Wall clock time and date at job start Tue Mar 31 2020 05:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.37092 * 120.00447 * 2 1 4 4 H 1.07997 * 120.00108 * 197.92316 * 3 2 1 5 5 C 1.38952 * 119.99760 * 17.91997 * 3 2 1 6 6 N 1.31404 * 120.00036 * 17.92045 * 5 3 2 7 7 Si 1.86804 * 119.99696 * 197.91950 * 5 3 2 8 8 H 1.48505 * 109.46830 * 94.98827 * 7 5 3 9 9 H 1.48499 * 109.46940 * 214.98659 * 7 5 3 10 10 H 1.48498 * 109.47635 * 334.98959 * 7 5 3 11 11 C 1.34784 * 119.99859 * 179.97438 * 2 1 3 12 12 O 1.21291 * 120.00042 * 175.05334 * 11 2 1 13 13 C 1.50704 * 119.99797 * 355.05783 * 11 2 1 14 14 C 1.53001 * 109.47251 * 306.81713 * 13 11 2 15 15 C 1.52998 * 109.46882 * 186.81519 * 13 11 2 16 16 C 1.50698 * 109.47249 * 66.81712 * 13 11 2 17 17 C 1.38269 * 119.99030 * 5.95876 * 16 13 11 18 18 C 1.38224 * 120.02197 * 179.97438 * 17 16 13 19 19 C 1.38230 * 120.01487 * 0.05204 * 18 17 16 20 20 C 1.38333 * 119.98780 * 359.97017 * 19 18 17 21 21 Cl 1.73598 * 120.01072 * 180.02562 * 20 19 18 22 22 C 1.38185 * 119.99580 * 185.98650 * 16 13 11 23 23 H 1.09004 * 109.46955 * 272.17455 * 1 2 3 24 24 H 1.09002 * 109.46973 * 32.16727 * 1 2 3 25 25 H 1.08994 * 109.47489 * 152.17232 * 1 2 3 26 26 H 0.97001 * 119.99951 * 179.97438 * 6 5 3 27 27 H 1.08991 * 109.47275 * 188.23086 * 14 13 11 28 28 H 1.09003 * 109.46644 * 308.23371 * 14 13 11 29 29 H 1.09000 * 109.47105 * 68.23167 * 14 13 11 30 30 H 1.08994 * 109.47437 * 299.99848 * 15 13 11 31 31 H 1.09003 * 109.47197 * 60.00140 * 15 13 11 32 32 H 1.08998 * 109.47008 * 179.97438 * 15 13 11 33 33 H 1.07999 * 119.98947 * 0.02732 * 17 16 13 34 34 H 1.08004 * 119.98978 * 180.02562 * 18 17 16 35 35 H 1.08005 * 120.00536 * 180.02562 * 19 18 17 36 36 H 1.08000 * 120.00846 * 0.26747 * 22 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1872 0.0000 4 1 3.1912 1.2098 -0.2878 5 6 1.5064 2.3614 0.3703 6 7 0.3801 2.3082 1.0451 7 14 2.2416 4.0155 -0.0913 8 1 1.6273 4.4947 -1.3555 9 1 1.9740 4.9956 0.9918 10 1 3.7078 3.8711 -0.2771 11 6 2.1389 -1.1673 0.0005 12 8 3.3484 -1.1693 -0.0901 13 6 1.3895 -2.4699 0.1135 14 6 0.4748 -2.4274 1.3393 15 6 2.3867 -3.6208 0.2610 16 6 0.5588 -2.6807 -1.1260 17 6 0.6690 -1.8037 -2.1893 18 6 -0.0923 -1.9968 -3.3267 19 6 -0.9650 -3.0662 -3.4014 20 6 -1.0760 -3.9436 -2.3378 21 17 -2.1713 -5.2872 -2.4312 22 6 -0.3134 -3.7501 -1.1995 23 1 -0.3633 0.0390 1.0270 24 1 -0.3633 0.8699 -0.5471 25 1 -0.3634 -0.9087 -0.4797 26 1 -0.0694 3.1279 1.3039 27 1 0.0446 -3.4148 1.5060 28 1 1.0534 -2.1307 2.2142 29 1 -0.3250 -1.7063 1.1710 30 1 3.0383 -3.6511 -0.6123 31 1 2.9876 -3.4683 1.1575 32 1 1.8447 -4.5629 0.3432 33 1 1.3507 -0.9681 -2.1314 34 1 -0.0055 -1.3117 -4.1572 35 1 -1.5594 -3.2171 -4.2905 36 1 -0.4029 -4.4323 -0.3671 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076587552.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:11 Heat of formation + Delta-G solvation = -2.594032 kcal Electronic energy + Delta-G solvation = -20589.598225 eV Core-core repulsion = 17486.287416 eV Total energy + Delta-G solvation = -3103.310809 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.092 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.37576 -38.15401 -36.38922 -34.93045 -34.45156 -31.61760 -30.50448 -29.66170 -27.20361 -25.87018 -25.06704 -23.28990 -22.34460 -20.94967 -18.43526 -17.21578 -16.88512 -15.78999 -15.26791 -15.09142 -14.51692 -14.35786 -14.05940 -13.66138 -13.52793 -13.40188 -12.67828 -12.49672 -12.03918 -11.85100 -11.72148 -11.62514 -11.41082 -11.38573 -11.08653 -11.07040 -10.91655 -10.90590 -10.45240 -10.37323 -10.23995 -10.23091 -9.01537 -8.73292 -8.41894 -8.31384 -7.72419 -6.35628 -3.86447 1.33983 1.41873 2.18457 3.13137 3.23990 3.29274 3.78450 3.80621 4.10694 4.74041 4.82740 4.99520 5.10209 5.24894 5.33419 5.49966 5.54864 5.57890 5.73282 5.87605 6.00139 6.03930 6.19254 6.24524 6.26492 6.36545 6.40380 6.54810 6.61572 6.70187 6.79380 6.86190 6.97681 7.20938 7.55188 8.08744 8.45425 9.15357 9.40525 9.95343 10.67744 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.023761 B = 0.005449 C = 0.005020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.103095 B = 5136.868017 C = 5576.853272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.439 5.439 3 C -0.312 4.312 4 H 0.102 0.898 5 C 0.033 3.967 6 N -0.876 5.876 7 Si 0.922 3.078 8 H -0.278 1.278 9 H -0.284 1.284 10 H -0.269 1.269 11 C 0.454 3.546 12 O -0.586 6.586 13 C -0.038 4.038 14 C -0.150 4.150 15 C -0.115 4.115 16 C -0.044 4.044 17 C -0.100 4.100 18 C -0.107 4.107 19 C -0.119 4.119 20 C -0.036 4.036 21 Cl -0.083 7.083 22 C -0.107 4.107 23 H 0.058 0.942 24 H 0.066 0.934 25 H 0.042 0.958 26 H 0.267 0.733 27 H 0.055 0.945 28 H 0.062 0.938 29 H 0.079 0.921 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.051 0.949 33 H 0.141 0.859 34 H 0.130 0.870 35 H 0.128 0.872 36 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.155 -10.210 -5.183 13.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.157 5.157 3 C -0.439 4.439 4 H 0.119 0.881 5 C -0.171 4.171 6 N -0.515 5.515 7 Si 0.748 3.252 8 H -0.204 1.204 9 H -0.210 1.210 10 H -0.193 1.193 11 C 0.242 3.758 12 O -0.471 6.471 13 C -0.042 4.042 14 C -0.207 4.207 15 C -0.173 4.173 16 C -0.044 4.044 17 C -0.118 4.118 18 C -0.125 4.125 19 C -0.138 4.138 20 C -0.063 4.063 21 Cl -0.055 7.055 22 C -0.126 4.126 23 H 0.077 0.923 24 H 0.085 0.915 25 H 0.060 0.940 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.082 0.918 29 H 0.097 0.903 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.070 0.930 33 H 0.158 0.842 34 H 0.148 0.852 35 H 0.146 0.854 36 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -5.807 -10.153 -5.145 12.778 hybrid contribution -0.076 0.866 -0.094 0.875 sum -5.883 -9.287 -5.238 12.178 Atomic orbital electron populations 1.21921 0.81267 0.99445 1.01641 1.43599 1.05403 1.04640 1.62075 1.19708 0.97464 0.83007 1.43744 0.88062 1.25263 0.96523 0.99832 0.95481 1.70052 1.18115 1.28800 1.34516 0.85979 0.79637 0.81396 0.78142 1.20433 1.21012 1.19310 1.19659 0.87597 0.84399 0.84162 1.90516 1.14073 1.86867 1.55643 1.19755 0.95177 0.96323 0.92913 1.22197 0.99934 1.02177 0.96417 1.21569 0.97852 0.94824 1.03059 1.19679 0.95539 0.93796 0.95434 1.21636 0.98716 0.99104 0.92367 1.21095 0.95923 0.97150 0.98314 1.20969 1.00107 0.94867 0.97844 1.20794 0.96579 0.92008 0.96885 1.98344 1.62971 1.45710 1.98437 1.20800 0.96261 0.98532 0.96976 0.92337 0.91541 0.94017 0.92255 0.92644 0.91845 0.90263 0.92039 0.91832 0.92988 0.84180 0.85172 0.85400 0.85069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.20 6.16 59.85 0.37 2.57 16 2 N -0.44 -10.78 2.34 -122.19 -0.29 -11.07 16 3 C -0.31 -8.44 9.36 -14.93 -0.14 -8.58 16 4 H 0.10 2.90 7.34 -52.49 -0.39 2.51 16 5 C 0.03 0.84 4.99 -17.47 -0.09 0.76 16 6 N -0.88 -22.82 10.72 55.50 0.60 -22.23 16 7 Si 0.92 20.35 29.59 -169.99 -5.03 15.32 16 8 H -0.28 -6.03 7.11 56.52 0.40 -5.62 16 9 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 10 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 11 C 0.45 10.69 4.86 -10.98 -0.05 10.64 16 12 O -0.59 -15.86 15.63 5.55 0.09 -15.77 16 13 C -0.04 -0.70 0.59 -156.81 -0.09 -0.79 16 14 C -0.15 -2.49 7.62 37.16 0.28 -2.21 16 15 C -0.12 -1.92 7.65 37.16 0.28 -1.64 16 16 C -0.04 -0.72 3.19 -104.63 -0.33 -1.06 16 17 C -0.10 -1.72 7.19 -39.58 -0.28 -2.00 16 18 C -0.11 -1.51 10.05 -39.59 -0.40 -1.91 16 19 C -0.12 -1.55 9.83 -39.55 -0.39 -1.93 16 20 C -0.04 -0.49 6.32 -39.50 -0.25 -0.74 16 21 Cl -0.08 -0.99 28.96 -51.86 -1.50 -2.49 16 22 C -0.11 -1.53 8.60 -39.55 -0.34 -1.87 16 23 H 0.06 1.33 6.55 -51.93 -0.34 0.99 16 24 H 0.07 1.55 6.93 -51.93 -0.36 1.19 16 25 H 0.04 0.80 3.42 -51.93 -0.18 0.62 16 26 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 27 H 0.05 0.74 7.39 -51.93 -0.38 0.36 16 28 H 0.06 1.11 8.12 -51.93 -0.42 0.69 16 29 H 0.08 1.36 4.42 -51.93 -0.23 1.14 16 30 H 0.06 1.08 8.02 -51.93 -0.42 0.67 16 31 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 32 H 0.05 0.70 7.77 -51.93 -0.40 0.30 16 33 H 0.14 2.81 5.91 -52.49 -0.31 2.50 16 34 H 0.13 1.57 8.06 -52.48 -0.42 1.15 16 35 H 0.13 1.36 8.06 -52.48 -0.42 0.94 16 36 H 0.13 1.67 7.24 -52.49 -0.38 1.29 16 LS Contribution 300.62 15.07 4.53 4.53 Total: -1.00 -28.98 300.62 -7.25 -36.22 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -4.21 Total: 4.25 kcal Atomic # 6 Polarization: -7.33 SS G_CDS: -1.43 Total: -8.76 kcal Atomic # 7 Polarization: -33.60 SS G_CDS: 0.31 Total: -33.29 kcal Atomic # 8 Polarization: -15.86 SS G_CDS: 0.09 Total: -15.77 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.03 Total: 15.32 kcal Atomic # 17 Polarization: -0.99 SS G_CDS: -1.50 Total: -2.49 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -28.98 -7.25 -36.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076587552.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.631 kcal (2) G-P(sol) polarization free energy of solvation -28.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds