Wall clock time and date at job start Tue Mar 31 2020 05:34:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46850 * 2 1 4 4 C 1.53002 * 109.47014 * 119.99972 * 2 1 3 5 5 C 1.50699 * 109.47052 * 299.99911 * 4 2 1 6 6 C 1.38237 * 120.00455 * 99.99936 * 5 4 2 7 7 C 1.38224 * 120.01313 * 179.74163 * 6 5 4 8 8 C 1.38264 * 120.02445 * 0.26351 * 7 6 5 9 9 C 1.38190 * 120.01695 * 0.02562 * 8 7 6 10 10 C 1.38328 * 120.01174 * 280.27671 * 5 4 2 11 11 Cl 1.73603 * 120.01189 * 0.02562 * 10 5 4 12 12 N 1.46497 * 109.46963 * 240.00036 * 2 1 3 13 13 C 1.34777 * 120.00212 * 60.00506 * 12 2 1 14 14 O 1.21686 * 120.00057 * 359.97438 * 13 12 2 15 15 C 1.46372 * 119.99803 * 180.02562 * 13 12 2 16 16 H 1.07997 * 120.00393 * 359.97438 * 15 13 12 17 17 C 1.40055 * 119.99962 * 179.97438 * 15 13 12 18 18 N 1.30671 * 119.99491 * 359.97438 * 17 15 13 19 19 Si 1.86796 * 120.00267 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.46841 * 60.00205 * 19 17 15 21 21 H 1.48496 * 109.47239 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47338 * 300.00386 * 19 17 15 23 23 H 1.09004 * 109.47045 * 299.99789 * 1 2 3 24 24 H 1.08996 * 109.47165 * 60.00218 * 1 2 3 25 25 H 1.09002 * 109.46585 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47173 * 179.97438 * 3 2 1 27 27 H 1.09006 * 109.47069 * 300.00051 * 3 2 1 28 28 H 1.09004 * 109.47307 * 59.99737 * 3 2 1 29 29 H 1.08996 * 109.46910 * 180.02562 * 4 2 1 30 30 H 1.08991 * 109.47239 * 59.99853 * 4 2 1 31 31 H 1.08002 * 119.99593 * 0.02780 * 6 5 4 32 32 H 1.07996 * 119.98813 * 180.23496 * 7 6 5 33 33 H 1.08004 * 119.98845 * 179.97438 * 8 7 6 34 34 H 1.08000 * 120.00844 * 180.02562 * 9 8 7 35 35 H 0.96997 * 119.99601 * 239.99259 * 12 2 1 36 36 H 0.97006 * 119.99690 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.5377 -0.0108 2.4797 6 6 0.4426 -0.5041 3.1641 7 6 -0.0150 0.1443 4.2958 8 6 0.6188 1.2898 4.7407 9 6 1.7099 1.7873 4.0540 10 6 2.1687 1.1383 2.9212 11 17 3.5391 1.7628 2.0577 12 7 2.0183 -0.6906 -1.1962 13 6 1.6928 -0.2301 -2.4203 14 8 0.9929 0.7591 -2.5320 15 6 2.1803 -0.9205 -3.6154 16 1 2.8011 -1.7986 -3.5163 17 6 1.8416 -0.4423 -4.8874 18 7 1.0900 0.6199 -5.0073 19 14 2.4642 -1.3229 -6.4126 20 1 1.9695 -2.7231 -6.4123 21 1 1.9683 -0.6235 -7.6251 22 1 3.9492 -1.3226 -6.4129 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3632 -1.0277 -0.0005 26 1 3.1299 1.4426 0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6766 1.9564 0.8900 29 1 3.1300 -0.7208 1.2495 30 1 1.6767 -1.7488 1.2493 31 1 -0.0526 -1.3990 2.8172 32 1 -0.8682 -0.2436 4.8323 33 1 0.2605 1.7962 5.6248 34 1 2.2051 2.6818 4.4019 35 1 2.5761 -1.4792 -1.1071 36 1 0.8551 0.9509 -5.8883 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185118804.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:10 Heat of formation + Delta-G solvation = -15.981486 kcal Electronic energy + Delta-G solvation = -20044.408782 eV Core-core repulsion = 16940.517450 eV Total energy + Delta-G solvation = -3103.891332 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.092 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.86987 -37.89975 -36.37634 -35.17280 -32.50470 -31.70209 -30.77952 -29.72515 -26.57819 -26.54439 -25.96492 -22.63273 -22.07319 -20.30394 -18.33284 -17.30429 -16.83075 -15.64710 -15.42760 -15.34255 -14.96598 -14.17455 -13.85220 -13.79680 -13.40804 -12.98395 -12.63753 -12.51259 -12.34071 -11.74136 -11.55664 -11.44790 -11.34922 -11.15551 -11.05131 -10.86257 -10.78243 -10.45331 -10.41015 -10.28816 -10.11968 -9.49828 -8.87134 -8.78805 -8.51319 -7.38923 -7.38057 -6.11408 -4.57851 1.13768 1.23388 2.25475 3.18335 3.23296 3.24945 3.58578 4.14157 4.59708 4.65028 4.74522 4.86268 5.08608 5.21579 5.33193 5.47019 5.49529 5.61135 5.80685 5.87170 5.94964 6.13055 6.17296 6.18997 6.34369 6.40975 6.49505 6.58874 6.67194 6.76566 6.82066 7.23908 7.33256 7.48670 7.99702 8.23214 8.40441 9.08353 9.64610 10.66755 10.87795 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.033834 B = 0.004420 C = 0.004215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.368941 B = 6333.422902 C = 6641.507928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.195 3.805 3 C -0.164 4.164 4 C -0.090 4.090 5 C -0.052 4.052 6 C -0.104 4.104 7 C -0.117 4.117 8 C -0.119 4.119 9 C -0.113 4.113 10 C -0.032 4.032 11 Cl -0.058 7.058 12 N -0.760 5.760 13 C 0.561 3.439 14 O -0.572 6.572 15 C -0.548 4.548 16 H 0.065 0.935 17 C 0.089 3.911 18 N -0.768 5.768 19 Si 0.905 3.095 20 H -0.269 1.269 21 H -0.281 1.281 22 H -0.269 1.269 23 H 0.043 0.957 24 H 0.084 0.916 25 H 0.042 0.958 26 H 0.054 0.946 27 H 0.077 0.923 28 H 0.047 0.953 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.130 0.870 32 H 0.125 0.875 33 H 0.127 0.873 34 H 0.130 0.870 35 H 0.377 0.623 36 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.984 -1.282 17.714 17.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.108 3.892 3 C -0.222 4.222 4 C -0.127 4.127 5 C -0.053 4.053 6 C -0.122 4.122 7 C -0.135 4.135 8 C -0.137 4.137 9 C -0.132 4.132 10 C -0.058 4.058 11 Cl -0.028 7.028 12 N -0.415 5.415 13 C 0.365 3.635 14 O -0.455 6.455 15 C -0.585 4.585 16 H 0.083 0.917 17 C -0.130 4.130 18 N -0.397 5.397 19 Si 0.729 3.271 20 H -0.194 1.194 21 H -0.206 1.206 22 H -0.194 1.194 23 H 0.062 0.938 24 H 0.103 0.897 25 H 0.061 0.939 26 H 0.073 0.927 27 H 0.095 0.905 28 H 0.066 0.934 29 H 0.098 0.902 30 H 0.094 0.906 31 H 0.148 0.852 32 H 0.143 0.857 33 H 0.145 0.855 34 H 0.148 0.852 35 H 0.208 0.792 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.490 -0.345 17.414 17.425 hybrid contribution 0.692 -0.794 -0.741 1.287 sum 1.182 -1.139 16.673 16.754 Atomic orbital electron populations 1.22235 0.95757 1.00927 1.02612 1.19736 0.93368 0.92185 0.83894 1.22876 1.00472 0.96465 1.02408 1.20989 1.01446 0.98880 0.91428 1.19688 0.95110 0.93991 0.96494 1.21074 0.95546 1.00501 0.95091 1.21202 0.99907 0.95774 0.96639 1.21041 0.95820 0.96733 1.00130 1.21035 0.97530 1.00251 0.94353 1.20864 0.93123 0.96480 0.95374 1.98385 1.43175 1.86445 1.74835 1.46229 1.57608 1.32634 1.05027 1.18067 0.80115 0.84114 0.81247 1.90527 1.41275 1.28021 1.85689 1.20874 1.34127 1.13727 0.89766 0.91725 1.25664 0.93391 0.94089 0.99859 1.70008 1.27094 1.18607 1.23998 0.86491 0.79721 0.80049 0.80790 1.19390 1.20645 1.19382 0.93846 0.89698 0.93912 0.92733 0.90458 0.93407 0.90188 0.90580 0.85179 0.85666 0.85508 0.85232 0.79170 0.92202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.09 7.99 37.16 0.30 -2.80 16 2 C 0.20 3.75 0.83 -131.82 -0.11 3.64 16 3 C -0.16 -3.32 6.43 37.16 0.24 -3.08 16 4 C -0.09 -1.35 4.34 -27.88 -0.12 -1.47 16 5 C -0.05 -0.71 3.99 -104.59 -0.42 -1.12 16 6 C -0.10 -1.22 8.71 -39.59 -0.34 -1.57 16 7 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16 8 C -0.12 -1.18 10.05 -39.59 -0.40 -1.58 16 9 C -0.11 -1.29 9.83 -39.55 -0.39 -1.67 16 10 C -0.03 -0.43 4.99 -39.50 -0.20 -0.63 16 11 Cl -0.06 -0.82 22.38 -51.86 -1.16 -1.98 16 12 N -0.76 -16.87 5.10 -49.00 -0.25 -17.12 16 13 C 0.56 15.62 7.17 -12.99 -0.09 15.53 16 14 O -0.57 -17.75 11.22 5.20 0.06 -17.69 16 15 C -0.55 -15.44 9.54 -35.63 -0.34 -15.78 16 16 H 0.06 1.68 7.85 -52.49 -0.41 1.27 16 17 C 0.09 2.50 5.50 -17.36 -0.10 2.40 16 18 N -0.77 -22.98 11.83 55.55 0.66 -22.32 16 19 Si 0.90 20.29 29.56 -169.99 -5.02 15.26 16 20 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 21 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 22 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 23 H 0.04 0.76 6.64 -51.93 -0.34 0.41 16 24 H 0.08 2.04 6.16 -51.93 -0.32 1.72 16 25 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 26 H 0.05 1.07 5.99 -51.93 -0.31 0.76 16 27 H 0.08 1.91 6.16 -51.93 -0.32 1.59 16 28 H 0.05 0.87 5.03 -51.93 -0.26 0.61 16 29 H 0.08 1.18 7.37 -51.93 -0.38 0.80 16 30 H 0.08 1.03 8.00 -51.93 -0.42 0.62 16 31 H 0.13 1.36 8.04 -52.49 -0.42 0.94 16 32 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 33 H 0.13 0.92 8.06 -52.48 -0.42 0.49 16 34 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 35 H 0.38 7.44 8.45 -40.82 -0.35 7.10 16 36 H 0.27 7.32 8.29 -40.82 -0.34 6.98 16 LS Contribution 301.12 15.07 4.54 4.54 Total: -1.00 -32.87 301.12 -7.91 -40.77 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: -4.36 Total: 8.25 kcal Atomic # 6 Polarization: -7.35 SS G_CDS: -2.37 Total: -9.71 kcal Atomic # 7 Polarization: -39.85 SS G_CDS: 0.41 Total: -39.44 kcal Atomic # 8 Polarization: -17.75 SS G_CDS: 0.06 Total: -17.69 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.26 kcal Atomic # 17 Polarization: -0.82 SS G_CDS: -1.16 Total: -1.98 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -32.87 -7.91 -40.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185118804.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.791 kcal (2) G-P(sol) polarization free energy of solvation -32.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds