.20282 0.94278 0.95785 1.01442 1.18271 0.83094 0.86300 0.80174 1.90739 1.68479 1.33245 1.50523 1.46410 1.05893 1.23686 1.59214 1.19157 0.90162 0.84598 0.93257 1.21172 0.91114 1.05063 1.40934 0.91906 1.24956 0.99538 0.94709 0.94800 1.69967 1.35333 1.08845 1.38101 0.86455 0.83946 0.77996 0.78394 1.20015 1.21054 1.20048 1.21188 0.93274 0.97783 0.95270 0.90134 0.87027 0.87694 0.88536 0.85504 0.85105 0.85174 0.85157 0.77593 0.95296 0.95341 0.92349 0.85047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.50 -2.77 10.74 101.05 1.09 -1.68 16 2 S 1.25 9.55 13.78 -107.50 -1.48 8.07 16 3 O -0.83 -13.34 18.14 -35.23 -0.64 -13.98 16 4 C -0.40 -3.24 6.05 36.00 0.22 -3.03 16 5 C -0.08 -0.97 5.13 -104.68 -0.54 -1.51 16 6 C -0.10 -0.91 9.69 -39.49 -0.38 -1.29 16 7 C -0.12 -1.26 10.03 -39.64 -0.40 -1.66 16 8 C -0.09 -1.19 9.54 -39.19 -0.37 -1.56 16 9 C -0.11 -2.00 5.87 -104.97 -0.62 -2.62 16 10 C 0.54 12.02 7.77 -12.33 -0.10 11.93 16 11 O -0.55 -14.64 16.35 5.32 0.09 -14.55 16 12 N -0.70 -15.82 5.50 -62.43 -0.34 -16.17 16 13 C 0.25 6.86 5.43 -5.20 -0.03 6.83 16 14 C -0.54 -15.08 9.28 -34.44 -0.32 -15.40 16 15 H 0.06 1.61 7.60 -52.48 -0.40 1.21 16 16 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 17 N -0.89 -26.58 13.29 55.43 0.74 -25.85 16 18 Si 0.91 21.08 29.54 -169.99 -5.02 16.06 16 19 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 20 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 21 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 22 C -0.06 -0.90 9.24 -39.18 -0.36 -1.26 16 23 H 0.08 0.58 8.14 -51.92 -0.42 0.16 16 24 H 0.11 0.27 8.14 -51.92 -0.42 -0.15 16 25 H 0.10 0.56 8.14 -51.92 -0.42 0.14 16 26 H 0.10 0.90 8.08 -51.92 -0.42 0.48 16 27 H 0.13 0.49 8.08 -51.92 -0.42 0.07 16 28 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 29 H 0.13 0.91 8.06 -52.48 -0.42 0.49 16 30 H 0.13 1.58 6.40 -52.49 -0.34 1.24 16 31 H 0.39 7.41 6.36 -40.82 -0.26 7.15 16 32 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 35 H 0.13 2.41 7.65 -52.49 -0.40 2.01 16 LS Contribution 321.46 15.07 4.84 4.84 Total: -1.00 -39.92 321.46 -8.05 -47.97 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -4.33 Total: 3.14 kcal Atomic # 6 Polarization: -7.64 SS G_CDS: -1.91 Total: -9.55 kcal Atomic # 7 Polarization: -42.40 SS G_CDS: 0.39 Total: -42.01 kcal Atomic # 8 Polarization: -27.98 SS G_CDS: -0.55 Total: -28.53 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: 9.55 SS G_CDS: -1.48 Total: 8.07 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -39.92 -8.05 -47.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256175793.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.995 kcal (2) G-P(sol) polarization free energy of solvation -39.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds