Wall clock time and date at job start Tue Mar 31 2020 05:25:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.33326 * 122.71161 * 2 1 4 4 S 1.76168 * 108.09558 * 179.78927 * 3 2 1 5 5 C 1.70959 * 90.35680 * 0.30437 * 4 3 2 6 6 N 1.38613 * 124.94988 * 179.97438 * 5 4 3 7 7 C 1.46901 * 110.99712 * 359.69052 * 6 5 4 8 8 C 1.53241 * 109.35738 * 172.76220 * 7 6 5 9 9 N 1.47072 * 108.52062 * 53.81795 * 8 7 6 10 10 C 1.34782 * 120.87917 * 128.79241 * 9 8 7 11 11 O 1.21688 * 120.00189 * 354.76630 * 10 9 8 12 12 C 1.46378 * 120.00143 * 174.76285 * 10 9 8 13 13 H 1.08003 * 119.99445 * 5.00238 * 12 10 9 14 14 C 1.40045 * 120.00195 * 185.00102 * 12 10 9 15 15 N 1.30665 * 119.99890 * 0.02562 * 14 12 10 16 16 Si 1.86805 * 120.00097 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.46832 * 359.97438 * 16 14 12 18 18 H 1.48491 * 109.47056 * 119.99896 * 16 14 12 19 19 H 1.48494 * 109.47009 * 240.00279 * 16 14 12 20 20 C 1.47077 * 118.24263 * 308.80934 * 9 8 7 21 21 C 1.46902 * 111.01643 * 235.37401 * 6 5 4 22 22 N 1.29693 * 110.10097 * 359.69001 * 5 4 3 23 23 H 1.09001 * 109.46614 * 269.97539 * 1 2 3 24 24 H 1.08999 * 109.46677 * 29.97340 * 1 2 3 25 25 H 1.08993 * 109.47062 * 149.97996 * 1 2 3 26 26 H 1.07997 * 125.95150 * 0.02562 * 3 2 1 27 27 H 1.08998 * 109.48956 * 52.78870 * 7 6 5 28 28 H 1.08991 * 109.49614 * 292.73489 * 7 6 5 29 29 H 1.08999 * 109.62545 * 173.53142 * 8 7 6 30 30 H 1.09006 * 109.62878 * 294.10682 * 8 7 6 31 31 H 0.97001 * 119.99986 * 180.02562 * 15 14 12 32 32 H 1.09000 * 109.63030 * 170.89311 * 20 9 8 33 33 H 1.09000 * 109.63323 * 291.48049 * 20 9 8 34 34 H 1.08995 * 109.46806 * 67.26863 * 21 6 5 35 35 H 1.08992 * 109.51543 * 307.20957 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2276 1.1218 0.0000 4 16 3.9322 0.6773 0.0062 5 6 3.5112 -0.9796 -0.0009 6 7 4.4167 -2.0291 -0.0007 7 6 5.7989 -1.5316 -0.0010 8 6 6.7626 -2.7091 0.1814 9 7 6.4651 -3.7195 -0.8450 10 6 7.4426 -4.2208 -1.6260 11 8 8.5708 -3.7706 -1.5530 12 6 7.1471 -5.3068 -2.5619 13 1 6.1311 -5.6517 -2.6854 14 6 8.1818 -5.8986 -3.2971 15 7 9.4110 -5.4816 -3.1472 16 14 7.8046 -7.2840 -4.4920 17 1 6.3470 -7.5679 -4.4765 18 1 8.2167 -6.8829 -5.8610 19 1 8.5501 -8.5030 -4.0878 20 6 5.0727 -4.1682 -0.9970 21 6 4.1755 -2.9333 -1.1331 22 7 2.2210 -1.1117 -0.0005 23 1 -0.3632 -0.0004 1.0277 24 1 -0.3632 0.8902 -0.5134 25 1 -0.3633 -0.8897 -0.5141 26 1 1.8346 2.1278 0.0004 27 1 5.9307 -0.8235 0.8171 28 1 6.0067 -1.0351 -0.9487 29 1 7.7897 -2.3626 0.0674 30 1 6.6274 -3.1428 1.1723 31 1 10.1276 -5.8912 -3.6568 32 1 4.9826 -4.7863 -1.8903 33 1 4.7750 -4.7422 -0.1195 34 1 4.4055 -2.4175 -2.0653 35 1 3.1302 -3.2418 -1.1364 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153572459.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:22 Heat of formation + Delta-G solvation = 4.113624 kcal Electronic energy + Delta-G solvation = -19668.829354 eV Core-core repulsion = 16600.145869 eV Total energy + Delta-G solvation = -3068.683485 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.34998 -40.19133 -38.46147 -35.38931 -34.63698 -32.59198 -32.00130 -29.19226 -28.44696 -27.65545 -24.98514 -24.32273 -22.66135 -20.92156 -20.38375 -19.25931 -18.43212 -17.82723 -17.10821 -16.51698 -16.32134 -15.96940 -15.91148 -15.78581 -15.03613 -14.98738 -14.47534 -14.17167 -13.70969 -13.57033 -13.29307 -13.22187 -13.08294 -12.89111 -12.76129 -12.41843 -12.34792 -12.14603 -12.03570 -11.93941 -11.20771 -10.95163 -10.57589 -10.16529 -9.82534 -9.25781 -9.05291 -8.30619 -6.85494 -0.24868 0.22941 0.78554 1.40486 1.41559 1.58743 1.75199 2.14252 2.25009 2.44571 2.75645 3.48255 3.54718 3.79787 3.85817 4.03340 4.15048 4.23743 4.31958 4.40677 4.45964 4.59738 4.70820 4.81889 4.82470 4.87786 4.92987 5.02563 5.32504 5.34151 5.40613 5.65299 5.69147 6.08712 6.32350 6.83615 6.87265 7.35067 8.42858 8.65246 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.031796 B = 0.004114 C = 0.003804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.404404 B = 6804.315990 C = 7357.994703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.069 3.931 3 C -0.276 4.276 4 S 0.099 5.901 5 C 0.221 3.779 6 N -0.445 5.445 7 C 0.047 3.953 8 C 0.127 3.873 9 N -0.649 5.649 10 C 0.543 3.457 11 O -0.628 6.628 12 C -0.567 4.567 13 H 0.095 0.905 14 C 0.030 3.970 15 N -0.821 5.821 16 Si 0.994 3.006 17 H -0.244 1.244 18 H -0.271 1.271 19 H -0.270 1.270 20 C 0.128 3.872 21 C 0.064 3.936 22 N -0.524 5.524 23 H 0.085 0.915 24 H 0.098 0.902 25 H 0.069 0.931 26 H 0.205 0.795 27 H 0.111 0.889 28 H 0.049 0.951 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.274 0.726 32 H 0.099 0.901 33 H 0.069 0.931 34 H 0.039 0.961 35 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.793 10.501 4.643 20.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.062 4.062 3 C -0.416 4.416 4 S 0.350 5.650 5 C -0.148 4.148 6 N -0.165 5.165 7 C -0.081 4.081 8 C 0.003 3.997 9 N -0.386 5.386 10 C 0.350 3.650 11 O -0.515 6.515 12 C -0.604 4.604 13 H 0.113 0.887 14 C -0.185 4.185 15 N -0.451 5.451 16 Si 0.814 3.186 17 H -0.167 1.167 18 H -0.196 1.196 19 H -0.194 1.194 20 C 0.004 3.996 21 C -0.065 4.065 22 N -0.246 5.246 23 H 0.103 0.897 24 H 0.117 0.883 25 H 0.088 0.912 26 H 0.222 0.778 27 H 0.129 0.871 28 H 0.067 0.933 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.117 0.883 33 H 0.087 0.913 34 H 0.058 0.942 35 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -15.290 10.435 5.085 19.197 hybrid contribution -0.335 -0.182 -0.891 0.969 sum -15.625 10.253 4.194 19.154 Atomic orbital electron populations 1.20447 0.84860 1.04181 1.03800 1.20630 0.99452 0.85819 1.00288 1.26855 0.93512 1.04856 1.16370 1.84128 1.09278 1.01215 1.70399 1.25448 0.92706 0.94443 1.02199 1.58261 1.02611 1.13303 1.42371 1.22712 0.84934 0.97868 1.02588 1.21266 0.98109 0.88289 0.92024 1.48177 1.08321 1.44119 1.37978 1.18655 0.82872 0.83027 0.80472 1.90547 1.23854 1.64518 1.72584 1.21529 0.96237 1.18391 1.24199 0.88672 1.26959 0.93874 0.99666 0.97986 1.70181 1.01588 1.37830 1.35458 0.85017 0.80237 0.76522 0.76867 1.16699 1.19558 1.19449 1.21678 0.79903 0.94826 1.03194 1.22620 1.01819 0.93088 0.88932 1.66302 1.03261 1.33069 1.21925 0.89672 0.88335 0.91162 0.77790 0.87096 0.93316 0.90742 0.91212 0.91578 0.88297 0.91251 0.94250 0.87423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.10 10.31 71.24 0.73 -0.36 16 2 C 0.07 1.58 6.74 41.41 0.28 1.85 16 3 C -0.28 -5.42 11.10 66.71 0.74 -4.68 16 4 S 0.10 2.32 21.15 -56.49 -1.19 1.12 16 5 C 0.22 6.45 6.81 179.32 1.22 7.67 16 6 N -0.45 -13.95 4.69 -707.84 -3.32 -17.27 16 7 C 0.05 1.49 4.67 86.38 0.40 1.89 16 8 C 0.13 4.91 6.61 86.35 0.57 5.48 16 9 N -0.65 -29.25 3.01 -823.01 -2.48 -31.73 16 10 C 0.54 31.03 7.63 86.36 0.66 31.69 16 11 O -0.63 -41.42 14.49 -4.31 -0.06 -41.48 16 12 C -0.57 -31.28 8.85 24.83 0.22 -31.06 16 13 H 0.10 4.65 5.74 -2.91 -0.02 4.64 16 14 C 0.03 1.66 5.50 85.30 0.47 2.13 16 15 N -0.82 -49.58 11.84 21.83 0.26 -49.32 16 16 Si 0.99 40.11 29.56 68.60 2.03 42.14 16 17 H -0.24 -9.01 7.11 99.48 0.71 -8.31 16 18 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 19 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16 20 C 0.13 4.65 6.47 86.35 0.56 5.21 16 21 C 0.06 2.04 5.54 86.39 0.48 2.52 16 22 N -0.52 -15.20 10.17 -189.86 -1.93 -17.13 16 23 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 24 H 0.10 0.95 8.12 -2.39 -0.02 0.93 16 25 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.21 2.52 8.06 -2.91 -0.02 2.50 16 27 H 0.11 2.90 7.37 -2.39 -0.02 2.88 16 28 H 0.05 1.63 8.07 -2.39 -0.02 1.61 16 29 H 0.07 3.22 7.04 -2.39 -0.02 3.20 16 30 H 0.07 2.48 8.14 -2.38 -0.02 2.47 16 31 H 0.27 14.99 8.29 -92.71 -0.77 14.22 16 32 H 0.10 3.67 5.47 -2.39 -0.01 3.66 16 33 H 0.07 2.35 8.14 -2.39 -0.02 2.34 16 34 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.11 3.17 7.78 -2.39 -0.02 3.16 16 Total: -1.00 -75.00 303.09 0.74 -74.26 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: 1.11 Total: 17.08 kcal Atomic # 6 Polarization: 16.01 SS G_CDS: 6.33 Total: 22.34 kcal Atomic # 7 Polarization: -107.98 SS G_CDS: -7.47 Total: -115.45 kcal Atomic # 8 Polarization: -41.42 SS G_CDS: -0.06 Total: -41.48 kcal Atomic # 14 Polarization: 40.11 SS G_CDS: 2.03 Total: 42.14 kcal Atomic # 16 Polarization: 2.32 SS G_CDS: -1.19 Total: 1.12 kcal Total: -75.00 0.74 -74.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153572459.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.374 kcal (2) G-P(sol) polarization free energy of solvation -75.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.260 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds