Wall clock time and date at job start Tue Mar 31 2020 06:02:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.36351 * 125.84486 * 34.61749 * 3 2 1 5 5 C 1.41437 * 107.01468 * 180.28140 * 4 3 2 6 6 C 1.47357 * 126.47051 * 179.70378 * 5 4 3 7 7 O 1.21618 * 119.99456 * 0.02562 * 6 5 4 8 8 N 1.34769 * 119.99831 * 180.02562 * 6 5 4 9 9 C 1.39885 * 119.99845 * 174.87110 * 8 6 5 10 10 C 1.39298 * 119.94691 * 146.35077 * 9 8 6 11 11 C 1.38484 * 120.42532 * 180.02562 * 10 9 8 12 12 C 1.37687 * 120.32259 * 359.97438 * 11 10 9 13 13 C 1.40741 * 119.88911 * 0.02562 * 12 11 10 14 14 C 1.41411 * 120.21195 * 179.97438 * 13 12 11 15 15 H 1.07998 * 120.00230 * 151.79975 * 14 13 12 16 16 C 1.39932 * 119.99932 * 331.80161 * 14 13 12 17 17 N 1.30836 * 120.00099 * 348.98777 * 16 14 13 18 18 Si 1.86796 * 119.99994 * 168.99007 * 16 14 13 19 19 H 1.48499 * 109.47288 * 90.00140 * 18 16 14 20 20 H 1.48502 * 109.46924 * 210.00130 * 18 16 14 21 21 H 1.48496 * 109.47229 * 329.99820 * 18 16 14 22 22 C 1.38253 * 119.94681 * 326.08022 * 9 8 6 23 23 C 1.38143 * 107.05905 * 359.58208 * 5 4 3 24 24 N 1.34435 * 108.38313 * 0.42790 * 23 5 4 25 25 H 0.97002 * 125.38647 * 179.76679 * 24 23 5 26 26 H 1.08002 * 126.49306 * 0.03242 * 4 3 2 27 27 H 0.96995 * 120.00513 * 354.87212 * 8 6 5 28 28 H 1.07997 * 119.79011 * 0.02562 * 10 9 8 29 29 H 1.07999 * 119.83945 * 180.02562 * 11 10 9 30 30 H 1.08000 * 120.05601 * 179.97438 * 12 11 10 31 31 H 0.96995 * 119.99766 * 180.02562 * 17 16 14 32 32 H 1.08007 * 120.16279 * 359.97176 * 22 9 8 33 33 H 1.07999 * 125.80556 * 180.14729 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3669 -0.9086 -0.6279 5 6 4.7054 -0.5361 -0.3631 6 6 5.9171 -1.2308 -0.8326 7 8 5.8178 -2.2291 -1.5200 8 7 7.1353 -0.7597 -0.5003 9 6 8.2829 -1.4769 -0.8543 10 6 9.4556 -0.7977 -1.1767 11 6 10.5973 -1.4977 -1.5291 12 6 10.5857 -2.8741 -1.5640 13 6 9.4083 -3.5740 -1.2408 14 6 9.3886 -4.9876 -1.2750 15 1 8.7133 -5.5339 -0.6333 16 6 10.2441 -5.6784 -2.1404 17 7 10.9030 -5.0289 -3.0655 18 14 10.4454 -7.5281 -1.9750 19 1 9.4380 -8.2136 -2.8238 20 1 11.8096 -7.9187 -2.4126 21 1 10.2486 -7.9226 -0.5569 22 6 8.2531 -2.8589 -0.8782 23 6 4.6622 0.6035 0.4165 24 7 3.3738 0.9194 0.6347 25 1 3.0613 1.6752 1.1562 26 1 3.0396 -1.7554 -1.2129 27 1 7.2163 0.0765 -0.0156 28 1 9.4745 0.2818 -1.1517 29 1 11.5014 -0.9615 -1.7768 30 1 11.4785 -3.4157 -1.8398 31 1 11.4957 -5.5078 -3.6655 32 1 7.3458 -3.3867 -0.6237 33 1 5.5179 1.1456 0.7911 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001640868033.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:35 Heat of formation + Delta-G solvation = 63.474210 kcal Electronic energy + Delta-G solvation = -19742.718113 eV Core-core repulsion = 16541.164744 eV Total energy + Delta-G solvation = -3201.553369 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.090 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.73483 -39.29197 -37.04939 -36.71759 -34.39845 -33.00459 -31.70853 -30.20932 -29.77345 -27.93170 -25.26361 -23.52873 -22.79965 -21.06432 -20.59185 -20.30485 -19.02698 -17.63441 -16.40667 -16.08239 -15.44610 -15.34391 -14.98655 -14.59122 -14.41729 -14.19057 -13.80224 -13.36107 -13.27651 -12.99303 -12.87740 -12.73952 -12.50618 -12.06712 -11.66103 -11.27069 -11.05848 -10.62801 -10.46868 -10.12354 -9.70849 -9.47816 -9.39472 -9.13291 -8.84391 -8.66546 -7.37793 -6.84888 -6.62132 -4.30261 1.06157 1.70594 1.96051 2.81249 2.82617 2.97305 3.13370 3.14053 3.18170 3.25319 3.53209 3.84947 3.88025 4.02631 4.58649 4.71670 4.75669 5.03374 5.54409 5.69848 5.76035 6.18846 6.27893 6.33442 6.41032 6.77988 6.81996 7.06045 7.09084 7.12414 7.13409 7.31937 7.61340 7.76984 8.01135 8.13936 8.22133 8.32840 8.69140 8.79925 8.99569 9.02996 10.31151 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.024834 B = 0.003568 C = 0.003187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.209552 B = 7844.929849 C = 8782.975489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C 0.283 3.717 3 C 0.038 3.962 4 C -0.046 4.046 5 C -0.212 4.212 6 C 0.575 3.425 7 O -0.512 6.512 8 N -0.665 5.665 9 C 0.151 3.849 10 C -0.259 4.259 11 C -0.095 4.095 12 C -0.168 4.168 13 C 0.118 3.882 14 C -0.457 4.457 15 H 0.076 0.924 16 C 0.073 3.927 17 N -0.801 5.801 18 Si 0.910 3.090 19 H -0.270 1.270 20 H -0.277 1.277 21 H -0.262 1.262 22 C -0.206 4.206 23 C 0.079 3.921 24 N -0.521 5.521 25 H 0.425 0.575 26 H 0.162 0.838 27 H 0.395 0.605 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.121 0.879 31 H 0.278 0.722 32 H 0.108 0.892 33 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.846 11.872 7.383 16.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.086 5.086 2 C -0.033 4.033 3 C -0.073 4.073 4 C -0.074 4.074 5 C -0.222 4.222 6 C 0.362 3.638 7 O -0.387 6.387 8 N -0.309 5.309 9 C 0.060 3.940 10 C -0.280 4.280 11 C -0.114 4.114 12 C -0.188 4.188 13 C 0.115 3.885 14 C -0.487 4.487 15 H 0.095 0.905 16 C -0.143 4.143 17 N -0.428 5.428 18 Si 0.735 3.265 19 H -0.195 1.195 20 H -0.202 1.202 21 H -0.186 1.186 22 C -0.228 4.228 23 C -0.062 4.062 24 N -0.115 5.115 25 H 0.263 0.737 26 H 0.179 0.821 27 H 0.228 0.772 28 H 0.107 0.893 29 H 0.109 0.891 30 H 0.139 0.861 31 H 0.089 0.911 32 H 0.126 0.874 33 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -9.649 11.209 6.781 16.271 hybrid contribution 0.485 0.100 0.388 0.629 sum -9.164 11.310 7.169 16.226 Atomic orbital electron populations 1.81323 1.11275 1.07120 1.08920 1.24280 0.90792 0.94396 0.93797 1.15140 0.83255 0.98518 1.10406 1.21158 0.90393 0.97942 0.97910 1.19800 0.94200 0.99778 1.08467 1.17345 0.82040 0.84317 0.80102 1.90872 1.86257 1.25032 1.36490 1.43254 1.04959 1.25320 1.57329 1.17384 0.84648 0.91147 1.00854 1.20042 0.94275 0.96816 1.16912 1.20476 0.95948 0.94768 1.00188 1.21411 0.99001 0.92359 1.06015 1.17508 0.89651 0.93335 0.87970 1.19546 1.18174 0.91426 1.19580 0.90542 1.25877 0.93794 1.00937 0.93700 1.69804 1.21837 1.38013 1.13104 0.86278 0.78146 0.82295 0.79764 1.19527 1.20245 1.18573 1.21003 0.98433 0.91073 1.12265 1.22534 0.86182 0.97603 0.99901 1.41519 1.05647 1.23763 1.40597 0.73673 0.82058 0.77154 0.89310 0.89085 0.86119 0.91064 0.87427 0.79527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -4.99 18.54 41.84 0.78 -4.21 16 2 C 0.28 2.85 15.88 -22.47 -0.36 2.49 16 3 C 0.04 0.34 6.90 -83.98 -0.58 -0.24 16 4 C -0.05 -0.51 10.59 -39.04 -0.41 -0.92 16 5 C -0.21 -2.51 6.13 -105.00 -0.64 -3.16 16 6 C 0.57 9.81 7.54 -12.55 -0.09 9.72 16 7 O -0.51 -11.42 14.63 5.26 0.08 -11.35 16 8 N -0.67 -10.90 5.32 -10.90 -0.06 -10.95 16 9 C 0.15 3.28 6.26 -83.78 -0.52 2.76 16 10 C -0.26 -5.47 9.97 -39.10 -0.39 -5.86 16 11 C -0.09 -2.16 10.02 -39.69 -0.40 -2.56 16 12 C -0.17 -4.36 8.66 -38.84 -0.34 -4.69 16 13 C 0.12 3.22 5.55 -106.85 -0.59 2.62 16 14 C -0.46 -12.48 9.06 -37.74 -0.34 -12.83 16 15 H 0.08 2.03 7.87 -52.49 -0.41 1.61 16 16 C 0.07 1.89 5.25 -17.34 -0.09 1.79 16 17 N -0.80 -21.17 10.81 55.55 0.60 -20.57 16 18 Si 0.91 19.20 29.57 -169.99 -5.03 14.18 16 19 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 20 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 21 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 22 C -0.21 -5.23 8.39 -38.68 -0.32 -5.56 16 23 C 0.08 0.55 11.43 -16.45 -0.19 0.36 16 24 N -0.52 -3.00 6.02 -10.29 -0.06 -3.06 16 25 H 0.42 0.96 8.96 -40.82 -0.37 0.59 16 26 H 0.16 1.84 8.06 -52.49 -0.42 1.42 16 27 H 0.39 4.51 7.74 -40.82 -0.32 4.20 16 28 H 0.09 1.58 8.06 -52.49 -0.42 1.16 16 29 H 0.09 1.83 8.06 -52.49 -0.42 1.40 16 30 H 0.12 3.23 6.18 -52.49 -0.32 2.90 16 31 H 0.28 6.70 8.30 -40.82 -0.34 6.36 16 32 H 0.11 2.81 6.44 -52.48 -0.34 2.48 16 33 H 0.19 0.57 7.45 -52.49 -0.39 0.18 16 LS Contribution 304.96 15.07 4.60 4.60 Total: -1.00 -33.79 304.96 -6.92 -40.72 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -2.55 Total: 6.71 kcal Atomic # 6 Polarization: -10.79 SS G_CDS: -5.28 Total: -16.07 kcal Atomic # 7 Polarization: -40.04 SS G_CDS: 1.26 Total: -38.79 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: 0.08 Total: -11.35 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -5.03 Total: 14.18 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -33.79 -6.92 -40.72 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001640868033.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.190 kcal (2) G-P(sol) polarization free energy of solvation -33.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds