Wall clock time and date at job start Tue Mar 31 2020 05:14:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38312 * 119.93422 * 2 1 4 4 C 1.38371 * 120.31708 * 179.97438 * 3 2 1 5 5 C 1.37941 * 120.18654 * 0.04679 * 4 3 2 6 6 C 1.39594 * 119.85894 * 359.69634 * 5 4 3 7 7 C 1.47772 * 120.15523 * 180.27773 * 6 5 4 8 8 O 1.21555 * 120.00117 * 130.13383 * 7 6 5 9 9 N 1.34779 * 119.99984 * 310.13947 * 7 6 5 10 10 C 1.46504 * 120.00163 * 4.47118 * 9 7 6 11 11 C 1.46501 * 120.00000 * 184.47144 * 9 7 6 12 12 H 1.08998 * 109.46873 * 0.02562 * 11 9 7 13 13 C 1.53000 * 109.46779 * 119.99851 * 11 9 7 14 14 C 1.50699 * 109.47246 * 239.99598 * 11 9 7 15 15 H 1.08006 * 120.00035 * 0.02562 * 14 11 9 16 16 C 1.37877 * 120.00049 * 179.97438 * 14 11 9 17 17 N 1.31516 * 119.99763 * 359.97438 * 16 14 11 18 18 Si 1.86800 * 120.00019 * 180.02562 * 16 14 11 19 19 H 1.48508 * 109.46917 * 60.00248 * 18 16 14 20 20 H 1.48500 * 109.46964 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47262 * 300.00397 * 18 16 14 22 22 C 1.38108 * 119.93735 * 180.02562 * 2 1 3 23 23 Cl 1.73608 * 120.09092 * 0.02562 * 22 2 1 24 24 H 1.08994 * 109.47529 * 269.97499 * 1 2 3 25 25 H 1.09003 * 109.47085 * 29.97981 * 1 2 3 26 26 H 1.09003 * 109.46806 * 149.97764 * 1 2 3 27 27 H 1.08008 * 119.84168 * 359.97438 * 3 2 1 28 28 H 1.08006 * 119.90971 * 180.02562 * 4 3 2 29 29 H 1.07999 * 120.07429 * 179.97438 * 5 4 3 30 30 H 1.08993 * 109.47092 * 93.15135 * 10 9 7 31 31 H 1.08996 * 109.47273 * 213.15802 * 10 9 7 32 32 H 1.09000 * 109.46674 * 333.15755 * 10 9 7 33 33 H 1.09002 * 109.46720 * 180.02562 * 13 11 9 34 34 H 1.09001 * 109.47053 * 299.99557 * 13 11 9 35 35 H 1.08998 * 109.47265 * 60.00427 * 13 11 9 36 36 H 0.97003 * 119.99632 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1986 0.0000 4 6 3.5808 1.2079 0.0005 5 6 4.2824 0.0202 0.0001 6 6 3.5935 -1.1939 0.0055 7 6 4.3384 -2.4701 0.0113 8 8 4.0588 -3.3335 0.8200 9 7 5.3280 -2.6768 -0.8801 10 6 5.7311 -1.6013 -1.7896 11 6 6.0007 -3.9769 -0.9394 12 1 5.5683 -4.6440 -0.1937 13 6 5.8174 -4.5827 -2.3324 14 6 7.4704 -3.7953 -0.6600 15 1 7.8640 -2.8101 -0.4580 16 6 8.3124 -4.8872 -0.6613 17 7 7.8328 -6.0871 -0.9059 18 14 10.1340 -4.6622 -0.3143 19 1 10.3114 -4.0740 1.0378 20 1 10.8156 -5.9802 -0.3734 21 1 10.7231 -3.7537 -1.3305 22 6 2.1962 -1.1968 -0.0005 23 17 1.3289 -2.7007 -0.0019 24 1 -0.3634 -0.0004 1.0276 25 1 -0.3633 0.8902 -0.5135 26 1 -0.3633 -0.8898 -0.5142 27 1 1.6535 2.1319 -0.0004 28 1 4.1131 2.1476 0.0009 29 1 5.3623 0.0295 0.0001 30 1 6.5580 -1.0441 -1.3495 31 1 6.0469 -2.0293 -2.7410 32 1 4.8881 -0.9304 -1.9550 33 1 6.3175 -5.5502 -2.3764 34 1 4.7544 -4.7141 -2.5345 35 1 6.2495 -3.9157 -3.0784 36 1 8.4253 -6.8552 -0.9071 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000162010439.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:20 Heat of formation + Delta-G solvation = -15.022920 kcal Electronic energy + Delta-G solvation = -19946.426794 eV Core-core repulsion = 16842.577028 eV Total energy + Delta-G solvation = -3103.849766 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.092 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.03398 -38.23350 -36.27553 -35.30181 -33.34926 -32.47651 -30.94623 -29.20617 -27.03406 -26.18002 -25.21555 -23.84564 -21.84130 -20.85911 -18.62550 -16.84277 -16.55104 -16.30051 -15.72530 -15.43833 -14.64518 -14.39284 -14.09570 -13.93501 -13.51035 -13.01195 -12.58596 -12.56667 -12.45563 -12.24180 -11.78259 -11.66079 -11.53210 -11.41636 -11.17940 -11.05033 -10.80903 -10.69965 -10.57199 -10.26457 -10.15056 -9.17767 -9.07190 -8.75498 -8.64390 -8.41375 -7.59077 -6.05900 -4.13987 0.96567 1.13997 2.28256 3.21872 3.28787 3.33983 3.35761 3.66931 3.92127 4.40434 4.63241 4.74692 4.89885 5.08980 5.20809 5.25530 5.40320 5.47217 5.54458 5.63699 5.75066 5.96182 6.06032 6.16203 6.20933 6.28218 6.31602 6.68173 6.77914 6.84068 7.06122 7.42603 7.51903 7.71706 8.01722 8.19669 8.49830 8.82571 9.01329 9.52166 10.99411 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.027844 B = 0.004995 C = 0.004527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.356006 B = 5604.740419 C = 6183.843295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.087 4.087 3 C -0.101 4.101 4 C -0.119 4.119 5 C -0.086 4.086 6 C -0.101 4.101 7 C 0.543 3.457 8 O -0.529 6.529 9 N -0.583 5.583 10 C 0.082 3.918 11 C 0.259 3.741 12 H 0.065 0.935 13 C -0.147 4.147 14 C -0.525 4.525 15 H 0.058 0.942 16 C 0.065 3.935 17 N -0.888 5.888 18 Si 0.899 3.101 19 H -0.277 1.277 20 H -0.286 1.286 21 H -0.277 1.277 22 C -0.001 4.001 23 Cl -0.047 7.047 24 H 0.075 0.925 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.131 0.869 28 H 0.132 0.868 29 H 0.139 0.861 30 H 0.051 0.949 31 H 0.072 0.928 32 H 0.056 0.944 33 H 0.094 0.906 34 H 0.012 0.988 35 H 0.030 0.970 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.199 14.876 -1.683 18.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.088 4.088 3 C -0.119 4.119 4 C -0.137 4.137 5 C -0.104 4.104 6 C -0.105 4.105 7 C 0.328 3.672 8 O -0.406 6.406 9 N -0.314 5.314 10 C -0.062 4.062 11 C 0.159 3.841 12 H 0.082 0.918 13 C -0.206 4.206 14 C -0.564 4.564 15 H 0.077 0.923 16 C -0.137 4.137 17 N -0.526 5.526 18 Si 0.727 3.273 19 H -0.203 1.203 20 H -0.212 1.212 21 H -0.202 1.202 22 C -0.028 4.028 23 Cl -0.018 7.018 24 H 0.093 0.907 25 H 0.089 0.911 26 H 0.092 0.908 27 H 0.149 0.851 28 H 0.150 0.850 29 H 0.157 0.843 30 H 0.069 0.931 31 H 0.090 0.910 32 H 0.075 0.925 33 H 0.113 0.887 34 H 0.031 0.969 35 H 0.049 0.951 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.334 14.030 -1.293 18.083 hybrid contribution 1.115 0.076 0.108 1.123 sum -10.219 14.106 -1.185 17.459 Atomic orbital electron populations 1.20852 0.90157 1.03390 1.02937 1.19695 0.96767 0.91186 1.01121 1.21064 0.94238 0.96881 0.99752 1.21144 0.94121 0.98128 1.00354 1.21432 1.00781 0.90687 0.97539 1.20168 0.92240 0.95611 1.02450 1.18060 0.80813 0.85943 0.82347 1.90774 1.67253 1.44602 1.37996 1.48168 1.33786 1.15621 1.33839 1.21739 0.99039 0.90478 0.94918 1.18973 0.91646 0.78316 0.95120 0.91765 1.22098 0.97226 1.03576 0.97663 1.21255 0.92122 0.94079 1.48921 0.92342 1.24887 0.98906 0.95023 0.94920 1.69872 1.35450 0.98526 1.48727 0.86549 0.84625 0.77295 0.78864 1.20257 1.21170 1.20244 1.20819 0.91131 0.87720 1.03154 1.98387 1.75856 1.31117 1.96393 0.90670 0.91135 0.90783 0.85123 0.85044 0.84327 0.93055 0.90971 0.92515 0.88717 0.96909 0.95059 0.92625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.10 9.61 36.00 0.35 -0.76 16 2 C -0.09 -1.07 5.88 -104.64 -0.62 -1.68 16 3 C -0.10 -1.04 9.69 -39.51 -0.38 -1.42 16 4 C -0.12 -1.28 10.03 -39.64 -0.40 -1.67 16 5 C -0.09 -1.18 7.63 -39.18 -0.30 -1.48 16 6 C -0.10 -1.74 4.87 -104.94 -0.51 -2.25 16 7 C 0.54 11.88 6.72 -12.36 -0.08 11.79 16 8 O -0.53 -13.56 15.25 5.32 0.08 -13.48 16 9 N -0.58 -12.79 2.75 -176.41 -0.49 -13.28 16 10 C 0.08 1.41 8.38 59.85 0.50 1.92 16 11 C 0.26 6.71 2.63 -69.08 -0.18 6.53 16 12 H 0.06 1.93 6.91 -51.93 -0.36 1.57 16 13 C -0.15 -3.56 8.94 37.16 0.33 -3.23 16 14 C -0.53 -14.25 8.37 -34.44 -0.29 -14.54 16 15 H 0.06 1.55 7.56 -52.48 -0.40 1.15 16 16 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 17 N -0.89 -25.23 11.32 55.43 0.63 -24.60 16 18 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 22 C 0.00 -0.01 6.33 -39.07 -0.25 -0.26 16 23 Cl -0.05 -0.79 25.55 -51.86 -1.32 -2.11 16 24 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 26 H 0.07 0.74 6.90 -51.93 -0.36 0.38 16 27 H 0.13 0.93 8.06 -52.48 -0.42 0.51 16 28 H 0.13 1.01 8.06 -52.48 -0.42 0.58 16 29 H 0.14 1.83 6.65 -52.49 -0.35 1.48 16 30 H 0.05 0.83 7.50 -51.93 -0.39 0.44 16 31 H 0.07 1.24 6.44 -51.93 -0.33 0.91 16 32 H 0.06 0.83 5.70 -51.93 -0.30 0.53 16 33 H 0.09 2.50 6.07 -51.93 -0.32 2.19 16 34 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 35 H 0.03 0.69 6.68 -51.93 -0.35 0.35 16 36 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 309.32 15.07 4.66 4.66 Total: -1.00 -31.58 309.32 -7.77 -39.35 By element: Atomic # 1 Polarization: 3.15 SS G_CDS: -4.39 Total: -1.24 kcal Atomic # 6 Polarization: -3.44 SS G_CDS: -1.92 Total: -5.37 kcal Atomic # 7 Polarization: -38.03 SS G_CDS: 0.14 Total: -37.88 kcal Atomic # 8 Polarization: -13.56 SS G_CDS: 0.08 Total: -13.48 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 17 Polarization: -0.79 SS G_CDS: -1.32 Total: -2.11 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -31.58 -7.77 -39.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162010439.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.329 kcal (2) G-P(sol) polarization free energy of solvation -31.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds