Wall clock time and date at job start Tue Mar 31 2020 05:04:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 120.00581 * 2 1 4 4 H 1.48497 * 109.47540 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46847 * 299.99948 * 3 2 1 6 6 H 1.48508 * 109.47264 * 59.99533 * 3 2 1 7 7 C 1.37880 * 119.99692 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00430 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99850 * 0.02562 * 7 2 1 10 10 N 1.46504 * 109.46773 * 180.02562 * 9 7 2 11 11 C 1.46499 * 120.00381 * 90.00257 * 10 9 7 12 12 C 1.53000 * 109.46840 * 269.99975 * 11 10 9 13 13 C 1.53003 * 117.49371 * 243.61805 * 12 11 10 14 14 C 1.53001 * 117.49608 * 174.99880 * 12 11 10 15 15 C 1.34781 * 119.99832 * 269.99817 * 10 9 7 16 16 O 1.21582 * 119.99995 * 0.02562 * 15 10 9 17 17 N 1.34777 * 120.00169 * 179.97438 * 15 10 9 18 18 C 1.39002 * 120.00084 * 180.02562 * 17 15 10 19 19 N 1.29622 * 124.94698 * 359.69709 * 18 17 15 20 20 C 1.32020 * 116.91204 * 179.77349 * 19 18 17 21 21 C 1.33414 * 114.56356 * 0.51697 * 20 19 18 22 22 S 1.70962 * 124.94559 * 180.02562 * 18 17 15 23 23 H 0.96996 * 119.99637 * 359.97438 * 1 2 3 24 24 H 1.08992 * 109.46915 * 60.00270 * 9 7 2 25 25 H 1.08994 * 109.47284 * 299.99534 * 9 7 2 26 26 H 1.09002 * 109.47391 * 149.99645 * 11 10 9 27 27 H 1.09001 * 109.46813 * 29.99701 * 11 10 9 28 28 H 1.08995 * 115.55630 * 29.32490 * 12 11 10 29 29 H 1.08998 * 117.50656 * 0.02562 * 13 12 11 30 30 H 1.09001 * 117.49674 * 145.02590 * 13 12 11 31 31 H 1.09003 * 117.49710 * 214.97494 * 14 12 11 32 32 H 1.08998 * 117.50185 * 359.97438 * 14 12 11 33 33 H 0.96998 * 119.99511 * 0.02562 * 17 15 10 34 34 H 1.07994 * 122.71890 * 180.24876 * 20 19 18 35 35 H 1.08003 * 125.96296 * 179.69689 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2508 -2.4992 0.0005 10 7 2.2028 -3.6127 0.0018 11 6 2.6779 -4.1690 1.2711 12 6 3.9397 -3.4253 1.7134 13 6 5.2385 -4.2291 1.8030 14 6 4.5264 -3.7809 3.0809 15 6 2.6416 -4.1255 -1.1649 16 8 2.2477 -3.6636 -2.2183 17 7 3.5178 -5.1496 -1.1639 18 6 3.9707 -5.6780 -2.3671 19 7 3.6107 -5.2650 -3.5418 20 6 4.1447 -5.8797 -4.5810 21 6 4.9878 -6.8655 -4.2692 22 16 5.0777 -6.9727 -2.5131 23 1 -0.4849 0.8400 0.0004 24 1 0.6246 -2.5571 -0.8896 25 1 0.6239 -2.5567 0.8903 26 1 2.9062 -5.2269 1.1413 27 1 1.9039 -4.0548 2.0300 28 1 4.0113 -2.3870 1.3895 29 1 5.1942 -5.2875 1.5465 30 1 6.1649 -3.7196 1.5380 31 1 4.9844 -2.9765 3.6566 32 1 4.0133 -4.5443 3.6657 33 1 3.8323 -5.5178 -0.3234 34 1 3.9142 -5.6094 -5.6008 35 1 5.5214 -7.4894 -4.9709 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176333045.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:17 Heat of formation + Delta-G solvation = 66.139152 kcal Electronic energy + Delta-G solvation = -19858.734727 eV Core-core repulsion = 16792.740870 eV Total energy + Delta-G solvation = -3065.993857 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.28585 -38.89217 -37.19235 -34.80592 -34.21425 -32.47773 -29.36304 -27.81778 -26.37374 -24.79474 -22.92214 -22.29635 -21.21815 -20.50172 -19.19456 -18.48532 -17.22889 -16.54299 -16.19237 -15.36435 -15.05757 -14.95545 -14.58421 -14.30864 -13.89378 -13.50906 -13.37793 -13.03858 -12.33136 -12.25078 -11.54635 -11.48623 -11.41044 -11.23381 -10.95917 -10.64598 -10.56375 -10.39066 -9.93904 -9.92000 -9.64658 -9.53102 -9.21368 -8.91071 -8.42033 -8.12804 -7.68803 -6.03244 -4.06871 0.93977 1.07871 1.75829 3.00252 3.08017 3.30707 3.38886 3.42397 3.87171 3.94776 4.23342 4.46341 4.84405 4.93495 5.02055 5.22547 5.29667 5.31518 5.37758 5.61946 5.68554 5.82998 5.89151 6.01744 6.05682 6.20032 6.41648 6.61945 6.71983 7.22756 7.46191 7.54520 7.93363 8.05469 8.23314 8.50601 8.93105 9.21144 9.57942 11.05012 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.016844 B = 0.005633 C = 0.004704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.865709 B = 4969.498501 C = 5950.737565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.062 3.938 3 Si 0.896 3.104 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.059 0.941 9 C 0.261 3.739 10 N -0.603 5.603 11 C 0.145 3.855 12 C -0.164 4.164 13 C -0.191 4.191 14 C -0.175 4.175 15 C 0.693 3.307 16 O -0.518 6.518 17 N -0.647 5.647 18 C 0.314 3.686 19 N -0.480 5.480 20 C 0.078 3.922 21 C -0.292 4.292 22 S 0.084 5.916 23 H 0.262 0.738 24 H 0.046 0.954 25 H 0.036 0.964 26 H 0.055 0.945 27 H 0.088 0.912 28 H 0.126 0.874 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.411 0.589 34 H 0.176 0.824 35 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.867 -15.249 1.358 18.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.140 4.140 3 Si 0.724 3.276 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.561 4.561 8 H 0.077 0.923 9 C 0.142 3.858 10 N -0.339 5.339 11 C 0.020 3.980 12 C -0.184 4.184 13 C -0.228 4.228 14 C -0.213 4.213 15 C 0.392 3.608 16 O -0.388 6.388 17 N -0.303 5.303 18 C -0.057 4.057 19 N -0.201 5.201 20 C -0.073 4.073 21 C -0.432 4.432 22 S 0.332 5.668 23 H 0.072 0.928 24 H 0.064 0.936 25 H 0.054 0.946 26 H 0.073 0.927 27 H 0.106 0.894 28 H 0.144 0.856 29 H 0.104 0.896 30 H 0.110 0.890 31 H 0.111 0.889 32 H 0.111 0.889 33 H 0.250 0.750 34 H 0.193 0.807 35 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 10.431 -14.849 1.328 18.196 hybrid contribution 0.579 1.054 -0.339 1.249 sum 11.010 -13.795 0.989 17.678 Atomic orbital electron populations 1.69933 1.05942 1.26873 1.50611 1.24910 0.94846 0.99118 0.95158 0.86476 0.79973 0.83600 0.77554 1.19913 1.20900 1.21027 1.21471 0.93322 0.90550 1.50716 0.92308 1.19310 0.86569 0.81283 0.98645 1.47596 1.47344 1.37027 1.01890 1.20989 0.95263 0.94216 0.87540 1.23147 0.93355 1.02189 0.99689 1.23030 0.97133 0.99669 1.03016 1.22875 1.04197 1.03447 0.90764 1.15976 0.79766 0.79466 0.85628 1.91035 1.58299 1.60074 1.29367 1.42726 1.46694 1.36083 1.04768 1.23571 0.96684 0.95583 0.89891 1.66646 1.27471 1.29664 0.96309 1.21734 0.94205 0.92589 0.98788 1.26623 1.11822 1.09023 0.95776 1.83759 1.44528 1.33452 1.05100 0.92788 0.93583 0.94572 0.92690 0.89371 0.85603 0.89577 0.89050 0.88904 0.88948 0.75042 0.80689 0.80699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.41 13.29 55.43 0.74 -25.67 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 4 H -0.27 -6.65 7.11 56.52 0.40 -6.24 16 5 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 7 C -0.52 -14.49 9.03 -34.44 -0.31 -14.80 16 8 H 0.06 1.64 6.66 -52.49 -0.35 1.29 16 9 C 0.26 6.69 5.20 -5.19 -0.03 6.66 16 10 N -0.60 -12.58 2.46 -180.80 -0.44 -13.02 16 11 C 0.14 2.24 5.50 -4.04 -0.02 2.22 16 12 C -0.16 -2.47 6.01 -90.62 -0.54 -3.01 16 13 C -0.19 -2.25 10.00 -26.73 -0.27 -2.52 16 14 C -0.18 -2.05 10.25 -26.73 -0.27 -2.33 16 15 C 0.69 15.14 8.24 -86.91 -0.72 14.42 16 16 O -0.52 -13.92 14.55 5.29 0.08 -13.84 16 17 N -0.65 -10.95 5.27 -17.48 -0.09 -11.04 16 18 C 0.31 5.23 8.02 -87.35 -0.70 4.53 16 19 N -0.48 -9.08 8.65 -15.12 -0.13 -9.21 16 20 C 0.08 1.11 11.34 -19.16 -0.22 0.90 16 21 C -0.29 -3.30 11.35 29.05 0.33 -2.97 16 22 S 0.08 0.98 23.22 -107.50 -2.50 -1.52 16 23 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 24 H 0.05 1.35 7.42 -51.93 -0.39 0.96 16 25 H 0.04 0.93 7.89 -51.93 -0.41 0.52 16 26 H 0.05 0.67 6.10 -51.93 -0.32 0.35 16 27 H 0.09 1.32 7.89 -51.93 -0.41 0.91 16 28 H 0.13 2.37 6.57 -51.93 -0.34 2.03 16 29 H 0.09 0.84 7.76 -51.93 -0.40 0.43 16 30 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 31 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.41 5.43 6.10 -40.82 -0.25 5.18 16 34 H 0.18 2.03 8.06 -52.49 -0.42 1.60 16 35 H 0.18 1.37 8.06 -52.48 -0.42 0.95 16 LS Contribution 313.92 15.07 4.73 4.73 Total: -1.00 -34.49 313.92 -9.60 -44.09 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -4.11 Total: 3.82 kcal Atomic # 6 Polarization: 7.59 SS G_CDS: -2.85 Total: 4.75 kcal Atomic # 7 Polarization: -59.02 SS G_CDS: 0.07 Total: -58.95 kcal Atomic # 8 Polarization: -13.92 SS G_CDS: 0.08 Total: -13.84 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Atomic # 16 Polarization: 0.98 SS G_CDS: -2.50 Total: -1.52 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -34.49 -9.60 -44.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176333045.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.232 kcal (2) G-P(sol) polarization free energy of solvation -34.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds