Wall clock time and date at job start Tue Mar 31 2020 05:26:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31224 * 124.07306 * 2 1 4 4 N 1.27323 * 120.05538 * 180.31934 * 3 2 1 5 5 S 1.56641 * 109.76177 * 359.72893 * 4 3 2 6 6 C 1.38361 * 124.06434 * 179.83840 * 2 1 3 7 7 C 1.47033 * 128.48487 * 0.02562 * 6 2 1 8 8 O 1.21660 * 119.99841 * 352.50660 * 7 6 2 9 9 N 1.34778 * 119.99863 * 172.78998 * 7 6 2 10 10 C 1.36838 * 120.00495 * 354.51418 * 9 7 6 11 11 H 1.08003 * 119.99952 * 119.07015 * 10 9 7 12 12 C 1.39048 * 119.99977 * 299.08285 * 10 9 7 13 13 N 1.31360 * 120.00351 * 352.78489 * 12 10 9 14 14 Si 1.86803 * 120.00127 * 172.78604 * 12 10 9 15 15 H 1.48497 * 109.47501 * 89.99845 * 14 12 10 16 16 H 1.48508 * 109.47175 * 210.00046 * 14 12 10 17 17 H 1.48503 * 109.46792 * 329.99551 * 14 12 10 18 18 C 1.46506 * 119.99589 * 174.51942 * 9 7 6 19 19 C 1.54272 * 110.03080 * 237.90551 * 18 9 7 20 20 C 1.54962 * 104.15506 * 217.13888 * 19 18 9 21 21 C 1.54880 * 102.78319 * 37.88885 * 20 19 18 22 22 C 1.53877 * 110.03090 * 120.68736 * 18 9 7 23 23 H 1.09000 * 109.47477 * 270.16352 * 1 2 3 24 24 H 1.08998 * 109.47181 * 30.16309 * 1 2 3 25 25 H 1.09000 * 109.47160 * 150.16231 * 1 2 3 26 26 H 0.96997 * 120.00939 * 185.03227 * 13 12 10 27 27 H 1.08995 * 110.01706 * 359.29223 * 18 9 7 28 28 H 1.08998 * 110.48137 * 335.78395 * 19 18 9 29 29 H 1.09001 * 110.48385 * 98.42655 * 19 18 9 30 30 H 1.08996 * 110.71729 * 279.57043 * 20 19 18 31 31 H 1.09003 * 110.91599 * 156.29754 * 20 19 18 32 32 H 1.08998 * 110.48905 * 203.40619 * 21 20 19 33 33 H 1.09002 * 110.60068 * 80.81380 * 21 20 19 34 34 H 1.08999 * 110.03128 * 238.56306 * 22 18 9 35 35 H 1.09001 * 110.03127 * 0.02562 * 22 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2421 1.0870 0.0000 4 7 3.5122 0.9978 -0.0061 5 16 3.9373 -0.5099 -0.0058 6 6 2.2820 -1.1462 0.0032 7 6 1.8410 -2.5488 0.0067 8 8 0.6620 -2.8155 0.1443 9 7 2.7437 -3.5393 -0.1369 10 6 4.0530 -3.2394 -0.3980 11 1 4.8245 -3.5398 0.2955 12 6 4.3902 -2.5475 -1.5561 13 7 3.4750 -2.3060 -2.4669 14 14 6.1447 -1.9615 -1.8166 15 1 6.9199 -3.0161 -2.5181 16 1 6.1365 -0.7242 -2.6379 17 1 6.7724 -1.6782 -0.5010 18 6 2.3230 -4.9373 -0.0136 19 6 3.1263 -5.6342 1.1039 20 6 3.3608 -7.0678 0.5644 21 6 3.6097 -6.8293 -0.9456 22 6 2.6298 -5.6969 -1.3162 23 1 -0.3634 0.0029 1.0276 24 1 -0.3633 0.8885 -0.5164 25 1 -0.3633 -0.8914 -0.5113 26 1 3.7243 -1.8886 -3.3063 27 1 1.2566 -4.9880 0.2059 28 1 4.0775 -5.1264 1.2634 29 1 2.5485 -5.6631 2.0278 30 1 2.4767 -7.6868 0.7172 31 1 4.2341 -7.5219 1.0328 32 1 3.3848 -7.7303 -1.5163 33 1 4.6389 -6.5154 -1.1197 34 1 1.7123 -6.1170 -1.7283 35 1 3.0921 -5.0255 -2.0399 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087428423.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:26 Heat of formation + Delta-G solvation = 25.863458 kcal Electronic energy + Delta-G solvation = -20922.888984 eV Core-core repulsion = 17855.148643 eV Total energy + Delta-G solvation = -3067.740342 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.78255 -39.01820 -36.74386 -34.48323 -32.29692 -31.70044 -28.18002 -28.05201 -26.65691 -25.94157 -24.95661 -21.73604 -20.25573 -19.50237 -19.29980 -17.53990 -16.82354 -15.70969 -15.68055 -14.95242 -14.81628 -14.58005 -14.07342 -13.55804 -13.13713 -12.80523 -12.71225 -12.38437 -12.25124 -11.82868 -11.70673 -11.55669 -11.36872 -11.03176 -10.84364 -10.66428 -10.59495 -10.45352 -10.41422 -10.02409 -9.80729 -9.64768 -9.04532 -8.77319 -8.61794 -8.19578 -7.45348 -6.76965 -4.69207 0.90686 2.05423 2.73061 2.98856 3.00894 3.02213 3.05642 3.74792 4.19468 4.44574 4.57012 4.95524 5.22763 5.28555 5.45944 5.66009 5.98298 6.05232 6.12309 6.13237 6.18410 6.20234 6.26462 6.31063 6.37605 6.41080 6.44286 6.62714 6.82287 6.86319 6.95364 7.07348 7.16582 7.72322 8.27121 8.48591 8.74826 9.19412 9.63724 10.23972 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.017991 B = 0.009345 C = 0.006968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.937743 B = 2995.414900 C = 4017.199343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.046 3.954 3 N -0.273 5.273 4 N -0.355 5.355 5 S 0.463 5.537 6 C -0.214 4.214 7 C 0.591 3.409 8 O -0.583 6.583 9 N -0.440 5.440 10 C -0.336 4.336 11 H 0.096 0.904 12 C 0.056 3.944 13 N -0.837 5.837 14 Si 0.873 3.127 15 H -0.258 1.258 16 H -0.269 1.269 17 H -0.246 1.246 18 C 0.140 3.860 19 C -0.129 4.129 20 C -0.120 4.120 21 C -0.117 4.117 22 C -0.125 4.125 23 H 0.072 0.928 24 H 0.066 0.934 25 H 0.091 0.909 26 H 0.280 0.720 27 H 0.082 0.918 28 H 0.078 0.922 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.052 0.948 33 H 0.065 0.935 34 H 0.049 0.951 35 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.850 -4.833 2.913 5.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.101 4.101 3 N -0.139 5.139 4 N -0.332 5.332 5 S 0.608 5.392 6 C -0.355 4.355 7 C 0.380 3.620 8 O -0.468 6.468 9 N -0.160 5.160 10 C -0.473 4.473 11 H 0.113 0.887 12 C -0.158 4.158 13 N -0.470 5.470 14 Si 0.696 3.304 15 H -0.183 1.183 16 H -0.194 1.194 17 H -0.169 1.169 18 C 0.036 3.964 19 C -0.168 4.168 20 C -0.158 4.158 21 C -0.155 4.155 22 C -0.163 4.163 23 H 0.091 0.909 24 H 0.085 0.915 25 H 0.110 0.890 26 H 0.091 0.909 27 H 0.100 0.900 28 H 0.096 0.904 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.084 0.916 34 H 0.068 0.932 35 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.826 -3.504 2.842 5.323 hybrid contribution -0.342 -0.423 -0.610 0.818 sum 2.484 -3.927 2.231 5.155 Atomic orbital electron populations 1.20202 0.85448 1.03482 1.02748 1.22694 0.99366 0.86497 1.01508 1.70605 0.98053 1.28588 1.16625 1.78240 1.09164 1.24079 1.21726 1.83297 1.11568 0.95141 1.49199 1.27354 0.96985 0.99677 1.11472 1.16838 0.85338 0.82404 0.77462 1.90618 1.17131 1.83409 1.55658 1.43113 1.07703 1.02531 1.62648 1.19361 0.84036 1.37875 1.05999 0.88702 1.25732 0.99225 0.95804 0.95057 1.69855 1.33610 1.37251 1.06272 0.86566 0.82979 0.79927 0.80977 1.18329 1.19381 1.16945 1.21617 0.98410 0.82398 0.93993 1.22679 1.01331 0.95183 0.97577 1.22425 1.00381 0.96727 0.96305 1.22273 1.00196 0.97707 0.95313 1.22374 0.98165 0.97010 0.98777 0.90947 0.91468 0.89001 0.90866 0.90025 0.90350 0.92606 0.92259 0.92305 0.92967 0.91615 0.93228 0.89066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.11 9.83 36.00 0.35 -0.75 16 2 C 0.05 1.05 7.00 -82.81 -0.58 0.47 16 3 N -0.27 -6.31 11.54 33.44 0.39 -5.93 16 4 N -0.36 -8.18 12.51 60.35 0.75 -7.42 16 5 S 0.46 10.22 15.89 -107.50 -1.71 8.51 16 6 C -0.21 -5.06 5.69 -35.97 -0.20 -5.26 16 7 C 0.59 14.40 6.99 -12.69 -0.09 14.31 16 8 O -0.58 -14.84 14.37 5.22 0.08 -14.76 16 9 N -0.44 -9.93 2.29 -107.89 -0.25 -10.17 16 10 C -0.34 -7.39 5.71 -15.02 -0.09 -7.48 16 11 H 0.10 1.98 6.86 -52.48 -0.36 1.63 16 12 C 0.06 1.27 2.76 -17.45 -0.05 1.22 16 13 N -0.84 -20.42 12.25 55.50 0.68 -19.74 16 14 Si 0.87 17.31 26.98 -169.99 -4.59 12.72 16 15 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 16 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 17 H -0.25 -4.56 7.11 56.52 0.40 -4.16 16 18 C 0.14 2.77 3.29 -66.80 -0.22 2.56 16 19 C -0.13 -2.14 6.42 -25.03 -0.16 -2.30 16 20 C -0.12 -1.69 6.91 -24.70 -0.17 -1.86 16 21 C -0.12 -1.79 6.83 -25.07 -0.17 -1.97 16 22 C -0.12 -2.33 6.28 -25.61 -0.16 -2.49 16 23 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 24 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 25 H 0.09 1.85 6.65 -51.93 -0.35 1.51 16 26 H 0.28 6.63 8.31 -40.82 -0.34 6.29 16 27 H 0.08 1.72 6.95 -51.93 -0.36 1.35 16 28 H 0.08 1.35 6.46 -51.93 -0.34 1.02 16 29 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.09 1.99 7.22 -51.93 -0.37 1.61 16 LS Contribution 292.44 15.07 4.41 4.41 Total: -1.00 -26.37 292.44 -6.07 -32.44 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -4.29 Total: 3.50 kcal Atomic # 6 Polarization: -2.03 SS G_CDS: -1.54 Total: -3.56 kcal Atomic # 7 Polarization: -44.83 SS G_CDS: 1.57 Total: -43.26 kcal Atomic # 8 Polarization: -14.84 SS G_CDS: 0.08 Total: -14.76 kcal Atomic # 14 Polarization: 17.31 SS G_CDS: -4.59 Total: 12.72 kcal Atomic # 16 Polarization: 10.22 SS G_CDS: -1.71 Total: 8.51 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -26.37 -6.07 -32.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087428423.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.305 kcal (2) G-P(sol) polarization free energy of solvation -26.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds