Wall clock time and date at job start Tue Mar 31 2020 06:20:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 S 1.81400 * 109.47081 * 220.89328 * 3 2 1 5 5 C 1.81399 * 102.99926 * 179.97438 * 4 3 2 6 6 C 1.50701 * 109.47017 * 179.97438 * 5 4 3 7 7 O 1.21287 * 120.00014 * 0.02562 * 6 5 4 8 8 N 1.34776 * 120.00086 * 179.97438 * 6 5 4 9 9 C 1.47863 * 126.94398 * 359.97438 * 8 6 5 10 10 C 1.56017 * 105.10619 * 182.01975 * 9 8 6 11 11 H 1.09004 * 116.25262 * 158.83091 * 10 9 8 12 12 C 1.57087 * 99.60698 * 32.80274 * 10 9 8 13 13 C 1.49291 * 126.94455 * 180.02562 * 8 6 5 14 14 H 1.08994 * 116.15366 * 16.67761 * 13 8 6 15 15 C 1.56030 * 104.08969 * 246.67914 * 13 8 6 16 16 N 1.49061 * 105.20455 * 288.09605 * 15 13 8 17 17 C 1.36940 * 127.54756 * 182.01146 * 16 15 13 18 18 H 1.07994 * 120.00637 * 181.21629 * 17 16 15 19 19 C 1.38819 * 119.99517 * 1.21985 * 17 16 15 20 20 N 1.31620 * 119.99979 * 0.02562 * 19 17 16 21 21 Si 1.86792 * 119.99866 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47218 * 90.00172 * 21 19 17 23 23 H 1.48502 * 109.46969 * 209.99732 * 21 19 17 24 24 H 1.48503 * 109.47223 * 329.99848 * 21 19 17 25 25 H 1.09002 * 109.47126 * 100.89319 * 3 2 1 26 26 H 1.08995 * 109.47410 * 340.89408 * 3 2 1 27 27 H 1.09003 * 109.46869 * 60.00375 * 5 4 3 28 28 H 1.08996 * 109.47647 * 299.99880 * 5 4 3 29 29 H 1.09001 * 110.32061 * 63.11368 * 9 8 6 30 30 H 1.09002 * 110.39822 * 300.96998 * 9 8 6 31 31 H 1.09004 * 112.36292 * 64.27442 * 12 10 9 32 32 H 1.08997 * 112.36893 * 191.71020 * 12 10 9 33 33 H 1.09000 * 110.31326 * 47.67178 * 15 13 8 34 34 H 1.08995 * 110.31218 * 169.85759 * 15 13 8 35 35 H 0.96999 * 120.00214 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 16 3.2121 1.2938 1.1196 5 6 5.0146 1.1395 0.9864 6 6 5.6734 2.1646 1.8731 7 8 4.9938 2.9241 2.5306 8 7 7.0177 2.2367 1.9363 9 6 7.9882 1.3921 1.2074 10 6 9.3908 1.8725 1.6935 11 1 10.2132 1.1691 1.5632 12 6 9.0345 2.2687 3.1712 13 6 7.8279 3.1846 2.7572 14 1 7.3013 3.6907 3.5662 15 6 8.5379 4.0892 1.7026 16 7 9.5712 3.2187 1.0730 17 6 10.4821 3.5663 0.1115 18 1 11.1678 2.8271 -0.2753 19 6 10.5242 4.8691 -0.3660 20 7 9.6889 5.7702 0.1058 21 14 11.7663 5.3432 -1.6781 22 1 11.1709 5.1336 -3.0222 23 1 12.1346 6.7729 -1.5174 24 1 12.9808 4.5003 -1.5376 25 1 2.9713 0.1950 -1.0092 26 1 2.9718 -0.9702 0.3363 27 1 5.3180 1.3052 -0.0474 28 1 5.3178 0.1401 1.2983 29 1 7.8884 1.5425 0.1324 30 1 7.8405 0.3415 1.4573 31 1 8.7192 1.4114 3.7660 32 1 9.8344 2.8296 3.6546 33 1 7.8208 4.4389 0.9599 34 1 9.0193 4.9354 2.1927 35 1 9.7180 6.6805 -0.2281 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753417420.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:25 Heat of formation + Delta-G solvation = 59.955182 kcal Electronic energy + Delta-G solvation = -19421.201596 eV Core-core repulsion = 16354.939583 eV Total energy + Delta-G solvation = -3066.262014 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.14012 -37.94055 -36.91810 -33.71179 -31.92476 -30.67815 -29.96915 -28.78242 -28.38001 -25.28565 -23.59464 -20.96931 -19.95584 -18.87951 -18.22968 -17.25894 -16.51462 -16.37747 -15.91648 -15.55032 -15.15726 -14.62490 -14.46022 -14.00346 -13.70474 -13.33583 -13.11928 -12.68515 -12.45419 -12.26842 -12.12696 -11.98916 -11.74966 -11.37471 -11.09211 -10.92794 -10.87136 -10.66769 -10.36530 -10.24392 -10.14076 -9.73154 -9.67759 -8.79755 -8.17763 -7.90544 -7.01427 -5.83992 -3.18718 0.79649 2.07044 2.41396 2.79806 2.81852 3.25492 3.32668 3.37520 3.40583 3.47952 4.35074 4.54315 4.61501 4.81857 4.86033 4.98733 5.08283 5.12103 5.27811 5.48268 5.53741 5.67177 5.78073 6.03971 6.16447 6.31310 6.35928 6.50012 6.57513 7.15217 7.32941 7.37146 7.62876 7.89900 8.00292 8.35843 9.00806 9.63451 10.32530 11.28738 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.024144 B = 0.003914 C = 0.003659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.446211 B = 7152.410676 C = 7650.632132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C 0.225 3.775 3 C -0.028 4.028 4 S -0.137 6.137 5 C -0.124 4.124 6 C 0.544 3.456 7 O -0.535 6.535 8 N -0.602 5.602 9 C 0.080 3.920 10 C 0.140 3.860 11 H 0.107 0.893 12 C -0.152 4.152 13 C 0.101 3.899 14 H 0.116 0.884 15 C 0.172 3.828 16 N -0.597 5.597 17 C -0.233 4.233 18 H 0.081 0.919 19 C -0.005 4.005 20 N -0.918 5.918 21 Si 0.913 3.087 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.281 1.281 25 H 0.128 0.872 26 H 0.127 0.873 27 H 0.115 0.885 28 H 0.112 0.888 29 H 0.072 0.928 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.086 0.914 33 H 0.047 0.953 34 H 0.060 0.940 35 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.835 -13.271 1.632 14.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.090 5.090 2 C -0.094 4.094 3 C -0.178 4.178 4 S 0.088 5.912 5 C -0.275 4.275 6 C 0.330 3.670 7 O -0.413 6.413 8 N -0.336 5.336 9 C -0.046 4.046 10 C 0.031 3.969 11 H 0.124 0.876 12 C -0.191 4.191 13 C -0.001 4.001 14 H 0.134 0.866 15 C 0.047 3.953 16 N -0.321 5.321 17 C -0.361 4.361 18 H 0.099 0.901 19 C -0.202 4.202 20 N -0.564 5.564 21 Si 0.743 3.257 22 H -0.216 1.216 23 H -0.216 1.216 24 H -0.206 1.206 25 H 0.146 0.854 26 H 0.145 0.855 27 H 0.133 0.867 28 H 0.131 0.869 29 H 0.090 0.910 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.104 0.896 33 H 0.065 0.935 34 H 0.078 0.922 35 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -7.468 -11.921 2.409 14.272 hybrid contribution 1.829 -0.582 -1.690 2.557 sum -5.639 -12.503 0.719 13.735 Atomic orbital electron populations 1.81260 1.12143 1.07731 1.07869 1.27774 0.93764 0.93942 0.93887 1.20826 0.86064 1.04883 1.06043 1.88016 1.02301 1.43866 1.57062 1.23571 0.95243 1.03608 1.05066 1.19013 0.81267 0.84233 0.82486 1.90736 1.62110 1.43194 1.45268 1.49132 1.03569 1.36194 1.44703 1.23365 0.91654 0.92600 0.96973 1.23155 0.92749 0.89986 0.90978 0.87570 1.24180 0.97963 0.99083 0.97914 1.24376 0.89216 0.91780 0.94727 0.86644 1.22126 0.89947 0.91098 0.92121 1.45522 1.37670 1.03838 1.45103 1.19026 1.09832 0.94519 1.12738 0.90074 1.24828 0.99248 0.96041 1.00073 1.69895 1.38515 1.02980 1.45039 0.86118 0.80559 0.77703 0.81306 1.21600 1.21650 1.20614 0.85420 0.85521 0.86691 0.86949 0.90957 0.92575 0.91605 0.89595 0.93472 0.92212 0.93487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -5.32 18.54 42.15 0.78 -4.54 16 2 C 0.22 2.24 15.44 -20.76 -0.32 1.92 16 3 C -0.03 -0.18 6.42 34.37 0.22 0.04 16 4 S -0.14 -1.57 20.83 -107.50 -2.24 -3.81 16 5 C -0.12 -1.34 5.71 36.01 0.21 -1.14 16 6 C 0.54 8.79 7.91 -10.99 -0.09 8.70 16 7 O -0.54 -10.67 16.21 5.55 0.09 -10.58 16 8 N -0.60 -9.85 2.95 -156.80 -0.46 -10.31 16 9 C 0.08 1.15 6.03 -1.68 -0.01 1.14 16 10 C 0.14 2.35 5.48 -62.53 -0.34 2.01 16 11 H 0.11 1.58 8.14 -51.93 -0.42 1.15 16 12 C -0.15 -2.34 6.80 -22.32 -0.15 -2.49 16 13 C 0.10 1.81 5.24 -62.57 -0.33 1.49 16 14 H 0.12 2.03 8.06 -51.93 -0.42 1.62 16 15 C 0.17 3.89 4.82 -1.00 0.00 3.88 16 16 N -0.60 -13.46 3.08 -155.34 -0.48 -13.94 16 17 C -0.23 -5.90 10.38 -15.06 -0.16 -6.06 16 18 H 0.08 1.95 7.83 -52.49 -0.41 1.54 16 19 C 0.00 -0.13 5.49 -17.43 -0.10 -0.22 16 20 N -0.92 -25.89 10.66 55.49 0.59 -25.30 16 21 Si 0.91 20.95 29.55 -169.99 -5.02 15.92 16 22 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 24 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 25 H 0.13 0.53 8.14 -51.92 -0.42 0.11 16 26 H 0.13 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.11 1.09 8.14 -51.92 -0.42 0.67 16 28 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.09 1.38 8.14 -51.93 -0.42 0.95 16 33 H 0.05 1.24 7.77 -51.93 -0.40 0.83 16 34 H 0.06 1.51 7.44 -51.93 -0.39 1.12 16 35 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 315.56 15.07 4.76 4.76 Total: -1.00 -32.87 315.56 -7.62 -40.48 By element: Atomic # 1 Polarization: 2.60 SS G_CDS: -4.56 Total: -1.96 kcal Atomic # 6 Polarization: 10.34 SS G_CDS: -1.07 Total: 9.27 kcal Atomic # 7 Polarization: -54.52 SS G_CDS: 0.43 Total: -54.09 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: 0.09 Total: -10.58 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.92 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.24 Total: -3.81 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -32.87 -7.62 -40.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753417420.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.438 kcal (2) G-P(sol) polarization free energy of solvation -32.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds