Wall clock time and date at job start Tue Mar 31 2020 05:26:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31241 * 124.05575 * 2 1 4 4 N 1.27330 * 120.03888 * 180.37203 * 3 2 1 5 5 S 1.56637 * 109.73808 * 359.69031 * 4 3 2 6 6 C 1.38240 * 124.05653 * 179.81892 * 2 1 3 7 7 C 1.47174 * 128.47465 * 359.97438 * 6 2 1 8 8 O 1.21623 * 120.00099 * 6.46762 * 7 6 2 9 9 N 1.34774 * 120.00020 * 186.46626 * 7 6 2 10 10 C 1.46505 * 119.99835 * 185.50714 * 9 7 6 11 11 C 1.50702 * 109.46821 * 269.99824 * 10 9 7 12 12 H 1.08000 * 120.00069 * 359.97438 * 11 10 9 13 13 C 1.37883 * 119.99721 * 180.02562 * 11 10 9 14 14 N 1.31511 * 119.99925 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 119.99625 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47386 * 0.02562 * 15 13 11 17 17 H 1.48511 * 109.47000 * 120.00065 * 15 13 11 18 18 H 1.48500 * 109.47158 * 239.99398 * 15 13 11 19 19 C 1.46503 * 120.00328 * 5.50205 * 9 7 6 20 20 C 1.52992 * 109.47305 * 273.85675 * 19 9 7 21 21 C 1.53001 * 117.49829 * 243.74519 * 20 19 9 22 22 C 1.53001 * 117.50265 * 175.08623 * 20 19 9 23 23 H 1.08996 * 109.47333 * 270.18313 * 1 2 3 24 24 H 1.09003 * 109.47026 * 30.18549 * 1 2 3 25 25 H 1.09003 * 109.47029 * 150.18068 * 1 2 3 26 26 H 1.08995 * 109.47371 * 29.99714 * 10 9 7 27 27 H 1.09006 * 109.46945 * 150.00165 * 10 9 7 28 28 H 0.96998 * 119.99350 * 179.97438 * 14 13 11 29 29 H 1.08994 * 109.47217 * 153.84922 * 19 9 7 30 30 H 1.09005 * 109.46452 * 33.85180 * 19 9 7 31 31 H 1.09001 * 115.55196 * 29.40754 * 20 19 9 32 32 H 1.09001 * 117.49870 * 359.97438 * 21 20 19 33 33 H 1.08998 * 117.50190 * 145.01704 * 21 20 19 34 34 H 1.08997 * 117.49872 * 214.97630 * 22 20 19 35 35 H 1.09004 * 117.49127 * 359.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2420 1.0873 0.0000 4 7 3.5121 0.9981 -0.0072 5 16 3.9366 -0.5096 -0.0070 6 6 2.2812 -1.1453 0.0036 7 6 1.8394 -2.5491 0.0086 8 8 0.6585 -2.8155 -0.1087 9 7 2.7434 -3.5396 0.1431 10 6 2.3209 -4.9377 0.0273 11 6 1.9246 -5.4567 1.3855 12 1 1.9822 -4.8100 2.2486 13 6 1.4896 -6.7575 1.5264 14 7 1.4200 -7.5450 0.4754 15 14 0.9991 -7.4010 3.2100 16 1 1.1663 -6.3247 4.2194 17 1 -0.4211 -7.8344 3.1798 18 1 1.8613 -8.5555 3.5691 19 6 4.1486 -3.2184 0.4049 20 6 4.8710 -2.9718 -0.9210 21 6 5.9976 -3.9345 -1.3014 22 6 6.3275 -2.5076 -0.8564 23 1 -0.3634 0.0033 1.0276 24 1 -0.3633 0.8883 -0.5167 25 1 -0.3633 -0.8916 -0.5110 26 1 1.4696 -5.0051 -0.6500 27 1 3.1446 -5.5350 -0.3638 28 1 1.1144 -8.4602 0.5747 29 1 4.6206 -4.0509 0.9265 30 1 4.2073 -2.3223 1.0228 31 1 4.2524 -2.5775 -1.7272 32 1 6.2244 -4.7434 -0.6068 33 1 6.1205 -4.1733 -2.3578 34 1 6.6671 -1.8081 -1.6202 35 1 6.7708 -2.3775 0.1309 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000191497613.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:24 Heat of formation + Delta-G solvation = 66.395382 kcal Electronic energy + Delta-G solvation = -20063.179060 eV Core-core repulsion = 16997.196314 eV Total energy + Delta-G solvation = -3065.982746 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.69064 -39.31936 -37.33352 -34.68539 -33.10811 -32.61197 -29.02925 -27.64455 -26.81506 -26.04224 -23.49345 -22.34214 -21.52739 -20.79591 -18.86017 -18.36551 -16.89419 -16.62206 -15.84015 -15.62398 -15.16424 -14.63793 -14.56924 -13.97736 -13.66655 -13.13587 -12.99141 -12.81818 -12.62643 -12.35051 -12.08964 -11.68522 -11.49126 -11.38691 -11.37779 -10.97998 -10.76883 -10.41443 -10.27151 -10.16074 -9.78924 -9.73927 -9.49930 -9.41653 -9.22607 -8.52608 -7.93759 -6.13950 -4.19038 -0.02828 1.02495 1.72254 2.16233 3.24566 3.32570 3.34937 3.47262 3.50143 3.84190 4.09449 4.37202 4.59590 4.81607 4.86737 4.91178 5.08822 5.21515 5.36353 5.47778 5.52038 5.63811 5.72634 5.78769 5.85366 5.94999 6.14553 6.23092 6.32383 6.85504 7.23507 7.32710 7.81251 7.84941 8.07688 8.10942 8.64224 8.86514 9.46438 10.94233 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.017034 B = 0.006433 C = 0.005105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.396488 B = 4351.353147 C = 5483.528814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.084 3.916 3 N -0.257 5.257 4 N -0.300 5.300 5 S 0.439 5.561 6 C -0.282 4.282 7 C 0.587 3.413 8 O -0.510 6.510 9 N -0.580 5.580 10 C 0.250 3.750 11 C -0.530 4.530 12 H 0.059 0.941 13 C 0.064 3.936 14 N -0.893 5.893 15 Si 0.898 3.102 16 H -0.273 1.273 17 H -0.282 1.282 18 H -0.283 1.283 19 C 0.131 3.869 20 C -0.184 4.184 21 C -0.163 4.163 22 C -0.177 4.177 23 H 0.084 0.916 24 H 0.077 0.923 25 H 0.103 0.897 26 H 0.047 0.953 27 H 0.040 0.960 28 H 0.264 0.736 29 H 0.103 0.897 30 H 0.065 0.935 31 H 0.104 0.896 32 H 0.101 0.899 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.166 10.600 -2.356 13.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.063 4.063 3 N -0.123 5.123 4 N -0.279 5.279 5 S 0.577 5.423 6 C -0.422 4.422 7 C 0.370 3.630 8 O -0.387 6.387 9 N -0.311 5.311 10 C 0.132 3.868 11 C -0.568 4.568 12 H 0.077 0.923 13 C -0.139 4.139 14 N -0.531 5.531 15 Si 0.726 3.274 16 H -0.198 1.198 17 H -0.208 1.208 18 H -0.209 1.209 19 C 0.005 3.995 20 C -0.205 4.205 21 C -0.200 4.200 22 C -0.215 4.215 23 H 0.103 0.897 24 H 0.096 0.904 25 H 0.122 0.878 26 H 0.065 0.935 27 H 0.058 0.942 28 H 0.074 0.926 29 H 0.122 0.878 30 H 0.083 0.917 31 H 0.123 0.877 32 H 0.119 0.881 33 H 0.112 0.888 34 H 0.114 0.886 35 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 9.087 11.423 -2.477 14.805 hybrid contribution -1.457 -1.023 0.908 1.998 sum 7.630 10.400 -1.569 12.994 Atomic orbital electron populations 1.20496 0.84107 1.04805 1.04128 1.22917 1.00119 0.85539 0.97690 1.70711 0.97315 1.28327 1.15993 1.78494 1.09364 1.20046 1.20011 1.83313 1.09896 0.97847 1.51195 1.28213 0.97617 1.01005 1.15410 1.16515 0.86181 0.81486 0.78787 1.90785 1.15692 1.82277 1.49919 1.48140 1.06110 1.08845 1.67975 1.19421 0.96670 0.72708 0.98038 1.21433 1.44828 0.96803 0.93782 0.92261 1.24912 0.95232 0.96652 0.97094 1.69931 1.46888 1.07309 1.29000 0.86442 0.78388 0.78722 0.83888 1.19777 1.20784 1.20909 1.21328 0.82766 1.01286 0.94153 1.22888 0.91452 1.05936 1.00220 1.23032 1.01608 0.93061 1.02297 1.23011 0.96968 0.98263 1.03224 0.89715 0.90376 0.87816 0.93536 0.94182 0.92639 0.87838 0.91702 0.87748 0.88085 0.88802 0.88645 0.88282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.05 9.97 36.01 0.36 -0.69 16 2 C 0.08 1.35 7.00 -82.84 -0.58 0.77 16 3 N -0.26 -4.21 11.54 33.42 0.39 -3.82 16 4 N -0.30 -4.63 12.51 60.35 0.75 -3.88 16 5 S 0.44 5.87 16.61 -107.50 -1.79 4.08 16 6 C -0.28 -4.72 6.42 -35.95 -0.23 -4.95 16 7 C 0.59 11.84 7.62 -12.63 -0.10 11.74 16 8 O -0.51 -11.95 14.51 5.26 0.08 -11.87 16 9 N -0.58 -11.51 2.46 -176.42 -0.43 -11.95 16 10 C 0.25 6.07 5.10 -5.19 -0.03 6.05 16 11 C -0.53 -14.22 9.39 -34.44 -0.32 -14.54 16 12 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 13 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 14 N -0.89 -25.35 13.29 55.43 0.74 -24.61 16 15 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 16 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 17 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 18 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 19 C 0.13 1.98 5.21 -4.04 -0.02 1.96 16 20 C -0.18 -2.31 3.76 -90.62 -0.34 -2.65 16 21 C -0.16 -1.80 10.18 -26.69 -0.27 -2.08 16 22 C -0.18 -1.67 9.62 -26.69 -0.26 -1.93 16 23 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 24 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.10 1.60 6.36 -51.93 -0.33 1.27 16 26 H 0.05 1.27 7.50 -51.93 -0.39 0.89 16 27 H 0.04 0.98 8.07 -51.93 -0.42 0.56 16 28 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 29 H 0.10 1.57 7.78 -51.93 -0.40 1.16 16 30 H 0.07 0.89 5.01 -29.69 -0.15 0.74 16 31 H 0.10 1.40 7.81 -51.93 -0.41 0.99 16 32 H 0.10 1.13 8.03 -51.93 -0.42 0.72 16 33 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 308.89 15.07 4.65 4.65 Total: -1.00 -30.88 308.89 -6.69 -37.57 By element: Atomic # 1 Polarization: 2.62 SS G_CDS: -4.17 Total: -1.55 kcal Atomic # 6 Polarization: -2.80 SS G_CDS: -1.89 Total: -4.69 kcal Atomic # 7 Polarization: -45.70 SS G_CDS: 1.44 Total: -44.26 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: 0.08 Total: -11.87 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 16 Polarization: 5.87 SS G_CDS: -1.79 Total: 4.08 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.88 -6.69 -37.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191497613.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.961 kcal (2) G-P(sol) polarization free energy of solvation -30.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds