Wall clock time and date at job start Tue Mar 31 2020 05:34:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46850 * 2 1 4 4 C 1.53002 * 109.47014 * 119.99972 * 2 1 3 5 5 C 1.50699 * 109.47052 * 299.99911 * 4 2 1 6 6 C 1.38237 * 120.00455 * 99.99936 * 5 4 2 7 7 C 1.38224 * 120.01313 * 179.74163 * 6 5 4 8 8 C 1.38264 * 120.02445 * 0.26351 * 7 6 5 9 9 C 1.38190 * 120.01695 * 0.02562 * 8 7 6 10 10 C 1.38328 * 120.01174 * 280.27671 * 5 4 2 11 11 Cl 1.73603 * 120.01189 * 0.02562 * 10 5 4 12 12 N 1.46497 * 109.46963 * 240.00036 * 2 1 3 13 13 C 1.34777 * 120.00212 * 60.00506 * 12 2 1 14 14 O 1.21686 * 120.00057 * 359.97438 * 13 12 2 15 15 C 1.46372 * 119.99803 * 180.02562 * 13 12 2 16 16 H 1.07997 * 120.00393 * 359.97438 * 15 13 12 17 17 C 1.40055 * 119.99962 * 179.97438 * 15 13 12 18 18 N 1.30671 * 119.99491 * 359.97438 * 17 15 13 19 19 Si 1.86796 * 120.00267 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.46841 * 60.00205 * 19 17 15 21 21 H 1.48496 * 109.47239 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47338 * 300.00386 * 19 17 15 23 23 H 1.09004 * 109.47045 * 299.99789 * 1 2 3 24 24 H 1.08996 * 109.47165 * 60.00218 * 1 2 3 25 25 H 1.09002 * 109.46585 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47173 * 179.97438 * 3 2 1 27 27 H 1.09006 * 109.47069 * 300.00051 * 3 2 1 28 28 H 1.09004 * 109.47307 * 59.99737 * 3 2 1 29 29 H 1.08996 * 109.46910 * 180.02562 * 4 2 1 30 30 H 1.08991 * 109.47239 * 59.99853 * 4 2 1 31 31 H 1.08002 * 119.99593 * 0.02780 * 6 5 4 32 32 H 1.07996 * 119.98813 * 180.23496 * 7 6 5 33 33 H 1.08004 * 119.98845 * 179.97438 * 8 7 6 34 34 H 1.08000 * 120.00844 * 180.02562 * 9 8 7 35 35 H 0.96997 * 119.99601 * 239.99259 * 12 2 1 36 36 H 0.97006 * 119.99690 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.5377 -0.0108 2.4797 6 6 0.4426 -0.5041 3.1641 7 6 -0.0150 0.1443 4.2958 8 6 0.6188 1.2898 4.7407 9 6 1.7099 1.7873 4.0540 10 6 2.1687 1.1383 2.9212 11 17 3.5391 1.7628 2.0577 12 7 2.0183 -0.6906 -1.1962 13 6 1.6928 -0.2301 -2.4203 14 8 0.9929 0.7591 -2.5320 15 6 2.1803 -0.9205 -3.6154 16 1 2.8011 -1.7986 -3.5163 17 6 1.8416 -0.4423 -4.8874 18 7 1.0900 0.6199 -5.0073 19 14 2.4642 -1.3229 -6.4126 20 1 1.9695 -2.7231 -6.4123 21 1 1.9683 -0.6235 -7.6251 22 1 3.9492 -1.3226 -6.4129 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3632 -1.0277 -0.0005 26 1 3.1299 1.4426 0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6766 1.9564 0.8900 29 1 3.1300 -0.7208 1.2495 30 1 1.6767 -1.7488 1.2493 31 1 -0.0526 -1.3990 2.8172 32 1 -0.8682 -0.2436 4.8323 33 1 0.2605 1.7962 5.6248 34 1 2.2051 2.6818 4.4019 35 1 2.5761 -1.4792 -1.1071 36 1 0.8551 0.9509 -5.8883 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000185118804.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:10 Heat of formation + Delta-G solvation = -37.150378 kcal Electronic energy + Delta-G solvation = -20045.326734 eV Core-core repulsion = 16940.517450 eV Total energy + Delta-G solvation = -3104.809284 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.092 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.00414 -39.55972 -37.42727 -36.89278 -34.55017 -33.23853 -31.69819 -31.27515 -28.21258 -28.09980 -27.71046 -23.53753 -23.35000 -21.88471 -20.06501 -19.18159 -17.82816 -17.42394 -16.71537 -16.62367 -16.25664 -15.75633 -15.38764 -14.95314 -14.73895 -14.40078 -14.26082 -13.99808 -13.92075 -13.15368 -13.12674 -12.82726 -12.70951 -12.61294 -12.55855 -12.49426 -12.30961 -12.05554 -11.97347 -11.82980 -11.71637 -10.94314 -10.77665 -9.77824 -9.63248 -9.43593 -9.31524 -8.21173 -6.78447 0.24362 0.36124 1.25532 1.40200 1.43626 1.54395 2.26479 2.55285 2.70079 3.12326 3.69631 3.84742 3.88532 4.00789 4.12542 4.25378 4.33382 4.46105 4.49168 4.70534 4.76053 4.83696 4.86376 4.93121 5.05200 5.09879 5.13499 5.35071 5.35643 5.46892 5.52608 5.56383 5.62067 5.93745 5.95582 6.31694 6.44759 6.93237 7.68359 8.59265 8.77982 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.033834 B = 0.004420 C = 0.004215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.368941 B = 6333.422902 C = 6641.507928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.190 3.810 3 C -0.150 4.150 4 C -0.076 4.076 5 C -0.074 4.074 6 C -0.110 4.110 7 C -0.113 4.113 8 C -0.111 4.111 9 C -0.120 4.120 10 C -0.051 4.051 11 Cl -0.077 7.077 12 N -0.750 5.750 13 C 0.546 3.454 14 O -0.612 6.612 15 C -0.579 4.579 16 H 0.082 0.918 17 C 0.032 3.968 18 N -0.821 5.821 19 Si 0.992 3.008 20 H -0.255 1.255 21 H -0.276 1.276 22 H -0.257 1.257 23 H 0.065 0.935 24 H 0.034 0.966 25 H 0.053 0.947 26 H 0.056 0.944 27 H 0.024 0.976 28 H 0.066 0.934 29 H 0.080 0.920 30 H 0.093 0.907 31 H 0.143 0.857 32 H 0.156 0.844 33 H 0.160 0.840 34 H 0.144 0.856 35 H 0.390 0.610 36 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.996 -2.839 19.525 19.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.104 3.896 3 C -0.208 4.208 4 C -0.114 4.114 5 C -0.075 4.075 6 C -0.128 4.128 7 C -0.131 4.131 8 C -0.129 4.129 9 C -0.138 4.138 10 C -0.077 4.077 11 Cl -0.048 7.048 12 N -0.404 5.404 13 C 0.350 3.650 14 O -0.498 6.498 15 C -0.616 4.616 16 H 0.100 0.900 17 C -0.183 4.183 18 N -0.451 5.451 19 Si 0.812 3.188 20 H -0.179 1.179 21 H -0.201 1.201 22 H -0.181 1.181 23 H 0.084 0.916 24 H 0.053 0.947 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.043 0.957 28 H 0.085 0.915 29 H 0.098 0.902 30 H 0.112 0.888 31 H 0.161 0.839 32 H 0.174 0.826 33 H 0.177 0.823 34 H 0.162 0.838 35 H 0.224 0.776 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.523 -1.932 19.276 19.379 hybrid contribution 0.630 -0.271 -1.125 1.318 sum 1.153 -2.203 18.151 18.320 Atomic orbital electron populations 1.22076 0.96069 1.01111 1.01117 1.19917 0.93167 0.91874 0.84649 1.22773 1.00411 0.97063 1.00544 1.20785 1.01444 0.99338 0.89808 1.19631 0.96596 0.94650 0.96643 1.21315 0.94835 1.01084 0.95536 1.21603 1.00318 0.95310 0.95837 1.21474 0.94557 0.96383 1.00495 1.21316 0.98104 1.00683 0.93742 1.21072 0.93099 0.97140 0.96405 1.98373 1.44245 1.86680 1.75506 1.45960 1.56969 1.32794 1.04707 1.18369 0.79845 0.83777 0.83051 1.90511 1.42894 1.29648 1.86796 1.21435 1.34806 1.14598 0.90743 0.89994 1.26858 0.93001 0.94629 1.03789 1.70184 1.28891 1.20800 1.25236 0.85161 0.79396 0.78841 0.75421 1.17925 1.20075 1.18143 0.91586 0.94723 0.92799 0.92533 0.95703 0.91514 0.90174 0.88829 0.83892 0.82588 0.82289 0.83844 0.77644 0.91858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.79 7.99 71.98 0.58 -5.22 16 2 C 0.19 7.37 0.83 3.61 0.00 7.37 16 3 C -0.15 -6.28 6.43 71.98 0.46 -5.82 16 4 C -0.08 -2.19 4.34 29.85 0.13 -2.06 16 5 C -0.07 -1.88 3.99 -19.84 -0.08 -1.96 16 6 C -0.11 -2.24 8.71 22.27 0.19 -2.05 16 7 C -0.11 -1.82 10.05 22.27 0.22 -1.59 16 8 C -0.11 -1.76 10.05 22.26 0.22 -1.54 16 9 C -0.12 -2.43 9.83 22.29 0.22 -2.21 16 10 C -0.05 -1.30 4.99 22.32 0.11 -1.18 16 11 Cl -0.08 -2.19 22.38 -2.72 -0.06 -2.25 16 12 N -0.75 -33.90 5.10 -427.16 -2.18 -36.08 16 13 C 0.55 31.55 7.17 86.36 0.62 32.17 16 14 O -0.61 -40.15 11.22 -4.30 -0.05 -40.20 16 15 C -0.58 -33.21 9.54 24.83 0.24 -32.97 16 16 H 0.08 4.24 7.85 -2.91 -0.02 4.22 16 17 C 0.03 1.81 5.50 85.31 0.47 2.28 16 18 N -0.82 -50.88 11.83 21.84 0.26 -50.62 16 19 Si 0.99 41.80 29.56 68.60 2.03 43.83 16 20 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 21 H -0.28 -11.26 7.11 99.48 0.71 -10.55 16 22 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 23 H 0.07 2.27 6.64 -2.39 -0.02 2.26 16 24 H 0.03 1.73 6.16 -2.39 -0.01 1.71 16 25 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 26 H 0.06 2.30 5.99 -2.39 -0.01 2.28 16 27 H 0.02 1.28 6.16 -2.38 -0.01 1.26 16 28 H 0.07 2.49 5.03 -2.39 -0.01 2.48 16 29 H 0.08 2.29 7.37 -2.39 -0.02 2.27 16 30 H 0.09 2.34 8.00 -2.39 -0.02 2.32 16 31 H 0.14 2.50 8.04 -2.91 -0.02 2.48 16 32 H 0.16 1.56 8.06 -2.91 -0.02 1.53 16 33 H 0.16 1.49 8.06 -2.91 -0.02 1.47 16 34 H 0.14 2.42 8.06 -2.91 -0.02 2.39 16 35 H 0.39 15.35 8.45 -92.71 -0.78 14.56 16 36 H 0.27 15.37 8.29 -92.70 -0.77 14.61 16 Total: -1.00 -75.53 301.12 3.71 -71.82 By element: Atomic # 1 Polarization: 27.94 SS G_CDS: 0.32 Total: 28.26 kcal Atomic # 6 Polarization: -18.16 SS G_CDS: 3.39 Total: -14.77 kcal Atomic # 7 Polarization: -84.77 SS G_CDS: -1.92 Total: -86.69 kcal Atomic # 8 Polarization: -40.15 SS G_CDS: -0.05 Total: -40.20 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 2.03 Total: 43.83 kcal Atomic # 17 Polarization: -2.19 SS G_CDS: -0.06 Total: -2.25 kcal Total: -75.53 3.71 -71.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185118804.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.672 kcal (2) G-P(sol) polarization free energy of solvation -75.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds