Wall clock time and date at job start Tue Mar 31 2020 06:23:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30676 * 1 3 3 Si 1.86797 * 120.00366 * 2 1 4 4 H 1.48505 * 109.46983 * 239.99929 * 3 2 1 5 5 H 1.48502 * 109.47036 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47333 * 119.99974 * 3 2 1 7 7 C 1.40060 * 119.99654 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99978 * 180.02562 * 7 2 1 9 9 C 1.46372 * 119.99840 * 0.02562 * 7 2 1 10 10 O 1.21691 * 120.00312 * 354.96951 * 9 7 2 11 11 N 1.34777 * 119.99827 * 174.97392 * 9 7 2 12 12 C 1.46931 * 120.62801 * 5.14362 * 11 9 7 13 13 C 1.53194 * 108.77183 * 126.41360 * 12 11 9 14 14 C 1.53035 * 109.31633 * 54.63586 * 13 12 11 15 15 H 1.09000 * 109.46166 * 58.65093 * 14 13 12 16 16 C 1.53003 * 109.46223 * 178.61231 * 14 13 12 17 17 F 1.39899 * 109.47073 * 186.33086 * 16 14 13 18 18 F 1.39897 * 109.46775 * 306.33269 * 16 14 13 19 19 F 1.39901 * 109.46735 * 66.33422 * 16 14 13 20 20 C 1.53040 * 109.53677 * 298.63173 * 14 13 12 21 21 H 1.09000 * 109.49798 * 301.41798 * 20 14 13 22 22 C 1.52999 * 109.50271 * 181.31865 * 20 14 13 23 23 O 1.42894 * 109.47389 * 177.21354 * 22 20 14 24 24 C 1.46928 * 120.63122 * 185.16264 * 11 9 7 25 25 H 0.96999 * 119.99514 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.58304 * 246.19911 * 12 11 9 27 27 H 1.08994 * 109.59013 * 6.47998 * 12 11 9 28 28 H 1.09003 * 109.49563 * 174.58525 * 13 12 11 29 29 H 1.09001 * 109.49672 * 294.67775 * 13 12 11 30 30 H 1.09008 * 109.46807 * 297.20995 * 22 20 14 31 31 H 1.08995 * 109.47197 * 57.20616 * 22 20 14 32 32 H 0.96704 * 113.99776 * 180.02562 * 23 22 20 33 33 H 1.09000 * 109.58123 * 113.80089 * 24 11 9 34 34 H 1.08997 * 109.58711 * 353.37457 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6176 0.0000 4 1 3.0946 1.6962 -1.2125 5 1 1.2759 2.7464 -0.0006 6 1 3.0946 1.6963 1.2125 7 6 2.0070 -1.2130 0.0005 8 1 3.0869 -1.2131 0.0010 9 6 1.2750 -2.4806 0.0005 10 8 0.0616 -2.4825 0.0925 11 7 1.9450 -3.6456 -0.1012 12 6 3.4141 -3.6668 -0.0997 13 6 3.8920 -4.6346 0.9875 14 6 3.2439 -6.0033 0.7673 15 1 3.5088 -6.3756 -0.2223 16 6 3.7457 -6.9820 1.8309 17 9 3.2680 -8.2657 1.5460 18 9 5.1446 -6.9942 1.8304 19 9 3.2832 -6.5809 3.0889 20 6 1.7228 -5.8721 0.8723 21 1 1.4585 -5.4764 1.8529 22 6 1.0774 -7.2466 0.6847 23 8 -0.3379 -7.1345 0.8472 24 6 1.2201 -4.9184 -0.2162 25 1 -0.4849 0.8401 0.0004 26 1 3.7757 -4.0019 -1.0718 27 1 3.7939 -2.6661 0.1063 28 1 4.9764 -4.7330 0.9358 29 1 3.6074 -4.2506 1.9671 30 1 1.2999 -7.6190 -0.3154 31 1 1.4747 -7.9389 1.4269 32 1 -0.8132 -7.9700 0.7418 33 1 1.4028 -5.3555 -1.1978 34 1 0.1523 -4.7440 -0.0845 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346033656.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:15 Heat of formation + Delta-G solvation = -240.555982 kcal Electronic energy + Delta-G solvation = -23543.210784 eV Core-core repulsion = 19447.015265 eV Total energy + Delta-G solvation = -4096.195518 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.103 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -50.20287 -47.72591 -47.55734 -39.09750 -36.85356 -35.73332 -32.75455 -32.43269 -31.13901 -27.21947 -26.82368 -24.87208 -23.10478 -21.86108 -20.54694 -19.29188 -18.37822 -18.32788 -17.59865 -17.04317 -16.50022 -15.62572 -15.23117 -14.68991 -14.57368 -14.25146 -14.21361 -14.09095 -13.88885 -13.77997 -13.63556 -13.40291 -13.27265 -12.60164 -12.54263 -12.21898 -11.75703 -11.47684 -11.23027 -11.10527 -10.87531 -10.83421 -10.72097 -10.32328 -10.20720 -9.95508 -9.76017 -8.87244 -7.61115 -7.31985 -6.21961 -4.68023 2.74877 3.13796 3.19104 3.20515 3.77078 3.91678 4.00973 4.04973 4.32460 4.43829 4.55368 4.83095 4.99210 5.10553 5.28616 5.37436 5.51839 5.56803 5.72736 5.75416 5.81753 5.90226 6.08943 6.33101 6.37620 6.61591 6.63789 7.42377 7.54830 7.73924 8.08012 8.29186 8.99106 9.38174 10.54896 10.73270 Molecular weight = 281.10amu Principal moments of inertia in cm(-1) A = 0.024487 B = 0.005424 C = 0.004706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.167388 B = 5160.602193 C = 5948.414206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.088 3.912 3 Si 0.907 3.093 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.546 4.546 8 H 0.073 0.927 9 C 0.559 3.441 10 O -0.572 6.572 11 N -0.645 5.645 12 C 0.126 3.874 13 C -0.134 4.134 14 C -0.121 4.121 15 H 0.113 0.887 16 C 0.451 3.549 17 F -0.184 7.184 18 F -0.185 7.185 19 F -0.179 7.179 20 C -0.101 4.101 21 H 0.093 0.907 22 C 0.063 3.937 23 O -0.563 6.563 24 C 0.136 3.864 25 H 0.270 0.730 26 H 0.047 0.953 27 H 0.102 0.898 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.046 0.954 31 H 0.062 0.938 32 H 0.375 0.625 33 H 0.043 0.957 34 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.491 -13.601 1.007 16.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.132 4.132 3 Si 0.731 3.269 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.192 1.192 7 C -0.582 4.582 8 H 0.091 0.909 9 C 0.365 3.635 10 O -0.454 6.454 11 N -0.383 5.383 12 C 0.001 3.999 13 C -0.172 4.172 14 C -0.140 4.140 15 H 0.131 0.869 16 C 0.397 3.603 17 F -0.166 7.166 18 F -0.166 7.166 19 F -0.161 7.161 20 C -0.120 4.120 21 H 0.111 0.889 22 C -0.015 4.015 23 O -0.368 6.368 24 C 0.012 3.988 25 H 0.080 0.920 26 H 0.065 0.935 27 H 0.120 0.880 28 H 0.098 0.902 29 H 0.098 0.902 30 H 0.065 0.935 31 H 0.080 0.920 32 H 0.222 0.778 33 H 0.061 0.939 34 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 7.785 -12.848 1.175 15.069 hybrid contribution 0.626 -0.182 0.112 0.661 sum 8.410 -13.031 1.286 15.562 Atomic orbital electron populations 1.70004 1.07081 1.27491 1.34932 1.25731 0.94616 1.00305 0.92589 0.86449 0.79859 0.81110 0.79450 1.19252 1.20533 1.19231 1.20933 0.93496 0.89222 1.54566 0.90917 1.18264 0.86969 0.82112 0.76151 1.90612 1.14338 1.85929 1.54565 1.48299 1.04448 1.05957 1.79590 1.21380 0.82931 1.00110 0.95473 1.22095 0.99937 0.92451 1.02735 1.22500 0.98160 0.95976 0.97386 0.86915 1.20871 0.75224 0.80844 0.83388 1.93057 1.87291 1.42739 1.93505 1.93157 1.30180 1.96555 1.96717 1.93186 1.88506 1.90364 1.43997 1.21601 0.90323 0.96140 1.03969 0.88889 1.22712 0.81907 0.96689 1.00233 1.86573 1.18529 1.36548 1.95111 1.21048 0.99654 0.84030 0.94074 0.91962 0.93475 0.87999 0.90181 0.90216 0.93538 0.92029 0.77838 0.93873 0.88229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.80 11.84 55.55 0.66 -22.14 16 2 C 0.09 2.40 5.50 -17.36 -0.10 2.31 16 3 Si 0.91 19.73 29.56 -169.99 -5.02 14.70 16 4 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 5 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 6 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 7 C -0.55 -14.94 8.86 -35.63 -0.32 -15.25 16 8 H 0.07 1.78 5.68 -52.49 -0.30 1.48 16 9 C 0.56 15.69 7.62 -12.99 -0.10 15.59 16 10 O -0.57 -18.52 14.46 5.20 0.08 -18.45 16 11 N -0.64 -14.21 2.97 -174.43 -0.52 -14.73 16 12 C 0.13 2.16 6.32 -3.71 -0.02 2.14 16 13 C -0.13 -1.89 5.11 -26.61 -0.14 -2.02 16 14 C -0.12 -1.59 1.79 -90.58 -0.16 -1.75 16 15 H 0.11 1.27 8.14 -51.93 -0.42 0.85 16 16 C 0.45 5.73 2.55 37.16 0.09 5.82 16 17 F -0.18 -2.22 13.99 2.25 0.03 -2.19 16 18 F -0.18 -2.29 16.53 2.25 0.04 -2.26 16 19 F -0.18 -2.56 16.34 2.25 0.04 -2.52 16 20 C -0.10 -1.59 1.93 -90.50 -0.17 -1.77 16 21 H 0.09 1.71 7.71 -51.93 -0.40 1.31 16 22 C 0.06 0.83 5.76 37.16 0.21 1.05 16 23 O -0.56 -8.11 13.22 -35.23 -0.47 -8.58 16 24 C 0.14 2.65 5.53 -3.71 -0.02 2.63 16 25 H 0.27 7.30 8.29 -40.82 -0.34 6.96 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 27 H 0.10 1.84 5.37 -51.93 -0.28 1.56 16 28 H 0.08 0.93 7.61 -51.93 -0.40 0.53 16 29 H 0.08 1.25 8.01 -51.93 -0.42 0.83 16 30 H 0.05 0.54 8.14 -51.92 -0.42 0.11 16 31 H 0.06 0.76 5.25 -51.93 -0.27 0.48 16 32 H 0.38 3.37 9.12 45.56 0.42 3.78 16 33 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.10 2.32 6.79 -51.93 -0.35 1.96 16 LS Contribution 287.59 15.07 4.33 4.33 Total: -1.00 -34.31 287.59 -4.38 -38.69 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -2.82 Total: 4.39 kcal Atomic # 6 Polarization: 9.45 SS G_CDS: -0.72 Total: 8.74 kcal Atomic # 7 Polarization: -37.00 SS G_CDS: 0.14 Total: -36.86 kcal Atomic # 8 Polarization: -26.63 SS G_CDS: -0.39 Total: -27.02 kcal Atomic # 9 Polarization: -7.07 SS G_CDS: 0.11 Total: -6.97 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.02 Total: 14.70 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -34.31 -4.38 -38.69 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346033656.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -201.867 kcal (2) G-P(sol) polarization free energy of solvation -34.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -236.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -240.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds