Wall clock time and date at job start Tue Mar 31 2020 05:26:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31224 * 124.07306 * 2 1 4 4 N 1.27323 * 120.05538 * 180.31934 * 3 2 1 5 5 S 1.56641 * 109.76177 * 359.72893 * 4 3 2 6 6 C 1.38361 * 124.06434 * 179.83840 * 2 1 3 7 7 C 1.47033 * 128.48487 * 0.02562 * 6 2 1 8 8 O 1.21660 * 119.99841 * 352.50660 * 7 6 2 9 9 N 1.34778 * 119.99863 * 172.78998 * 7 6 2 10 10 C 1.36838 * 120.00495 * 354.51418 * 9 7 6 11 11 H 1.08003 * 119.99952 * 119.07015 * 10 9 7 12 12 C 1.39048 * 119.99977 * 299.08285 * 10 9 7 13 13 N 1.31360 * 120.00351 * 352.78489 * 12 10 9 14 14 Si 1.86803 * 120.00127 * 172.78604 * 12 10 9 15 15 H 1.48497 * 109.47501 * 89.99845 * 14 12 10 16 16 H 1.48508 * 109.47175 * 210.00046 * 14 12 10 17 17 H 1.48503 * 109.46792 * 329.99551 * 14 12 10 18 18 C 1.46506 * 119.99589 * 174.51942 * 9 7 6 19 19 C 1.54272 * 110.03080 * 237.90551 * 18 9 7 20 20 C 1.54962 * 104.15506 * 217.13888 * 19 18 9 21 21 C 1.54880 * 102.78319 * 37.88885 * 20 19 18 22 22 C 1.53877 * 110.03090 * 120.68736 * 18 9 7 23 23 H 1.09000 * 109.47477 * 270.16352 * 1 2 3 24 24 H 1.08998 * 109.47181 * 30.16309 * 1 2 3 25 25 H 1.09000 * 109.47160 * 150.16231 * 1 2 3 26 26 H 0.96997 * 120.00939 * 185.03227 * 13 12 10 27 27 H 1.08995 * 110.01706 * 359.29223 * 18 9 7 28 28 H 1.08998 * 110.48137 * 335.78395 * 19 18 9 29 29 H 1.09001 * 110.48385 * 98.42655 * 19 18 9 30 30 H 1.08996 * 110.71729 * 279.57043 * 20 19 18 31 31 H 1.09003 * 110.91599 * 156.29754 * 20 19 18 32 32 H 1.08998 * 110.48905 * 203.40619 * 21 20 19 33 33 H 1.09002 * 110.60068 * 80.81380 * 21 20 19 34 34 H 1.08999 * 110.03128 * 238.56306 * 22 18 9 35 35 H 1.09001 * 110.03127 * 0.02562 * 22 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2421 1.0870 0.0000 4 7 3.5122 0.9978 -0.0061 5 16 3.9373 -0.5099 -0.0058 6 6 2.2820 -1.1462 0.0032 7 6 1.8410 -2.5488 0.0067 8 8 0.6620 -2.8155 0.1443 9 7 2.7437 -3.5393 -0.1369 10 6 4.0530 -3.2394 -0.3980 11 1 4.8245 -3.5398 0.2955 12 6 4.3902 -2.5475 -1.5561 13 7 3.4750 -2.3060 -2.4669 14 14 6.1447 -1.9615 -1.8166 15 1 6.9199 -3.0161 -2.5181 16 1 6.1365 -0.7242 -2.6379 17 1 6.7724 -1.6782 -0.5010 18 6 2.3230 -4.9373 -0.0136 19 6 3.1263 -5.6342 1.1039 20 6 3.3608 -7.0678 0.5644 21 6 3.6097 -6.8293 -0.9456 22 6 2.6298 -5.6969 -1.3162 23 1 -0.3634 0.0029 1.0276 24 1 -0.3633 0.8885 -0.5164 25 1 -0.3633 -0.8914 -0.5113 26 1 3.7243 -1.8886 -3.3063 27 1 1.2566 -4.9880 0.2059 28 1 4.0775 -5.1264 1.2634 29 1 2.5485 -5.6631 2.0278 30 1 2.4767 -7.6868 0.7172 31 1 4.2341 -7.5219 1.0328 32 1 3.3848 -7.7303 -1.5163 33 1 4.6389 -6.5154 -1.1197 34 1 1.7123 -6.1170 -1.7283 35 1 3.0921 -5.0255 -2.0399 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087428423.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:25 Heat of formation + Delta-G solvation = 10.659918 kcal Electronic energy + Delta-G solvation = -20923.548259 eV Core-core repulsion = 17855.148643 eV Total energy + Delta-G solvation = -3068.399617 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.55065 -40.71652 -38.31724 -36.19541 -33.98057 -33.45418 -29.77351 -29.40827 -28.24634 -27.68120 -26.67852 -23.47116 -21.63617 -21.08345 -20.94513 -19.28583 -18.52973 -17.43105 -17.30111 -16.71393 -16.52675 -15.97601 -15.62551 -15.27883 -14.80065 -14.43804 -14.13549 -13.93002 -13.84450 -13.44752 -13.39011 -13.25288 -13.01555 -12.52910 -12.34374 -12.25055 -12.10813 -11.79587 -11.78504 -11.40321 -11.31214 -11.22447 -10.84081 -10.58696 -10.39211 -9.98065 -9.20675 -8.52601 -6.48881 -0.89461 0.29804 0.96552 1.21433 1.39357 1.42770 1.48523 2.09109 2.38451 2.75352 2.82001 3.24090 3.89682 3.95917 3.96531 4.18133 4.33569 4.57026 4.69046 4.72771 4.73921 4.81947 4.83473 4.85157 4.97213 5.14693 5.22466 5.25607 5.27232 5.32756 5.49392 5.58445 5.63125 6.01509 6.49628 6.72823 6.96303 7.38312 7.85300 8.48358 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.017991 B = 0.009345 C = 0.006968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.937743 B = 2995.414900 C = 4017.199343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C 0.042 3.958 3 N -0.283 5.283 4 N -0.367 5.367 5 S 0.493 5.507 6 C -0.243 4.243 7 C 0.575 3.425 8 O -0.608 6.608 9 N -0.441 5.441 10 C -0.334 4.334 11 H 0.110 0.890 12 C 0.031 3.969 13 N -0.871 5.871 14 Si 0.903 3.097 15 H -0.246 1.246 16 H -0.281 1.281 17 H -0.221 1.221 18 C 0.129 3.871 19 C -0.124 4.124 20 C -0.109 4.109 21 C -0.110 4.110 22 C -0.122 4.122 23 H 0.091 0.909 24 H 0.089 0.911 25 H 0.076 0.924 26 H 0.277 0.723 27 H 0.063 0.937 28 H 0.072 0.928 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.061 0.939 34 H 0.050 0.950 35 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.135 -5.979 3.712 7.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.106 4.106 3 N -0.148 5.148 4 N -0.344 5.344 5 S 0.638 5.362 6 C -0.383 4.383 7 C 0.364 3.636 8 O -0.495 6.495 9 N -0.160 5.160 10 C -0.471 4.471 11 H 0.128 0.872 12 C -0.181 4.181 13 N -0.504 5.504 14 Si 0.723 3.277 15 H -0.170 1.170 16 H -0.207 1.207 17 H -0.143 1.143 18 C 0.025 3.975 19 C -0.162 4.162 20 C -0.146 4.146 21 C -0.148 4.148 22 C -0.161 4.161 23 H 0.110 0.890 24 H 0.108 0.892 25 H 0.094 0.906 26 H 0.087 0.913 27 H 0.081 0.919 28 H 0.091 0.909 29 H 0.082 0.918 30 H 0.092 0.908 31 H 0.102 0.898 32 H 0.093 0.907 33 H 0.080 0.920 34 H 0.069 0.931 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.135 -4.671 3.660 7.233 hybrid contribution -0.765 -0.099 -0.885 1.174 sum 3.370 -4.770 2.776 6.467 Atomic orbital electron populations 1.20265 0.83360 1.03732 1.04085 1.23223 1.00830 0.86066 1.00453 1.70630 0.98083 1.28835 1.17285 1.78152 1.09421 1.24870 1.22001 1.82985 1.10688 0.94286 1.48235 1.27501 0.98178 0.99830 1.12793 1.17131 0.85496 0.83088 0.77916 1.90580 1.17908 1.83851 1.57146 1.43349 1.07790 1.03353 1.61472 1.19680 0.84017 1.37310 1.06059 0.87234 1.26253 1.01679 0.95499 0.94646 1.69968 1.35329 1.38428 1.06705 0.86077 0.80161 0.79366 0.82059 1.16969 1.20690 1.14333 1.21871 0.98058 0.81477 0.96057 1.22636 1.00379 0.96487 0.96707 1.22403 1.02208 0.95124 0.94912 1.22232 0.98784 0.97043 0.96707 1.22303 0.98975 0.97530 0.97283 0.89004 0.89207 0.90571 0.91287 0.91905 0.90897 0.91775 0.90765 0.89765 0.90724 0.91997 0.93109 0.92488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -2.03 9.83 71.23 0.70 -1.33 16 2 C 0.04 1.88 7.00 42.68 0.30 2.17 16 3 N -0.28 -12.95 11.54 -48.12 -0.56 -13.51 16 4 N -0.37 -16.68 12.51 37.02 0.46 -16.22 16 5 S 0.49 21.42 15.89 -56.49 -0.90 20.52 16 6 C -0.24 -11.50 5.69 24.61 0.14 -11.36 16 7 C 0.58 28.43 6.99 86.55 0.60 29.04 16 8 O -0.61 -31.68 14.37 -4.22 -0.06 -31.74 16 9 N -0.44 -19.94 2.29 -613.48 -1.41 -21.34 16 10 C -0.33 -14.45 5.71 84.11 0.48 -13.97 16 11 H 0.11 4.38 6.86 -2.91 -0.02 4.36 16 12 C 0.03 1.36 2.76 84.96 0.23 1.60 16 13 N -0.87 -42.97 12.25 21.68 0.27 -42.71 16 14 Si 0.90 33.88 26.98 68.60 1.85 35.73 16 15 H -0.25 -8.74 7.11 99.48 0.71 -8.03 16 16 H -0.28 -11.16 7.11 99.48 0.71 -10.45 16 17 H -0.22 -7.40 7.11 99.48 0.71 -6.69 16 18 C 0.13 5.08 3.29 45.72 0.15 5.23 16 19 C -0.12 -3.86 6.42 31.70 0.20 -3.66 16 20 C -0.11 -2.68 6.91 31.91 0.22 -2.46 16 21 C -0.11 -3.09 6.83 31.67 0.22 -2.88 16 22 C -0.12 -4.51 6.28 31.32 0.20 -4.32 16 23 H 0.09 3.05 8.14 -2.39 -0.02 3.03 16 24 H 0.09 2.90 8.14 -2.39 -0.02 2.88 16 25 H 0.08 3.11 6.65 -2.39 -0.02 3.09 16 26 H 0.28 13.34 8.31 -92.71 -0.77 12.57 16 27 H 0.06 2.69 6.95 -2.39 -0.02 2.67 16 28 H 0.07 2.35 6.46 -2.39 -0.02 2.34 16 29 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.06 2.50 7.22 -2.39 -0.02 2.49 16 Total: -1.00 -56.66 292.44 4.21 -52.44 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: 1.11 Total: 18.75 kcal Atomic # 6 Polarization: -5.38 SS G_CDS: 3.45 Total: -1.93 kcal Atomic # 7 Polarization: -92.54 SS G_CDS: -1.23 Total: -93.77 kcal Atomic # 8 Polarization: -31.68 SS G_CDS: -0.06 Total: -31.74 kcal Atomic # 14 Polarization: 33.88 SS G_CDS: 1.85 Total: 35.73 kcal Atomic # 16 Polarization: 21.42 SS G_CDS: -0.90 Total: 20.52 kcal Total: -56.66 4.21 -52.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087428423.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.105 kcal (2) G-P(sol) polarization free energy of solvation -56.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds