Wall clock time and date at job start Tue Mar 31 2020 05:10:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.76210 * 102.99974 * 2 1 4 4 C 1.38990 * 120.07660 * 359.97438 * 3 2 1 5 5 C 1.38062 * 119.91771 * 180.02562 * 4 3 2 6 6 C 1.38329 * 120.07818 * 0.02562 * 5 4 3 7 7 C 1.38280 * 120.16269 * 359.97438 * 6 5 4 8 8 C 1.38108 * 120.07816 * 359.97438 * 7 6 5 9 9 C 1.50696 * 120.03922 * 180.02562 * 8 7 6 10 10 N 1.46497 * 109.47395 * 260.00097 * 9 8 7 11 11 C 1.36944 * 119.99964 * 270.00022 * 10 9 8 12 12 H 1.08002 * 119.99471 * 325.66115 * 11 10 9 13 13 C 1.38807 * 120.00027 * 145.65925 * 11 10 9 14 14 N 1.31620 * 120.00026 * 338.08507 * 13 11 10 15 15 Si 1.86799 * 120.00046 * 158.09096 * 13 11 10 16 16 H 1.48502 * 109.46972 * 59.99748 * 15 13 11 17 17 H 1.48504 * 109.47191 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.46819 * 300.00058 * 15 13 11 19 19 C 1.46497 * 120.00211 * 89.99950 * 10 9 8 20 20 C 1.50704 * 109.46958 * 86.06639 * 19 10 9 21 21 O 1.20819 * 120.00090 * 359.97438 * 20 19 10 22 22 O 1.34232 * 119.99576 * 180.02562 * 20 19 10 23 23 H 1.08998 * 109.47315 * 59.99669 * 1 2 3 24 24 H 1.08995 * 109.47264 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46697 * 300.00055 * 1 2 3 26 26 H 1.07999 * 120.04379 * 0.04218 * 4 3 2 27 27 H 1.07997 * 119.96374 * 180.29792 * 5 4 3 28 28 H 1.07999 * 119.91768 * 179.97438 * 6 5 4 29 29 H 1.07996 * 119.96242 * 179.97438 * 7 6 5 30 30 H 1.09002 * 109.47496 * 20.00085 * 9 8 7 31 31 H 1.09006 * 109.47251 * 139.99563 * 9 8 7 32 32 H 0.96999 * 120.00319 * 179.97438 * 14 13 11 33 33 H 1.09005 * 109.47111 * 206.06303 * 19 10 9 34 34 H 1.08999 * 109.47233 * 326.06688 * 19 10 9 35 35 H 0.96702 * 116.99632 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 1.1951 2.6662 -0.0005 5 6 1.5094 4.0106 -0.0011 6 6 2.8328 4.4131 -0.0016 7 6 3.8455 3.4715 -0.0011 8 6 3.5386 2.1250 0.0005 9 6 4.6429 1.0996 0.0017 10 7 4.8375 0.5899 -1.3579 11 6 4.1338 -0.5039 -1.7864 12 1 3.8940 -1.2970 -1.0936 13 6 3.7287 -0.5933 -3.1110 14 7 3.6214 0.4964 -3.8414 15 14 3.3356 -2.2601 -3.8571 16 1 2.2262 -2.8925 -3.0991 17 1 2.9291 -2.0845 -5.2746 18 1 4.5385 -3.1283 -3.7904 19 6 5.7850 1.2504 -2.2591 20 6 7.1665 0.6927 -2.0320 21 8 7.3417 -0.1678 -1.2021 22 8 8.2025 1.1527 -2.7510 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 0.1617 2.3526 -0.0003 27 1 0.7212 4.7488 0.0034 28 1 3.0758 5.4655 -0.0024 29 1 4.8776 3.7894 -0.0019 30 1 5.5663 1.5604 0.3526 31 1 4.3735 0.2762 0.6633 32 1 3.3387 0.4340 -4.7671 33 1 5.4872 1.0733 -3.2927 34 1 5.7887 2.3221 -2.0605 35 1 9.0694 0.7642 -2.5700 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599824075.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:28 Heat of formation + Delta-G solvation = -39.378855 kcal Electronic energy + Delta-G solvation = -20301.029402 eV Core-core repulsion = 17198.167190 eV Total energy + Delta-G solvation = -3102.862212 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.20324 -38.52919 -35.79314 -34.84905 -32.07624 -30.68381 -30.33614 -28.31124 -27.42514 -25.60146 -22.71205 -22.19137 -20.90272 -19.92356 -17.18703 -16.95591 -16.83545 -15.67280 -15.13576 -15.05920 -14.71556 -14.42249 -13.97620 -13.78350 -13.52723 -13.25689 -13.16338 -12.76734 -12.10156 -12.06048 -11.94427 -11.46063 -11.21681 -10.93775 -10.84748 -10.75605 -10.51398 -10.38837 -10.16306 -10.09253 -9.57390 -9.28615 -9.04891 -8.52275 -8.22997 -6.79795 -6.47762 -5.90556 -3.36532 1.87310 1.96150 2.31865 3.21192 3.28765 3.38311 3.42408 3.47266 3.97737 4.32080 4.51298 5.32415 5.35465 5.41286 5.47597 5.49107 5.52902 5.60586 5.86390 6.01557 6.10689 6.16355 6.33323 6.41369 6.47650 6.56602 6.70445 6.87752 7.00469 7.18253 7.20322 7.38213 7.52468 7.81595 8.33662 8.83372 9.08824 9.64544 10.17783 11.13123 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.013681 B = 0.009024 C = 0.006383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2046.158629 B = 3102.106348 C = 4385.540672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 S -0.044 6.044 3 C -0.055 4.055 4 C -0.144 4.144 5 C -0.116 4.116 6 C -0.136 4.136 7 C -0.102 4.102 8 C -0.066 4.066 9 C 0.176 3.824 10 N -0.545 5.545 11 C -0.231 4.231 12 H 0.074 0.926 13 C 0.017 3.983 14 N -0.883 5.883 15 Si 0.895 3.105 16 H -0.277 1.277 17 H -0.290 1.290 18 H -0.283 1.283 19 C 0.151 3.849 20 C 0.438 3.562 21 O -0.521 6.521 22 O -0.536 6.536 23 H 0.076 0.924 24 H 0.095 0.905 25 H 0.067 0.933 26 H 0.113 0.887 27 H 0.111 0.889 28 H 0.112 0.888 29 H 0.115 0.885 30 H 0.049 0.951 31 H 0.064 0.936 32 H 0.258 0.742 33 H 0.141 0.859 34 H 0.069 0.931 35 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.829 5.122 5.617 7.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.347 4.347 2 S 0.203 5.797 3 C -0.169 4.169 4 C -0.169 4.169 5 C -0.136 4.136 6 C -0.157 4.157 7 C -0.123 4.123 8 C -0.074 4.074 9 C 0.050 3.950 10 N -0.262 5.262 11 C -0.362 4.362 12 H 0.092 0.908 13 C -0.184 4.184 14 N -0.526 5.526 15 Si 0.724 3.276 16 H -0.202 1.202 17 H -0.216 1.216 18 H -0.209 1.209 19 C 0.021 3.979 20 C 0.279 3.721 21 O -0.408 6.408 22 O -0.347 6.347 23 H 0.095 0.905 24 H 0.114 0.886 25 H 0.086 0.914 26 H 0.130 0.870 27 H 0.129 0.871 28 H 0.130 0.870 29 H 0.133 0.867 30 H 0.068 0.932 31 H 0.082 0.918 32 H 0.068 0.932 33 H 0.157 0.843 34 H 0.087 0.913 35 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -1.658 3.923 5.623 7.054 hybrid contribution -0.562 0.158 -0.528 0.787 sum -2.219 4.081 5.095 6.895 Atomic orbital electron populations 1.23837 1.01013 1.05701 1.04161 1.86526 1.00520 1.02091 1.90552 1.21616 0.95895 0.97123 1.02270 1.20999 0.97688 0.93317 1.04846 1.20783 0.96203 0.95013 1.01613 1.20933 0.92977 0.98716 1.03084 1.20866 0.98643 0.92267 1.00553 1.20547 0.94170 0.95289 0.97413 1.20103 0.92763 0.93507 0.88592 1.43501 1.40332 1.32655 1.09707 1.19026 1.27790 0.95114 0.94220 0.90810 1.25037 0.97976 0.96695 0.98658 1.69912 1.47715 1.26103 1.08821 0.86464 0.78605 0.84427 0.78074 1.20241 1.21610 1.20907 1.20759 0.80308 0.94779 1.02045 1.26815 0.88237 0.80159 0.76935 1.90572 1.85053 1.30962 1.34202 1.84732 1.19933 1.65834 1.64161 0.90515 0.88613 0.91387 0.86950 0.87050 0.86985 0.86685 0.93236 0.91750 0.93223 0.84272 0.91298 0.75957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.71 9.15 101.05 0.92 -1.79 16 2 S -0.04 -0.86 17.99 -107.50 -1.93 -2.80 16 3 C -0.06 -1.09 6.11 -39.04 -0.24 -1.33 16 4 C -0.14 -2.53 9.36 -39.37 -0.37 -2.90 16 5 C -0.12 -1.86 10.04 -39.61 -0.40 -2.26 16 6 C -0.14 -2.17 10.04 -39.53 -0.40 -2.57 16 7 C -0.10 -1.81 9.66 -39.61 -0.38 -2.19 16 8 C -0.07 -1.31 5.48 -104.41 -0.57 -1.89 16 9 C 0.18 3.73 5.40 -5.20 -0.03 3.70 16 10 N -0.54 -12.97 1.92 -175.98 -0.34 -13.31 16 11 C -0.23 -5.94 7.14 -15.06 -0.11 -6.04 16 12 H 0.07 1.96 7.25 -52.49 -0.38 1.57 16 13 C 0.02 0.44 4.94 -17.43 -0.09 0.35 16 14 N -0.88 -23.77 11.33 55.49 0.63 -23.14 16 15 Si 0.90 21.24 29.61 -169.99 -5.03 16.21 16 16 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 17 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 18 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 19 C 0.15 3.42 5.85 -5.19 -0.03 3.39 16 20 C 0.44 9.42 8.40 36.01 0.30 9.72 16 21 O -0.52 -12.55 17.19 -18.74 -0.32 -12.87 16 22 O -0.54 -9.45 13.42 -39.26 -0.53 -9.98 16 23 H 0.08 1.18 7.75 -51.92 -0.40 0.78 16 24 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 25 H 0.07 0.90 7.75 -51.92 -0.40 0.49 16 26 H 0.11 1.76 5.88 -52.49 -0.31 1.46 16 27 H 0.11 1.46 8.06 -52.49 -0.42 1.03 16 28 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 29 H 0.12 1.81 8.04 -52.49 -0.42 1.39 16 30 H 0.05 0.98 7.93 -51.93 -0.41 0.56 16 31 H 0.06 1.39 7.15 -51.93 -0.37 1.02 16 32 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 33 H 0.14 3.50 5.34 -51.93 -0.28 3.23 16 34 H 0.07 1.44 8.10 -51.93 -0.42 1.02 16 35 H 0.38 4.97 9.10 45.56 0.41 5.39 16 LS Contribution 311.21 15.07 4.69 4.69 Total: -1.00 -30.08 311.21 -7.60 -37.68 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -3.39 Total: 7.31 kcal Atomic # 6 Polarization: -2.42 SS G_CDS: -1.38 Total: -3.80 kcal Atomic # 7 Polarization: -36.74 SS G_CDS: 0.29 Total: -36.45 kcal Atomic # 8 Polarization: -22.00 SS G_CDS: -0.85 Total: -22.85 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.03 Total: 16.21 kcal Atomic # 16 Polarization: -0.86 SS G_CDS: -1.93 Total: -2.80 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.08 -7.60 -37.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599824075.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.698 kcal (2) G-P(sol) polarization free energy of solvation -30.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds