Wall clock time and date at job start Tue Mar 31 2020 05:25:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.33326 * 122.71161 * 2 1 4 4 S 1.76168 * 108.09558 * 179.78927 * 3 2 1 5 5 C 1.70959 * 90.35680 * 0.30437 * 4 3 2 6 6 N 1.38613 * 124.94988 * 179.97438 * 5 4 3 7 7 C 1.46901 * 110.99712 * 359.69052 * 6 5 4 8 8 C 1.53241 * 109.35738 * 172.76220 * 7 6 5 9 9 N 1.47072 * 108.52062 * 53.81795 * 8 7 6 10 10 C 1.34782 * 120.87917 * 128.79241 * 9 8 7 11 11 O 1.21688 * 120.00189 * 354.76630 * 10 9 8 12 12 C 1.46378 * 120.00143 * 174.76285 * 10 9 8 13 13 H 1.08003 * 119.99445 * 5.00238 * 12 10 9 14 14 C 1.40045 * 120.00195 * 185.00102 * 12 10 9 15 15 N 1.30665 * 119.99890 * 0.02562 * 14 12 10 16 16 Si 1.86805 * 120.00097 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.46832 * 359.97438 * 16 14 12 18 18 H 1.48491 * 109.47056 * 119.99896 * 16 14 12 19 19 H 1.48494 * 109.47009 * 240.00279 * 16 14 12 20 20 C 1.47077 * 118.24263 * 308.80934 * 9 8 7 21 21 C 1.46902 * 111.01643 * 235.37401 * 6 5 4 22 22 N 1.29693 * 110.10097 * 359.69001 * 5 4 3 23 23 H 1.09001 * 109.46614 * 269.97539 * 1 2 3 24 24 H 1.08999 * 109.46677 * 29.97340 * 1 2 3 25 25 H 1.08993 * 109.47062 * 149.97996 * 1 2 3 26 26 H 1.07997 * 125.95150 * 0.02562 * 3 2 1 27 27 H 1.08998 * 109.48956 * 52.78870 * 7 6 5 28 28 H 1.08991 * 109.49614 * 292.73489 * 7 6 5 29 29 H 1.08999 * 109.62545 * 173.53142 * 8 7 6 30 30 H 1.09006 * 109.62878 * 294.10682 * 8 7 6 31 31 H 0.97001 * 119.99986 * 180.02562 * 15 14 12 32 32 H 1.09000 * 109.63030 * 170.89311 * 20 9 8 33 33 H 1.09000 * 109.63323 * 291.48049 * 20 9 8 34 34 H 1.08995 * 109.46806 * 67.26863 * 21 6 5 35 35 H 1.08992 * 109.51543 * 307.20957 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2276 1.1218 0.0000 4 16 3.9322 0.6773 0.0062 5 6 3.5112 -0.9796 -0.0009 6 7 4.4167 -2.0291 -0.0007 7 6 5.7989 -1.5316 -0.0010 8 6 6.7626 -2.7091 0.1814 9 7 6.4651 -3.7195 -0.8450 10 6 7.4426 -4.2208 -1.6260 11 8 8.5708 -3.7706 -1.5530 12 6 7.1471 -5.3068 -2.5619 13 1 6.1311 -5.6517 -2.6854 14 6 8.1818 -5.8986 -3.2971 15 7 9.4110 -5.4816 -3.1472 16 14 7.8046 -7.2840 -4.4920 17 1 6.3470 -7.5679 -4.4765 18 1 8.2167 -6.8829 -5.8610 19 1 8.5501 -8.5030 -4.0878 20 6 5.0727 -4.1682 -0.9970 21 6 4.1755 -2.9333 -1.1331 22 7 2.2210 -1.1117 -0.0005 23 1 -0.3632 -0.0004 1.0277 24 1 -0.3632 0.8902 -0.5134 25 1 -0.3633 -0.8897 -0.5141 26 1 1.8346 2.1278 0.0004 27 1 5.9307 -0.8235 0.8171 28 1 6.0067 -1.0351 -0.9487 29 1 7.7897 -2.3626 0.0674 30 1 6.6274 -3.1428 1.1723 31 1 10.1276 -5.8912 -3.6568 32 1 4.9826 -4.7863 -1.8903 33 1 4.7750 -4.7422 -0.1195 34 1 4.4055 -2.4175 -2.0653 35 1 3.1302 -3.2418 -1.1364 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153572459.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:22 Heat of formation + Delta-G solvation = 27.594931 kcal Electronic energy + Delta-G solvation = -19667.811128 eV Core-core repulsion = 16600.145869 eV Total energy + Delta-G solvation = -3067.665260 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.17212 -38.77432 -36.71140 -33.71613 -32.57773 -31.35188 -30.74868 -27.72332 -27.32531 -25.92614 -23.54195 -23.08416 -21.07552 -19.49453 -19.09392 -18.03377 -16.80646 -16.18279 -15.51428 -15.29801 -14.78594 -14.57405 -14.36474 -14.21037 -13.91841 -13.76051 -13.10011 -12.70514 -12.62630 -12.52590 -11.98969 -11.62067 -11.43913 -11.34128 -11.09036 -11.01410 -10.93392 -10.80586 -10.29451 -10.12564 -10.08324 -9.50097 -9.11480 -8.92968 -8.02942 -7.68951 -7.37253 -6.27493 -4.72942 0.78337 1.26587 1.75906 2.77136 3.08930 3.17605 3.21410 3.33106 4.02214 4.40955 4.47738 4.53510 5.03323 5.12481 5.18866 5.23223 5.36702 5.44666 5.47589 5.57261 5.59044 5.68614 5.74430 5.86850 6.00218 6.16740 6.30448 6.35364 6.52559 6.65287 6.84230 7.38232 7.44623 7.86257 8.02177 8.24592 8.94824 9.31037 10.47991 10.66685 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.031796 B = 0.004114 C = 0.003804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.404404 B = 6804.315990 C = 7357.994703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.093 3.907 3 C -0.293 4.293 4 S 0.081 5.919 5 C 0.253 3.747 6 N -0.438 5.438 7 C 0.032 3.968 8 C 0.129 3.871 9 N -0.646 5.646 10 C 0.559 3.441 11 O -0.576 6.576 12 C -0.544 4.544 13 H 0.074 0.926 14 C 0.088 3.912 15 N -0.766 5.766 16 Si 0.907 3.093 17 H -0.263 1.263 18 H -0.276 1.276 19 H -0.275 1.275 20 C 0.127 3.873 21 C 0.050 3.950 22 N -0.507 5.507 23 H 0.074 0.926 24 H 0.072 0.928 25 H 0.075 0.925 26 H 0.171 0.829 27 H 0.086 0.914 28 H 0.059 0.941 29 H 0.098 0.902 30 H 0.056 0.944 31 H 0.269 0.731 32 H 0.104 0.896 33 H 0.056 0.944 34 H 0.051 0.949 35 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.063 9.950 4.768 17.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.039 4.039 3 C -0.433 4.433 4 S 0.332 5.668 5 C -0.118 4.118 6 N -0.158 5.158 7 C -0.096 4.096 8 C 0.004 3.996 9 N -0.385 5.385 10 C 0.366 3.634 11 O -0.458 6.458 12 C -0.580 4.580 13 H 0.092 0.908 14 C -0.132 4.132 15 N -0.395 5.395 16 Si 0.732 3.268 17 H -0.187 1.187 18 H -0.201 1.201 19 H -0.201 1.201 20 C 0.002 3.998 21 C -0.078 4.078 22 N -0.228 5.228 23 H 0.093 0.907 24 H 0.091 0.909 25 H 0.094 0.906 26 H 0.189 0.811 27 H 0.104 0.896 28 H 0.078 0.922 29 H 0.116 0.884 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.122 0.878 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -12.482 9.857 5.173 16.725 hybrid contribution -1.088 -0.165 -1.010 1.494 sum -13.570 9.692 4.162 17.187 Atomic orbital electron populations 1.20343 0.87316 1.03178 1.02806 1.20059 0.97828 0.86235 0.99794 1.26384 0.94607 1.03535 1.18797 1.84195 1.08128 1.03260 1.71214 1.25527 0.92618 0.93571 1.00037 1.58322 1.02712 1.12404 1.42316 1.22929 0.85349 0.99199 1.02139 1.21186 0.98328 0.87745 0.92358 1.48345 1.07669 1.44056 1.38461 1.18293 0.82699 0.82714 0.79729 1.90597 1.21509 1.62884 1.70836 1.20996 0.94892 1.18218 1.23897 0.90795 1.25729 0.94469 0.96835 0.96197 1.70014 1.00007 1.35683 1.33775 0.86319 0.79525 0.80861 0.80133 1.18655 1.20129 1.20090 1.21576 0.81690 0.93647 1.02896 1.22834 1.01937 0.93978 0.89016 1.66295 1.02971 1.31212 1.22287 0.90734 0.90868 0.90596 0.81121 0.89589 0.92237 0.88424 0.92554 0.92036 0.87774 0.92535 0.93058 0.88700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.69 10.31 36.01 0.37 -0.32 16 2 C 0.09 1.18 6.74 -84.18 -0.57 0.62 16 3 C -0.29 -3.37 11.10 29.02 0.32 -3.05 16 4 S 0.08 1.03 21.15 -107.50 -2.27 -1.24 16 5 C 0.25 3.87 6.81 -87.67 -0.60 3.27 16 6 N -0.44 -7.05 4.69 -175.08 -0.82 -7.87 16 7 C 0.03 0.51 4.67 -3.70 -0.02 0.49 16 8 C 0.13 2.43 6.61 -3.61 -0.02 2.40 16 9 N -0.65 -14.24 3.01 -174.12 -0.52 -14.76 16 10 C 0.56 15.40 7.63 -12.98 -0.10 15.30 16 11 O -0.58 -18.06 14.49 5.20 0.08 -17.98 16 12 C -0.54 -14.74 8.85 -35.63 -0.32 -15.05 16 13 H 0.07 1.82 5.74 -52.48 -0.30 1.51 16 14 C 0.09 2.38 5.50 -17.37 -0.10 2.28 16 15 N -0.77 -22.40 11.84 55.55 0.66 -21.74 16 16 Si 0.91 19.55 29.56 -169.99 -5.02 14.53 16 17 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 18 H -0.28 -5.87 7.11 56.52 0.40 -5.46 16 19 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 20 C 0.13 2.32 6.47 -3.60 -0.02 2.30 16 21 C 0.05 0.82 5.54 -3.70 -0.02 0.80 16 22 N -0.51 -7.81 10.17 -11.36 -0.12 -7.92 16 23 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.07 0.50 8.12 -51.93 -0.42 0.08 16 25 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.17 1.46 8.06 -52.49 -0.42 1.04 16 27 H 0.09 1.17 7.37 -51.93 -0.38 0.79 16 28 H 0.06 0.99 8.07 -51.93 -0.42 0.57 16 29 H 0.10 2.00 7.04 -51.93 -0.37 1.63 16 30 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.27 7.12 8.29 -40.82 -0.34 6.78 16 32 H 0.10 1.94 5.47 -51.93 -0.28 1.66 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.09 1.45 7.78 -51.93 -0.40 1.05 16 LS Contribution 303.09 15.07 4.57 4.57 Total: -1.00 -33.41 303.09 -8.77 -42.18 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: -4.25 Total: 1.19 kcal Atomic # 6 Polarization: 10.11 SS G_CDS: -1.07 Total: 9.05 kcal Atomic # 7 Polarization: -51.49 SS G_CDS: -0.80 Total: -52.30 kcal Atomic # 8 Polarization: -18.06 SS G_CDS: 0.08 Total: -17.98 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -5.02 Total: 14.53 kcal Atomic # 16 Polarization: 1.03 SS G_CDS: -2.27 Total: -1.24 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -33.41 -8.77 -42.18 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153572459.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.779 kcal (2) G-P(sol) polarization free energy of solvation -33.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds