Wall clock time and date at job start Tue Mar 31 2020 05:39:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 C 1.53002 * 109.47092 * 239.99925 * 2 1 3 5 5 N 1.46496 * 109.47421 * 60.00300 * 4 2 1 6 6 C 1.34777 * 120.00258 * 180.02562 * 5 4 2 7 7 O 1.21682 * 119.99992 * 359.97438 * 6 5 4 8 8 C 1.46376 * 119.99803 * 180.02562 * 6 5 4 9 9 H 1.07999 * 120.00155 * 359.97438 * 8 6 5 10 10 C 1.40050 * 119.99867 * 179.97438 * 8 6 5 11 11 N 1.30676 * 119.99970 * 0.02562 * 10 8 6 12 12 Si 1.86800 * 120.00165 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.46689 * 0.02562 * 12 10 8 14 14 H 1.48497 * 109.46761 * 120.00260 * 12 10 8 15 15 H 1.48492 * 109.47121 * 240.00419 * 12 10 8 16 16 C 1.50706 * 109.47103 * 120.00197 * 2 1 3 17 17 C 1.38240 * 119.98824 * 119.72953 * 16 2 1 18 18 C 1.38214 * 120.00943 * 179.72617 * 17 16 2 19 19 C 1.38349 * 119.99017 * 0.54602 * 18 17 16 20 20 Cl 1.73599 * 120.01664 * 179.70575 * 19 18 17 21 21 C 1.38361 * 119.97123 * 359.72270 * 19 18 17 22 22 C 1.38214 * 119.98667 * 0.02562 * 21 19 18 23 23 H 1.08992 * 109.47280 * 299.99702 * 1 2 3 24 24 H 1.09002 * 109.46777 * 60.00422 * 1 2 3 25 25 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 179.97438 * 3 2 1 27 27 H 1.09002 * 109.47153 * 299.99992 * 3 2 1 28 28 H 1.09001 * 109.46832 * 59.99801 * 3 2 1 29 29 H 1.09004 * 109.46930 * 180.02562 * 4 2 1 30 30 H 1.09004 * 109.47059 * 299.99666 * 4 2 1 31 31 H 0.97008 * 119.99406 * 359.97438 * 5 4 2 32 32 H 0.96996 * 119.99788 * 180.02562 * 11 10 8 33 33 H 1.07998 * 119.99492 * 359.97438 * 17 16 2 34 34 H 1.08002 * 120.00519 * 180.26657 * 18 17 16 35 35 H 1.07998 * 120.00288 * 179.97438 * 21 19 18 36 36 H 1.07996 * 119.99198 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 1.5517 -0.0307 -2.4454 6 6 1.8769 -0.4915 -3.6695 7 8 2.5764 -1.4809 -3.7812 8 6 1.3895 0.1989 -4.8647 9 1 0.7690 1.0773 -4.7656 10 6 1.7278 -0.2796 -6.1367 11 7 2.4782 -1.3427 -6.2566 12 14 1.1053 0.6010 -7.6619 13 1 0.2808 1.7681 -7.2577 14 1 2.2603 1.0675 -8.4702 15 1 0.2802 -0.3323 -8.4702 16 6 2.0323 -0.7105 1.2305 17 6 2.8224 -1.8377 1.1033 18 6 3.2881 -2.4863 2.2315 19 6 2.9540 -2.0139 3.4882 20 17 3.5321 -2.8326 4.9057 21 6 2.1585 -0.8890 3.6148 22 6 1.6978 -0.2381 2.4859 23 1 -0.3633 0.5137 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 3.1300 -0.7217 -1.2490 30 1 1.6767 -1.7490 -1.2492 31 1 0.9938 0.7578 -2.3564 32 1 2.7129 -1.6738 -7.1375 33 1 3.0792 -2.2092 0.1223 34 1 3.9089 -3.3644 2.1321 35 1 1.8971 -0.5200 4.5956 36 1 1.0766 0.6398 2.5846 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041569355.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:16 Heat of formation + Delta-G solvation = -36.631466 kcal Electronic energy + Delta-G solvation = -19304.089944 eV Core-core repulsion = 16199.303162 eV Total energy + Delta-G solvation = -3104.786783 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.092 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.04297 -37.74041 -36.67823 -35.65018 -32.65805 -31.84349 -31.19963 -29.44335 -27.12909 -27.05378 -25.22270 -22.86914 -22.40997 -19.90257 -18.94524 -17.59212 -16.99718 -15.55418 -15.44420 -15.01760 -14.48458 -14.44798 -14.22499 -13.70179 -13.54942 -13.32647 -13.17021 -12.70988 -12.55121 -12.05162 -12.04295 -11.76478 -11.48658 -11.32565 -11.18738 -11.01310 -11.00439 -10.67962 -10.66619 -10.48895 -10.25649 -10.16041 -9.10219 -8.86058 -8.60121 -7.61807 -7.49152 -6.18854 -4.64003 1.08117 1.23187 2.02855 3.12544 3.20803 3.24993 3.56323 4.09815 4.52891 4.59318 4.65182 4.80614 4.93652 5.15371 5.16027 5.28052 5.30561 5.39976 5.66492 5.74231 5.80380 5.85011 5.93768 5.93822 6.03082 6.13040 6.21091 6.31315 6.38018 6.43836 6.53810 6.60923 6.75327 7.43239 7.92633 8.09749 8.32878 9.02679 9.53539 10.60129 10.78961 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.038343 B = 0.003327 C = 0.003127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.082984 B = 8414.082781 C = 8953.109391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.040 4.040 3 C -0.136 4.136 4 C 0.142 3.858 5 N -0.765 5.765 6 C 0.555 3.445 7 O -0.582 6.582 8 C -0.545 4.545 9 H 0.067 0.933 10 C 0.087 3.913 11 N -0.768 5.768 12 Si 0.907 3.093 13 H -0.264 1.264 14 H -0.276 1.276 15 H -0.276 1.276 16 C -0.053 4.053 17 C -0.105 4.105 18 C -0.107 4.107 19 C -0.043 4.043 20 Cl -0.081 7.081 21 C -0.112 4.112 22 C -0.104 4.104 23 H 0.053 0.947 24 H 0.066 0.934 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.066 0.934 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.379 0.621 32 H 0.267 0.733 33 H 0.143 0.857 34 H 0.132 0.868 35 H 0.129 0.871 36 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.043 2.880 18.105 18.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.040 4.040 3 C -0.193 4.193 4 C 0.017 3.983 5 N -0.421 5.421 6 C 0.358 3.642 7 O -0.465 6.465 8 C -0.583 4.583 9 H 0.085 0.915 10 C -0.132 4.132 11 N -0.397 5.397 12 Si 0.731 3.269 13 H -0.188 1.188 14 H -0.202 1.202 15 H -0.202 1.202 16 C -0.054 4.054 17 C -0.123 4.123 18 C -0.125 4.125 19 C -0.070 4.070 20 Cl -0.053 7.053 21 C -0.131 4.131 22 C -0.122 4.122 23 H 0.072 0.928 24 H 0.085 0.915 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.085 0.915 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.212 0.788 32 H 0.078 0.922 33 H 0.160 0.840 34 H 0.150 0.850 35 H 0.147 0.853 36 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -1.371 1.928 18.026 18.181 hybrid contribution -0.462 0.655 -0.516 0.954 sum -1.833 2.583 17.510 17.795 Atomic orbital electron populations 1.21859 0.93174 1.02386 1.01866 1.19798 0.96263 0.95717 0.92223 1.21859 1.01479 0.94076 1.01864 1.20987 0.97999 0.95379 0.83908 1.46172 1.57852 1.32961 1.05149 1.18210 0.80254 0.84202 0.81494 1.90595 1.41572 1.28327 1.85964 1.20912 1.34065 1.13672 0.89610 0.91470 1.25706 0.93379 0.94112 1.00029 1.70032 1.27090 1.18618 1.23939 0.86335 0.79088 0.79975 0.81461 1.18805 1.20197 1.20193 1.19948 0.96075 0.94893 0.94467 1.21369 0.96802 0.94980 0.99155 1.21086 1.00394 1.00594 0.90469 1.20915 1.01648 0.96616 0.87781 1.98355 1.87970 1.78773 1.40174 1.20970 0.97947 0.94659 0.99489 1.20928 1.00086 1.00049 0.91159 0.92787 0.91487 0.92371 0.92371 0.91482 0.92795 0.93114 0.93118 0.78810 0.92199 0.83974 0.85004 0.85264 0.85196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 8.11 37.16 0.30 -1.38 16 2 C -0.04 -0.54 0.61 -155.66 -0.10 -0.63 16 3 C -0.14 -1.68 8.11 37.16 0.30 -1.38 16 4 C 0.14 2.61 3.22 -4.04 -0.01 2.60 16 5 N -0.76 -16.40 4.95 -61.72 -0.31 -16.71 16 6 C 0.55 15.51 7.75 -12.99 -0.10 15.41 16 7 O -0.58 -18.65 15.02 5.21 0.08 -18.57 16 8 C -0.55 -15.21 9.54 -35.63 -0.34 -15.55 16 9 H 0.07 1.71 7.85 -52.49 -0.41 1.30 16 10 C 0.09 2.42 5.50 -17.36 -0.10 2.33 16 11 N -0.77 -22.94 11.83 55.55 0.66 -22.28 16 12 Si 0.91 19.97 29.56 -169.99 -5.02 14.95 16 13 H -0.26 -5.60 7.11 56.52 0.40 -5.20 16 14 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 15 H -0.28 -5.99 7.11 56.52 0.40 -5.58 16 16 C -0.05 -0.67 4.76 -104.62 -0.50 -1.17 16 17 C -0.11 -1.39 8.97 -39.59 -0.36 -1.74 16 18 C -0.11 -1.28 9.83 -39.55 -0.39 -1.67 16 19 C -0.04 -0.49 6.32 -39.50 -0.25 -0.74 16 20 Cl -0.08 -0.86 28.96 -51.86 -1.50 -2.36 16 21 C -0.11 -1.18 9.83 -39.54 -0.39 -1.57 16 22 C -0.10 -1.12 8.71 -39.59 -0.34 -1.47 16 23 H 0.05 0.55 7.39 -51.93 -0.38 0.16 16 24 H 0.07 0.86 6.86 -51.93 -0.36 0.50 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.07 0.86 6.86 -51.93 -0.36 0.51 16 28 H 0.05 0.54 7.39 -51.93 -0.38 0.16 16 29 H 0.05 1.00 7.52 -51.93 -0.39 0.61 16 30 H 0.05 1.00 7.50 -51.93 -0.39 0.61 16 31 H 0.38 7.12 6.14 -40.82 -0.25 6.87 16 32 H 0.27 7.23 8.29 -40.82 -0.34 6.89 16 33 H 0.14 2.02 5.89 -52.49 -0.31 1.71 16 34 H 0.13 1.41 8.06 -52.49 -0.42 0.98 16 35 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 36 H 0.13 1.15 7.10 -52.49 -0.37 0.77 16 LS Contribution 314.11 15.07 4.73 4.73 Total: -1.00 -33.09 314.11 -8.06 -41.15 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -4.43 Total: 6.06 kcal Atomic # 6 Polarization: -4.70 SS G_CDS: -2.27 Total: -6.97 kcal Atomic # 7 Polarization: -39.34 SS G_CDS: 0.35 Total: -38.99 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: 0.08 Total: -18.57 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.95 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -1.50 Total: -2.36 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -33.09 -8.06 -41.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041569355.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.519 kcal (2) G-P(sol) polarization free energy of solvation -33.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds