Wall clock time and date at job start Tue Mar 31 2020 05:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38361 * 119.85527 * 2 1 4 4 C 1.37940 * 120.15945 * 180.23622 * 3 2 1 5 5 C 1.39599 * 119.87896 * 359.51192 * 4 3 2 6 6 C 1.47849 * 120.14302 * 180.23374 * 5 4 3 7 7 O 1.21559 * 119.99216 * 359.97438 * 6 5 4 8 8 N 1.34771 * 120.00678 * 180.02562 * 6 5 4 9 9 C 1.46493 * 120.00331 * 180.02562 * 8 6 5 10 10 C 1.52999 * 109.47257 * 179.97438 * 9 8 6 11 11 C 1.52997 * 109.47488 * 179.97438 * 10 9 8 12 12 C 1.50697 * 109.47719 * 179.97438 * 11 10 9 13 13 H 1.08002 * 119.99577 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00500 * 179.97438 * 12 11 10 15 15 N 1.31512 * 119.99727 * 180.02562 * 14 12 11 16 16 Si 1.86796 * 119.99773 * 0.02562 * 14 12 11 17 17 H 1.48503 * 109.47178 * 89.99900 * 16 14 12 18 18 H 1.48500 * 109.47176 * 210.00006 * 16 14 12 19 19 H 1.48505 * 109.47107 * 329.99816 * 16 14 12 20 20 C 1.39538 * 119.72285 * 0.25223 * 5 4 3 21 21 C 1.38103 * 119.83953 * 0.02562 * 20 5 4 22 22 Cl 1.73601 * 119.94136 * 179.97438 * 21 20 5 23 23 H 1.09001 * 109.46894 * 270.22980 * 1 2 3 24 24 H 1.08994 * 109.47287 * 30.22768 * 1 2 3 25 25 H 1.09003 * 109.46423 * 150.23312 * 1 2 3 26 26 H 1.08002 * 119.92307 * 0.02562 * 3 2 1 27 27 H 1.08002 * 120.06486 * 179.79391 * 4 3 2 28 28 H 0.97005 * 119.99746 * 359.97438 * 8 6 5 29 29 H 1.09000 * 109.47131 * 299.99352 * 9 8 6 30 30 H 1.09001 * 109.47490 * 59.99888 * 9 8 6 31 31 H 1.09005 * 109.47233 * 299.99780 * 10 9 8 32 32 H 1.09000 * 109.47371 * 59.99899 * 10 9 8 33 33 H 1.08997 * 109.47090 * 300.00522 * 11 10 9 34 34 H 1.09001 * 109.47146 * 59.99980 * 11 10 9 35 35 H 0.97005 * 119.99532 * 180.02562 * 15 14 12 36 36 H 1.07998 * 120.08128 * 179.97438 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1958 1.2000 0.0000 4 6 3.5752 1.2073 -0.0049 5 6 4.2771 0.0006 0.0004 6 6 5.7556 0.0017 0.0004 7 8 6.3625 1.0549 -0.0047 8 7 6.4304 -1.1649 0.0050 9 6 7.8953 -1.1637 0.0056 10 6 8.4065 -2.6058 0.0118 11 6 9.9365 -2.6047 0.0118 12 6 10.4400 -4.0250 0.0185 13 1 9.7388 -4.8464 0.0221 14 6 11.7957 -4.2759 0.0192 15 7 12.2350 -5.5155 0.0246 16 14 13.0085 -2.8552 0.0123 17 1 13.3304 -2.4723 1.4106 18 1 14.2518 -3.2690 -0.6863 19 1 12.4073 -1.6946 -0.6928 20 6 3.5774 -1.2067 0.0053 21 6 2.1964 -1.2006 0.0044 22 17 1.3233 -2.7010 0.0099 23 1 -0.3633 0.0041 1.0277 24 1 -0.3633 0.8879 -0.5173 25 1 -0.3632 -0.8921 -0.5102 26 1 1.6522 2.1332 0.0004 27 1 4.1113 2.1449 -0.0083 28 1 5.9461 -2.0054 0.0087 29 1 8.2586 -0.6531 -0.8862 30 1 8.2580 -0.6463 0.8937 31 1 8.0433 -3.1162 0.9039 32 1 8.0439 -3.1237 -0.8761 33 1 10.2994 -2.0944 -0.8804 34 1 10.2995 -2.0867 0.8995 35 1 13.1889 -5.6920 0.0254 36 1 4.1146 -2.1436 0.0091 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070940405.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:03 Heat of formation + Delta-G solvation = -39.960771 kcal Electronic energy + Delta-G solvation = -18409.251716 eV Core-core repulsion = 15304.320564 eV Total energy + Delta-G solvation = -3104.931152 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.092 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.44908 -38.83671 -36.76796 -35.62053 -33.67325 -33.08472 -31.55065 -31.02747 -28.28416 -26.79400 -23.47894 -23.21975 -22.15278 -20.78178 -20.09621 -18.14713 -16.81999 -16.48681 -15.74747 -15.51558 -15.39458 -15.15286 -14.61415 -14.37072 -14.13451 -13.98854 -13.40584 -12.82888 -12.79653 -12.70369 -12.28103 -12.11174 -11.96790 -11.70929 -11.66561 -11.25565 -11.10034 -10.91413 -10.30136 -10.02398 -9.82519 -9.65811 -9.35865 -9.24568 -9.10398 -8.88270 -8.56793 -6.07498 -4.06389 0.41070 0.78235 1.73483 2.59715 3.16877 3.30462 3.38135 3.42116 3.48854 4.23277 4.26627 4.43317 4.61729 4.71066 4.83717 5.06115 5.15929 5.18673 5.26546 5.30086 5.50946 5.59011 5.61208 5.68693 5.92252 5.94323 5.97187 6.25631 6.30119 6.40626 6.63395 6.75161 7.20260 7.33816 7.50799 7.74624 8.17263 8.48896 8.96269 9.54641 11.05743 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.028265 B = 0.002983 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.403003 B = 9385.066468 C =10344.417420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.055 4.055 3 C -0.118 4.118 4 C -0.053 4.053 5 C -0.123 4.123 6 C 0.554 3.446 7 O -0.538 6.538 8 N -0.719 5.719 9 C 0.114 3.886 10 C -0.114 4.114 11 C -0.011 4.011 12 C -0.523 4.523 13 H 0.072 0.928 14 C 0.067 3.933 15 N -0.903 5.903 16 Si 0.880 3.120 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.264 1.264 20 C -0.074 4.074 21 C -0.046 4.046 22 Cl -0.061 7.061 23 H 0.079 0.921 24 H 0.074 0.926 25 H 0.076 0.924 26 H 0.139 0.861 27 H 0.143 0.857 28 H 0.399 0.601 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.019 0.981 34 H 0.015 0.985 35 H 0.263 0.737 36 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.439 11.613 -0.049 27.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.056 4.056 3 C -0.136 4.136 4 C -0.072 4.072 5 C -0.127 4.127 6 C 0.340 3.660 7 O -0.416 6.416 8 N -0.369 5.369 9 C -0.009 4.009 10 C -0.152 4.152 11 C -0.049 4.049 12 C -0.561 4.561 13 H 0.090 0.910 14 C -0.135 4.135 15 N -0.542 5.542 16 Si 0.707 3.293 17 H -0.202 1.202 18 H -0.214 1.214 19 H -0.189 1.189 20 C -0.093 4.093 21 C -0.073 4.073 22 Cl -0.032 7.032 23 H 0.098 0.902 24 H 0.093 0.907 25 H 0.095 0.905 26 H 0.157 0.843 27 H 0.161 0.839 28 H 0.234 0.766 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.037 0.963 34 H 0.033 0.967 35 H 0.073 0.927 36 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -24.875 12.101 -0.057 27.663 hybrid contribution 0.519 -0.056 0.030 0.523 sum -24.356 12.045 -0.026 27.172 Atomic orbital electron populations 1.20947 0.89944 1.03820 1.03264 1.19997 0.97035 0.91401 0.97171 1.21013 0.93780 0.97380 1.01409 1.21400 0.93771 0.98149 0.93844 1.19988 0.93542 0.93621 1.05510 1.18138 0.86560 0.84285 0.76999 1.90780 1.69685 1.31086 1.50077 1.46114 1.08709 1.08052 1.74070 1.21720 0.77085 0.99872 1.02222 1.21724 0.99365 0.92303 1.01844 1.19500 0.90415 0.98253 0.96707 1.21091 0.92625 0.91189 1.51153 0.90995 1.25028 0.98481 0.95520 0.94450 1.69914 1.14470 1.18828 1.50951 0.86774 0.80690 0.83223 0.78601 1.20234 1.21362 1.18881 1.21244 0.92257 0.98437 0.97370 1.20666 0.92080 0.87288 1.07233 1.98378 1.76292 1.31647 1.96902 0.90228 0.90744 0.90525 0.84342 0.83881 0.76562 0.91457 0.91474 0.92025 0.92004 0.96262 0.96702 0.92679 0.84310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.69 9.61 36.01 0.35 -0.35 16 2 C -0.05 -0.44 5.89 -104.50 -0.62 -1.06 16 3 C -0.12 -0.92 9.68 -39.64 -0.38 -1.30 16 4 C -0.05 -0.53 9.59 -39.18 -0.38 -0.90 16 5 C -0.12 -1.42 5.87 -104.97 -0.62 -2.03 16 6 C 0.55 8.01 7.77 -12.33 -0.10 7.92 16 7 O -0.54 -9.60 16.35 5.31 0.09 -9.51 16 8 N -0.72 -9.88 5.51 -61.25 -0.34 -10.22 16 9 C 0.11 1.85 5.67 -4.05 -0.02 1.83 16 10 C -0.11 -2.10 5.27 -26.73 -0.14 -2.24 16 11 C -0.01 -0.25 4.04 -27.89 -0.11 -0.36 16 12 C -0.52 -14.66 9.66 -34.44 -0.33 -14.99 16 13 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 14 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 15 N -0.90 -27.71 13.96 55.43 0.77 -26.93 16 16 Si 0.88 21.67 27.47 -169.99 -4.67 17.00 16 17 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 18 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 19 H -0.26 -6.26 6.54 56.52 0.37 -5.89 16 20 C -0.07 -0.73 9.32 -39.15 -0.36 -1.10 16 21 C -0.05 -0.43 6.31 -39.56 -0.25 -0.68 16 22 Cl -0.06 -0.53 27.27 -51.86 -1.41 -1.95 16 23 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 24 H 0.07 0.31 8.08 -51.93 -0.42 -0.11 16 25 H 0.08 0.44 6.88 -51.93 -0.36 0.09 16 26 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 27 H 0.14 1.41 7.65 -52.49 -0.40 1.01 16 28 H 0.40 4.48 6.51 -40.82 -0.27 4.21 16 29 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.02 0.45 7.20 -51.93 -0.37 0.07 16 34 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 35 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 36 H 0.14 1.20 6.40 -52.49 -0.34 0.86 16 LS Contribution 320.83 15.07 4.83 4.83 Total: -1.00 -32.48 320.83 -8.46 -40.94 By element: Atomic # 1 Polarization: 3.94 SS G_CDS: -4.67 Total: -0.73 kcal Atomic # 6 Polarization: -10.38 SS G_CDS: -3.06 Total: -13.44 kcal Atomic # 7 Polarization: -37.59 SS G_CDS: 0.44 Total: -37.15 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: 0.09 Total: -9.51 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.67 Total: 17.00 kcal Atomic # 17 Polarization: -0.53 SS G_CDS: -1.41 Total: -1.95 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -32.48 -8.46 -40.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070940405.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.982 kcal (2) G-P(sol) polarization free energy of solvation -32.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds