Wall clock time and date at job start Tue Mar 31 2020 05:14:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86803 * 120.00037 * 2 1 4 4 H 1.48498 * 109.46807 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.46906 * 120.00270 * 3 2 1 6 6 H 1.48498 * 109.47018 * 240.00008 * 3 2 1 7 7 C 1.38805 * 120.00034 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99910 * 179.97438 * 7 2 1 9 9 S 1.76201 * 119.99766 * 0.02562 * 7 2 1 10 10 C 1.81001 * 99.99894 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.46896 * 180.02562 * 10 9 7 12 12 O 1.21274 * 120.00232 * 359.97438 * 11 10 9 13 13 N 1.34781 * 119.99423 * 180.02562 * 11 10 9 14 14 C 1.46503 * 119.99634 * 179.97438 * 13 11 10 15 15 H 1.09002 * 109.42462 * 35.00084 * 14 13 11 16 16 C 1.53030 * 109.42541 * 154.88417 * 14 13 11 17 17 C 1.53382 * 109.72312 * 191.81129 * 16 14 13 18 18 C 1.50876 * 108.19682 * 309.47323 * 17 16 14 19 19 C 1.34571 * 128.32742 * 196.56918 * 18 17 16 20 20 N 1.35193 * 107.61888 * 179.85657 * 19 18 17 21 21 H 0.97002 * 126.00495 * 179.97438 * 20 19 18 22 22 N 1.40308 * 107.99532 * 0.03447 * 20 19 18 23 23 C 1.30126 * 108.12464 * 0.04550 * 22 20 19 24 24 C 1.50926 * 128.30853 * 179.77701 * 23 22 20 25 25 H 0.97001 * 119.99662 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.46895 * 300.00170 * 10 9 7 27 27 H 1.09003 * 109.47006 * 60.00004 * 10 9 7 28 28 H 0.96994 * 120.00530 * 359.97438 * 13 11 10 29 29 H 1.08996 * 109.42835 * 311.89909 * 16 14 13 30 30 H 1.09006 * 109.42403 * 71.78632 * 16 14 13 31 31 H 1.09005 * 109.71301 * 69.14991 * 17 16 14 32 32 H 1.08995 * 109.71924 * 189.74676 * 17 16 14 33 33 H 1.08002 * 126.19359 * 359.83759 * 19 18 17 34 34 H 1.08992 * 109.75983 * 77.14233 * 24 23 22 35 35 H 1.09001 * 109.65968 * 316.50609 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6178 0.0000 4 1 1.2853 2.7464 -0.0006 5 1 3.1041 1.6963 1.2125 6 1 3.1041 1.6964 -1.2125 7 6 2.0104 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 16 1.1293 -2.7280 0.0005 10 6 2.5158 -3.8915 0.0005 11 6 1.9873 -5.3027 -0.0001 12 8 0.7911 -5.5023 0.0000 13 7 2.8441 -6.3431 0.0003 14 6 2.3303 -7.7151 0.0003 15 1 1.4148 -7.7594 -0.5897 16 6 3.3758 -8.6501 -0.6118 17 6 2.7460 -10.0213 -0.8872 18 6 2.0485 -10.4803 0.3694 19 6 1.6324 -11.7199 0.6876 20 7 1.0643 -11.6589 1.9129 21 1 0.6745 -12.4027 2.3984 22 7 1.1363 -10.3304 2.3584 23 6 1.7232 -9.6252 1.4356 24 6 2.0302 -8.1475 1.4408 25 1 -0.4850 0.8401 0.0004 26 1 3.1244 -3.7314 -0.8895 27 1 3.1245 -3.7314 0.8906 28 1 3.8008 -6.1836 0.0006 29 1 3.7403 -8.2240 -1.5465 30 1 4.2082 -8.7670 0.0822 31 1 2.0237 -9.9377 -1.6993 32 1 3.5235 -10.7352 -1.1588 33 1 1.7336 -12.6035 0.0749 34 1 2.8979 -7.9536 2.0713 35 1 1.1697 -7.5955 1.8187 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319269103.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:57 Heat of formation + Delta-G solvation = 24.953291 kcal Electronic energy + Delta-G solvation = -18832.117472 eV Core-core repulsion = 15764.337662 eV Total energy + Delta-G solvation = -3067.779810 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.63608 -39.33714 -36.74676 -33.42399 -32.40029 -32.29647 -30.30609 -28.81011 -28.21584 -25.46812 -24.29101 -21.84849 -21.19482 -20.26777 -19.12209 -17.88588 -17.64672 -16.31513 -16.14472 -15.36040 -14.95792 -14.78074 -14.42347 -14.20244 -13.85346 -13.73399 -13.27647 -13.02400 -12.99681 -12.53313 -12.27012 -11.87362 -11.68186 -11.42221 -11.02956 -11.01786 -10.97332 -10.73954 -10.49703 -9.79428 -9.54156 -9.34882 -9.03773 -8.89240 -8.62202 -8.20407 -6.46710 -6.18805 -3.89155 1.71565 2.56238 2.64153 3.07190 3.13587 3.25549 3.29613 3.33372 3.73131 4.23236 4.32315 4.54057 4.67196 4.89224 4.99352 5.11824 5.16176 5.20597 5.31001 5.41492 5.44881 5.58671 5.66256 5.76794 5.88961 5.91517 5.94413 6.01665 6.16527 6.18332 6.47911 6.69401 7.09101 7.51456 7.61948 7.76239 8.37742 8.66106 9.26315 10.88551 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.047697 B = 0.003011 C = 0.002924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.897932 B = 9297.155297 C = 9574.930618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.283 1.283 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.060 6.060 10 C -0.154 4.154 11 C 0.532 3.468 12 O -0.515 6.515 13 N -0.735 5.735 14 C 0.153 3.847 15 H 0.093 0.907 16 C -0.125 4.125 17 C -0.035 4.035 18 C -0.239 4.239 19 C 0.059 3.941 20 N -0.487 5.487 21 H 0.438 0.562 22 N -0.287 5.287 23 C 0.093 3.907 24 C -0.053 4.053 25 H 0.269 0.731 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.399 0.601 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.175 0.825 34 H 0.086 0.914 35 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.804 -23.437 -0.657 25.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.208 1.208 5 H -0.199 1.199 6 H -0.200 1.200 7 C -0.684 4.684 8 H 0.090 0.910 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.319 3.681 12 O -0.389 6.389 13 N -0.388 5.388 14 C 0.047 3.953 15 H 0.111 0.889 16 C -0.163 4.163 17 C -0.074 4.074 18 C -0.251 4.251 19 C -0.086 4.086 20 N -0.195 5.195 21 H 0.282 0.718 22 N -0.109 5.109 23 C -0.076 4.076 24 C -0.093 4.093 25 H 0.079 0.921 26 H 0.108 0.892 27 H 0.108 0.892 28 H 0.233 0.767 29 H 0.095 0.905 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.192 0.808 34 H 0.104 0.896 35 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 6.082 -23.633 0.477 24.408 hybrid contribution 2.544 0.766 -0.444 2.693 sum 8.625 -22.867 0.033 24.440 Atomic orbital electron populations 1.70012 1.05949 1.27535 1.46819 1.24993 0.95022 0.99009 0.94568 0.86228 0.79231 0.81277 0.78782 1.20842 1.19948 1.19955 1.22833 0.94878 0.91710 1.58990 0.90978 1.85409 1.04950 0.96279 1.96717 1.23539 1.06552 0.95406 1.04949 1.20336 0.86590 0.86299 0.74924 1.90708 1.15354 1.85529 1.47286 1.46057 1.09931 1.05062 1.77785 1.20810 0.98422 0.80955 0.95106 0.88943 1.21837 0.98039 0.94841 1.01558 1.19916 0.98410 0.95622 0.93464 1.20147 1.12153 0.92628 1.00159 1.22039 0.98457 0.99463 0.88682 1.46348 1.49438 1.08839 1.14905 0.71835 1.77071 1.23020 0.88028 1.22785 1.22265 0.96661 0.96690 0.91986 1.20553 1.03267 0.87258 0.98239 0.92148 0.89202 0.89180 0.76720 0.90497 0.91156 0.90850 0.90799 0.80763 0.89578 0.89044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.31 13.22 55.49 0.73 -25.57 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.46 29.55 -169.99 -5.02 16.43 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 6 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 7 C -0.54 -15.29 9.50 30.94 0.29 -14.99 16 8 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 9 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 10 C -0.15 -3.06 6.16 36.01 0.22 -2.84 16 11 C 0.53 9.77 7.81 -10.98 -0.09 9.68 16 12 O -0.52 -11.63 15.52 5.56 0.09 -11.54 16 13 N -0.73 -9.48 5.08 -53.60 -0.27 -9.75 16 14 C 0.15 1.82 2.40 -67.72 -0.16 1.66 16 15 H 0.09 1.32 7.53 -51.93 -0.39 0.93 16 16 C -0.12 -1.04 5.33 -26.52 -0.14 -1.18 16 17 C -0.04 -0.28 6.28 -27.60 -0.17 -0.45 16 18 C -0.24 -2.39 5.89 -104.98 -0.62 -3.01 16 19 C 0.06 0.47 11.95 -17.37 -0.21 0.27 16 20 N -0.49 -4.45 7.37 30.35 0.22 -4.23 16 21 H 0.44 2.48 8.96 -182.44 -1.64 0.85 16 22 N -0.29 -3.80 12.68 33.75 0.43 -3.38 16 23 C 0.09 1.18 7.10 -82.35 -0.58 0.59 16 24 C -0.05 -0.67 5.88 -27.58 -0.16 -0.83 16 25 H 0.27 7.58 8.31 -40.82 -0.34 7.25 16 26 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 27 H 0.09 1.65 8.14 -51.91 -0.42 1.23 16 28 H 0.40 3.87 8.60 -40.82 -0.35 3.52 16 29 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.53 8.10 -51.93 -0.42 0.11 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.18 0.68 8.06 -52.49 -0.42 0.25 16 34 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 35 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 313.47 15.07 4.72 4.72 Total: -1.00 -36.56 313.47 -8.75 -45.31 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -5.72 Total: 0.95 kcal Atomic # 6 Polarization: -7.39 SS G_CDS: -1.72 Total: -9.11 kcal Atomic # 7 Polarization: -44.04 SS G_CDS: 1.11 Total: -42.93 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: 0.09 Total: -11.54 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -36.56 -8.75 -45.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319269103.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.264 kcal (2) G-P(sol) polarization free energy of solvation -36.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds