Wall clock time and date at job start Tue Mar 31 2020 05:14:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38315 * 119.93094 * 2 1 4 4 C 1.38383 * 120.31308 * 180.02562 * 3 2 1 5 5 C 1.37943 * 120.18378 * 359.73674 * 4 3 2 6 6 C 1.39582 * 119.86228 * 0.51685 * 5 4 3 7 7 C 1.47772 * 120.15638 * 179.76880 * 6 5 4 8 8 O 1.21561 * 119.99809 * 229.37263 * 7 6 5 9 9 N 1.34774 * 119.99775 * 49.36411 * 7 6 5 10 10 C 1.46498 * 120.00414 * 355.70040 * 9 7 6 11 11 C 1.46503 * 119.99763 * 175.69643 * 9 7 6 12 12 H 1.08998 * 109.47074 * 0.02562 * 11 9 7 13 13 C 1.53003 * 109.46989 * 240.00488 * 11 9 7 14 14 C 1.50693 * 109.47006 * 120.00561 * 11 9 7 15 15 H 1.08005 * 120.00349 * 359.97438 * 14 11 9 16 16 C 1.37886 * 120.00175 * 180.02562 * 14 11 9 17 17 N 1.31516 * 119.99655 * 359.97438 * 16 14 11 18 18 Si 1.86793 * 120.00328 * 179.97438 * 16 14 11 19 19 H 1.48506 * 109.47016 * 89.99654 * 18 16 14 20 20 H 1.48499 * 109.47392 * 210.00272 * 18 16 14 21 21 H 1.48501 * 109.47200 * 330.00208 * 18 16 14 22 22 C 1.38111 * 119.93848 * 180.02562 * 2 1 3 23 23 Cl 1.73605 * 120.08857 * 359.95677 * 22 2 1 24 24 H 1.08993 * 109.47143 * 269.98102 * 1 2 3 25 25 H 1.08995 * 109.47027 * 29.98244 * 1 2 3 26 26 H 1.09000 * 109.46703 * 149.98287 * 1 2 3 27 27 H 1.07998 * 119.84689 * 0.03845 * 3 2 1 28 28 H 1.07996 * 119.90689 * 180.02562 * 4 3 2 29 29 H 1.07998 * 120.06738 * 180.25547 * 5 4 3 30 30 H 1.08996 * 109.47327 * 275.15988 * 10 9 7 31 31 H 1.08999 * 109.46525 * 35.15965 * 10 9 7 32 32 H 1.09002 * 109.46933 * 155.15336 * 10 9 7 33 33 H 1.08998 * 109.47167 * 299.99887 * 13 11 9 34 34 H 1.08991 * 109.47167 * 60.00499 * 13 11 9 35 35 H 1.09005 * 109.46531 * 179.97438 * 13 11 9 36 36 H 0.96997 * 119.99827 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1987 0.0000 4 6 3.5809 1.2079 -0.0005 5 6 4.2824 0.0202 0.0044 6 6 3.5936 -1.1938 -0.0010 7 6 4.3385 -2.4700 -0.0009 8 8 4.0560 -3.3387 -0.8029 9 7 5.3313 -2.6707 0.8883 10 6 5.7350 -1.5905 1.7918 11 6 6.0066 -3.9693 0.9514 12 1 5.5739 -4.6403 0.2095 13 6 5.8288 -4.5692 2.3477 14 6 7.4750 -3.7861 0.6667 15 1 7.8661 -2.8010 0.4590 16 6 8.3192 -4.8763 0.6702 17 7 7.8430 -6.0759 0.9226 18 14 10.1393 -4.6494 0.3166 19 1 10.8631 -4.3977 1.5887 20 1 10.6760 -5.8770 -0.3239 21 1 10.3258 -3.4929 -0.5961 22 6 2.1963 -1.1968 -0.0005 23 17 1.3289 -2.7007 -0.0001 24 1 -0.3633 -0.0003 1.0276 25 1 -0.3633 0.8901 -0.5135 26 1 -0.3633 -0.8898 -0.5141 27 1 1.6535 2.1319 0.0006 28 1 4.1131 2.1476 -0.0001 29 1 5.3623 0.0296 0.0081 30 1 6.4547 -0.9453 1.2880 31 1 4.8589 -1.0066 2.0741 32 1 6.1915 -2.0159 2.6855 33 1 6.2618 -3.8981 3.0894 34 1 4.7668 -4.7018 2.5536 35 1 6.3309 -5.5356 2.3944 36 1 8.4368 -6.8429 0.9248 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000162010530.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:21 Heat of formation + Delta-G solvation = -15.452631 kcal Electronic energy + Delta-G solvation = -19946.101368 eV Core-core repulsion = 16842.232968 eV Total energy + Delta-G solvation = -3103.868399 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.092 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.02049 -38.23319 -36.27074 -35.30465 -33.33992 -32.47750 -30.94058 -29.21117 -27.02667 -26.18766 -25.21580 -23.84090 -21.83621 -20.85956 -18.63259 -16.84387 -16.54615 -16.29049 -15.72400 -15.44773 -14.64905 -14.38091 -14.07792 -13.96645 -13.50479 -13.01741 -12.59969 -12.52763 -12.44703 -12.28234 -11.79423 -11.59503 -11.54395 -11.42721 -11.17032 -11.06928 -10.79743 -10.69642 -10.56371 -10.26358 -10.16505 -9.16907 -9.07076 -8.76254 -8.64032 -8.42158 -7.59486 -6.06361 -4.14344 0.96859 1.14603 2.28657 3.21733 3.26965 3.34214 3.37040 3.67891 3.92499 4.40197 4.63460 4.75071 4.89710 5.09361 5.21597 5.25259 5.40462 5.46800 5.55124 5.64459 5.76335 5.95524 6.04332 6.16612 6.21423 6.27774 6.32418 6.68781 6.77660 6.83981 7.05890 7.42786 7.51604 7.71571 8.01578 8.19522 8.49644 8.82588 9.01342 9.51900 10.98993 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.027831 B = 0.004994 C = 0.004526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.842903 B = 5605.600354 C = 6184.454259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.087 4.087 3 C -0.101 4.101 4 C -0.119 4.119 5 C -0.086 4.086 6 C -0.101 4.101 7 C 0.543 3.457 8 O -0.528 6.528 9 N -0.584 5.584 10 C 0.085 3.915 11 C 0.259 3.741 12 H 0.065 0.935 13 C -0.147 4.147 14 C -0.525 4.525 15 H 0.059 0.941 16 C 0.065 3.935 17 N -0.887 5.887 18 Si 0.899 3.101 19 H -0.280 1.280 20 H -0.285 1.285 21 H -0.275 1.275 22 C 0.000 4.000 23 Cl -0.047 7.047 24 H 0.074 0.926 25 H 0.070 0.930 26 H 0.074 0.926 27 H 0.131 0.869 28 H 0.131 0.869 29 H 0.139 0.861 30 H 0.048 0.952 31 H 0.052 0.948 32 H 0.076 0.924 33 H 0.030 0.970 34 H 0.012 0.988 35 H 0.094 0.906 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.177 14.848 1.680 18.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.088 4.088 3 C -0.119 4.119 4 C -0.137 4.137 5 C -0.105 4.105 6 C -0.105 4.105 7 C 0.329 3.671 8 O -0.406 6.406 9 N -0.315 5.315 10 C -0.059 4.059 11 C 0.159 3.841 12 H 0.082 0.918 13 C -0.206 4.206 14 C -0.563 4.563 15 H 0.077 0.923 16 C -0.138 4.138 17 N -0.526 5.526 18 Si 0.727 3.273 19 H -0.206 1.206 20 H -0.211 1.211 21 H -0.200 1.200 22 C -0.028 4.028 23 Cl -0.018 7.018 24 H 0.093 0.907 25 H 0.089 0.911 26 H 0.092 0.908 27 H 0.149 0.851 28 H 0.149 0.851 29 H 0.157 0.843 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.095 0.905 33 H 0.049 0.951 34 H 0.031 0.969 35 H 0.113 0.887 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -11.314 14.005 1.288 18.050 hybrid contribution 1.109 0.074 -0.090 1.115 sum -10.206 14.080 1.197 17.430 Atomic orbital electron populations 1.20852 0.90165 1.03460 1.02870 1.19696 0.96761 0.91189 1.01141 1.21068 0.94242 0.96876 0.99756 1.21147 0.94115 0.98131 1.00332 1.21452 1.00827 0.90686 0.97526 1.20166 0.92230 0.95591 1.02472 1.18055 0.80829 0.85981 0.82274 1.90775 1.67260 1.44265 1.38301 1.48169 1.33579 1.15536 1.34171 1.21704 0.98923 0.90405 0.94893 1.18985 0.91628 0.78417 0.95088 0.91753 1.22104 0.97258 1.03570 0.97627 1.21300 0.92160 0.94188 1.48676 0.92287 1.24892 0.98919 0.95021 0.94937 1.69879 1.35337 0.98603 1.48744 0.86487 0.84766 0.77706 0.78376 1.20630 1.21105 1.19951 1.20822 0.91139 0.87714 1.03138 1.98387 1.75843 1.31133 1.96394 0.90711 0.91125 0.90750 0.85134 0.85060 0.84285 0.93312 0.92918 0.90502 0.95071 0.96904 0.88710 0.92680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.11 9.61 36.00 0.35 -0.76 16 2 C -0.09 -1.07 5.88 -104.64 -0.62 -1.69 16 3 C -0.10 -1.04 9.69 -39.50 -0.38 -1.42 16 4 C -0.12 -1.28 10.03 -39.64 -0.40 -1.68 16 5 C -0.09 -1.20 7.80 -39.19 -0.31 -1.50 16 6 C -0.10 -1.74 4.87 -104.94 -0.51 -2.25 16 7 C 0.54 11.88 6.74 -12.36 -0.08 11.80 16 8 O -0.53 -13.55 15.22 5.31 0.08 -13.47 16 9 N -0.58 -12.79 2.75 -176.41 -0.49 -13.28 16 10 C 0.08 1.45 8.28 59.85 0.50 1.95 16 11 C 0.26 6.69 2.63 -69.08 -0.18 6.51 16 12 H 0.06 1.93 6.91 -51.93 -0.36 1.57 16 13 C -0.15 -3.56 8.96 37.16 0.33 -3.22 16 14 C -0.52 -14.22 8.37 -34.44 -0.29 -14.50 16 15 H 0.06 1.57 7.65 -52.48 -0.40 1.17 16 16 C 0.06 1.77 5.30 -17.82 -0.09 1.67 16 17 N -0.89 -25.20 11.32 55.43 0.63 -24.58 16 18 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 19 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 20 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 22 C 0.00 -0.01 6.33 -39.07 -0.25 -0.25 16 23 Cl -0.05 -0.79 25.53 -51.86 -1.32 -2.11 16 24 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 26 H 0.07 0.76 6.90 -51.93 -0.36 0.40 16 27 H 0.13 0.94 8.06 -52.49 -0.42 0.51 16 28 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 29 H 0.14 1.84 6.35 -52.49 -0.33 1.51 16 30 H 0.05 0.77 7.07 -51.93 -0.37 0.40 16 31 H 0.05 0.77 6.31 -51.93 -0.33 0.45 16 32 H 0.08 1.33 6.44 -51.93 -0.33 1.00 16 33 H 0.03 0.69 6.66 -51.93 -0.35 0.34 16 34 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 35 H 0.09 2.50 6.07 -51.93 -0.32 2.19 16 36 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 309.32 15.07 4.66 4.66 Total: -1.00 -31.56 309.32 -7.78 -39.34 By element: Atomic # 1 Polarization: 3.12 SS G_CDS: -4.39 Total: -1.27 kcal Atomic # 6 Polarization: -3.42 SS G_CDS: -1.93 Total: -5.36 kcal Atomic # 7 Polarization: -37.99 SS G_CDS: 0.14 Total: -37.85 kcal Atomic # 8 Polarization: -13.55 SS G_CDS: 0.08 Total: -13.47 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 17 Polarization: -0.79 SS G_CDS: -1.32 Total: -2.11 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -31.56 -7.78 -39.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162010530.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.890 kcal (2) G-P(sol) polarization free energy of solvation -31.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds