Wall clock time and date at job start Tue Mar 31 2020 05:14:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86803 * 120.00037 * 2 1 4 4 H 1.48498 * 109.46807 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.46906 * 120.00270 * 3 2 1 6 6 H 1.48498 * 109.47018 * 240.00008 * 3 2 1 7 7 C 1.38805 * 120.00034 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99910 * 179.97438 * 7 2 1 9 9 S 1.76201 * 119.99766 * 0.02562 * 7 2 1 10 10 C 1.81001 * 99.99894 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.46896 * 180.02562 * 10 9 7 12 12 O 1.21274 * 120.00232 * 359.97438 * 11 10 9 13 13 N 1.34781 * 119.99423 * 180.02562 * 11 10 9 14 14 C 1.46503 * 119.99634 * 179.97438 * 13 11 10 15 15 H 1.09002 * 109.42462 * 35.00084 * 14 13 11 16 16 C 1.53030 * 109.42541 * 154.88417 * 14 13 11 17 17 C 1.53382 * 109.72312 * 191.81129 * 16 14 13 18 18 C 1.50876 * 108.19682 * 309.47323 * 17 16 14 19 19 C 1.34571 * 128.32742 * 196.56918 * 18 17 16 20 20 N 1.35193 * 107.61888 * 179.85657 * 19 18 17 21 21 H 0.97002 * 126.00495 * 179.97438 * 20 19 18 22 22 N 1.40308 * 107.99532 * 0.03447 * 20 19 18 23 23 C 1.30126 * 108.12464 * 0.04550 * 22 20 19 24 24 C 1.50926 * 128.30853 * 179.77701 * 23 22 20 25 25 H 0.97001 * 119.99662 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.46895 * 300.00170 * 10 9 7 27 27 H 1.09003 * 109.47006 * 60.00004 * 10 9 7 28 28 H 0.96994 * 120.00530 * 359.97438 * 13 11 10 29 29 H 1.08996 * 109.42835 * 311.89909 * 16 14 13 30 30 H 1.09006 * 109.42403 * 71.78632 * 16 14 13 31 31 H 1.09005 * 109.71301 * 69.14991 * 17 16 14 32 32 H 1.08995 * 109.71924 * 189.74676 * 17 16 14 33 33 H 1.08002 * 126.19359 * 359.83759 * 19 18 17 34 34 H 1.08992 * 109.75983 * 77.14233 * 24 23 22 35 35 H 1.09001 * 109.65968 * 316.50609 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6178 0.0000 4 1 1.2853 2.7464 -0.0006 5 1 3.1041 1.6963 1.2125 6 1 3.1041 1.6964 -1.2125 7 6 2.0104 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 16 1.1293 -2.7280 0.0005 10 6 2.5158 -3.8915 0.0005 11 6 1.9873 -5.3027 -0.0001 12 8 0.7911 -5.5023 0.0000 13 7 2.8441 -6.3431 0.0003 14 6 2.3303 -7.7151 0.0003 15 1 1.4148 -7.7594 -0.5897 16 6 3.3758 -8.6501 -0.6118 17 6 2.7460 -10.0213 -0.8872 18 6 2.0485 -10.4803 0.3694 19 6 1.6324 -11.7199 0.6876 20 7 1.0643 -11.6589 1.9129 21 1 0.6745 -12.4027 2.3984 22 7 1.1363 -10.3304 2.3584 23 6 1.7232 -9.6252 1.4356 24 6 2.0302 -8.1475 1.4408 25 1 -0.4850 0.8401 0.0004 26 1 3.1244 -3.7314 -0.8895 27 1 3.1245 -3.7314 0.8906 28 1 3.8008 -6.1836 0.0006 29 1 3.7403 -8.2240 -1.5465 30 1 4.2082 -8.7670 0.0822 31 1 2.0237 -9.9377 -1.6993 32 1 3.5235 -10.7352 -1.1588 33 1 1.7336 -12.6035 0.0749 34 1 2.8979 -7.9536 2.0713 35 1 1.1697 -7.5955 1.8187 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319269103.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:57 Heat of formation + Delta-G solvation = -2.580605 kcal Electronic energy + Delta-G solvation = -18833.311432 eV Core-core repulsion = 15764.337662 eV Total energy + Delta-G solvation = -3068.973769 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.41174 -40.69391 -37.80718 -34.59609 -34.52430 -33.10224 -31.52307 -29.75595 -29.33769 -27.64018 -25.15049 -22.73988 -21.94045 -21.65633 -20.10262 -19.65721 -18.48214 -17.72076 -17.36273 -16.85980 -16.43166 -16.12844 -15.92426 -15.25260 -14.99757 -14.70987 -14.50030 -14.35841 -14.07864 -13.76792 -13.48825 -13.14871 -12.93273 -12.83988 -12.66138 -12.47903 -12.20194 -11.82419 -11.68185 -11.33618 -11.10987 -10.89218 -10.39869 -10.24744 -10.12222 -9.32501 -8.64534 -8.32589 -6.10615 0.98791 1.28803 1.45457 1.48480 1.58077 1.63920 1.77293 1.98916 2.28844 2.35236 3.01379 3.33777 3.52823 3.77238 3.92503 4.03889 4.10819 4.29806 4.36286 4.39048 4.49399 4.55414 4.65712 4.70285 4.89705 4.99061 5.02210 5.22304 5.26930 5.38673 5.43553 5.51737 5.71999 6.21620 6.51829 6.57661 6.73269 7.08477 7.30572 8.76426 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.047697 B = 0.003011 C = 0.002924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.897932 B = 9297.155297 C = 9574.930618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.012 3.988 3 Si 0.999 3.001 4 H -0.280 1.280 5 H -0.262 1.262 6 H -0.261 1.261 7 C -0.546 4.546 8 H 0.084 0.916 9 S -0.156 6.156 10 C -0.129 4.129 11 C 0.534 3.466 12 O -0.566 6.566 13 N -0.706 5.706 14 C 0.156 3.844 15 H 0.064 0.936 16 C -0.116 4.116 17 C -0.031 4.031 18 C -0.259 4.259 19 C 0.078 3.922 20 N -0.479 5.479 21 H 0.451 0.549 22 N -0.337 5.337 23 C 0.071 3.929 24 C -0.049 4.049 25 H 0.271 0.729 26 H 0.113 0.887 27 H 0.110 0.890 28 H 0.419 0.581 29 H 0.093 0.907 30 H 0.085 0.915 31 H 0.073 0.927 32 H 0.105 0.895 33 H 0.223 0.777 34 H 0.096 0.904 35 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.902 -24.984 -1.613 27.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.193 4.193 3 Si 0.821 3.179 4 H -0.205 1.205 5 H -0.187 1.187 6 H -0.185 1.185 7 C -0.693 4.693 8 H 0.102 0.898 9 S 0.072 5.928 10 C -0.280 4.280 11 C 0.320 3.680 12 O -0.444 6.444 13 N -0.360 5.360 14 C 0.051 3.949 15 H 0.083 0.917 16 C -0.153 4.153 17 C -0.070 4.070 18 C -0.271 4.271 19 C -0.068 4.068 20 N -0.189 5.189 21 H 0.298 0.702 22 N -0.161 5.161 23 C -0.097 4.097 24 C -0.089 4.089 25 H 0.080 0.920 26 H 0.131 0.869 27 H 0.129 0.871 28 H 0.257 0.743 29 H 0.112 0.888 30 H 0.104 0.896 31 H 0.091 0.909 32 H 0.123 0.877 33 H 0.239 0.761 34 H 0.114 0.886 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 9.237 -25.220 -0.471 26.863 hybrid contribution 1.583 1.050 -0.115 1.903 sum 10.820 -24.170 -0.586 26.488 Atomic orbital electron populations 1.70189 1.08029 1.28631 1.48066 1.26152 0.95961 1.03390 0.93777 0.84995 0.77776 0.75631 0.79535 1.20518 1.18667 1.18522 1.23184 0.95387 0.91969 1.58810 0.89772 1.85624 1.10810 0.99352 1.97059 1.23381 1.03442 0.94205 1.06981 1.20120 0.86281 0.86771 0.74815 1.90700 1.17590 1.86068 1.50020 1.45779 1.10364 1.04483 1.75364 1.20889 0.98873 0.80645 0.94534 0.91741 1.21823 0.96982 0.94263 1.02276 1.19983 0.99048 0.95621 0.92315 1.20499 1.13250 0.92921 1.00404 1.22771 0.95847 1.00334 0.87881 1.46400 1.49014 1.07957 1.15556 0.70236 1.76966 1.24627 0.90104 1.24362 1.22309 0.97560 0.96554 0.93326 1.20415 1.01977 0.87830 0.98685 0.92045 0.86863 0.87136 0.74286 0.88823 0.89593 0.90892 0.87707 0.76088 0.88588 0.93036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.73 13.22 21.65 0.29 -56.44 16 2 C 0.01 0.68 5.49 84.86 0.47 1.14 16 3 Si 1.00 43.79 29.55 68.60 2.03 45.82 16 4 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 5 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 6 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 7 C -0.55 -31.31 9.50 67.96 0.65 -30.67 16 8 H 0.08 4.44 7.80 -2.92 -0.02 4.42 16 9 S -0.16 -8.73 20.57 -56.49 -1.16 -9.90 16 10 C -0.13 -5.07 6.16 71.24 0.44 -4.64 16 11 C 0.53 19.75 7.81 87.66 0.68 20.43 16 12 O -0.57 -26.80 15.52 -3.01 -0.05 -26.84 16 13 N -0.71 -17.42 5.08 -441.89 -2.24 -19.66 16 14 C 0.16 3.64 2.40 45.12 0.11 3.74 16 15 H 0.06 1.91 7.53 -2.39 -0.02 1.89 16 16 C -0.12 -1.60 5.33 30.73 0.16 -1.43 16 17 C -0.03 -0.38 6.28 30.03 0.19 -0.20 16 18 C -0.26 -4.64 5.89 -20.10 -0.12 -4.75 16 19 C 0.08 1.00 11.95 83.33 1.00 2.00 16 20 N -0.48 -8.03 7.37 -57.89 -0.43 -8.46 16 21 H 0.45 4.40 8.96 -213.18 -1.91 2.48 16 22 N -0.34 -9.03 12.68 -47.15 -0.60 -9.62 16 23 C 0.07 1.78 7.10 43.43 0.31 2.09 16 24 C -0.05 -1.27 5.88 30.04 0.18 -1.10 16 25 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 26 H 0.11 3.93 8.14 -2.39 -0.02 3.92 16 27 H 0.11 3.90 8.14 -2.39 -0.02 3.88 16 28 H 0.42 6.99 8.60 -92.71 -0.80 6.19 16 29 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.09 0.97 8.10 -2.38 -0.02 0.95 16 31 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 32 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.22 0.58 8.06 -2.91 -0.02 0.55 16 34 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 35 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -84.68 313.47 0.32 -84.36 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: -1.58 Total: 14.12 kcal Atomic # 6 Polarization: -17.44 SS G_CDS: 4.06 Total: -13.38 kcal Atomic # 7 Polarization: -91.20 SS G_CDS: -2.98 Total: -94.18 kcal Atomic # 8 Polarization: -26.80 SS G_CDS: -0.05 Total: -26.84 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Atomic # 16 Polarization: -8.73 SS G_CDS: -1.16 Total: -9.90 kcal Total: -84.68 0.32 -84.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319269103.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.781 kcal (2) G-P(sol) polarization free energy of solvation -84.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds