Wall clock time and date at job start Tue Mar 31 2020 05:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38234 * 120.00639 * 2 1 4 4 C 1.38216 * 120.01494 * 180.02562 * 3 2 1 5 5 C 1.38265 * 120.02667 * 359.96105 * 4 3 2 6 6 C 1.50693 * 119.99277 * 180.02562 * 5 4 3 7 7 N 1.46908 * 109.46963 * 269.97528 * 6 5 4 8 8 C 1.47474 * 111.00226 * 74.02993 * 7 6 5 9 9 C 1.53507 * 87.93413 * 138.70242 * 8 7 6 10 10 O 1.42898 * 114.16682 * 87.62277 * 9 8 7 11 11 C 1.50699 * 114.34511 * 220.31541 * 9 8 7 12 12 H 1.08003 * 120.00007 * 93.92586 * 11 9 8 13 13 C 1.37882 * 120.00048 * 273.92442 * 11 9 8 14 14 N 1.31513 * 119.99570 * 0.02562 * 13 11 9 15 15 Si 1.86797 * 119.99862 * 179.97438 * 13 11 9 16 16 H 1.48506 * 109.46949 * 90.00259 * 15 13 11 17 17 H 1.48494 * 109.47243 * 209.99919 * 15 13 11 18 18 H 1.48496 * 109.47355 * 330.00113 * 15 13 11 19 19 C 1.47476 * 110.99905 * 170.00367 * 7 6 5 20 20 C 1.38195 * 120.01144 * 0.02562 * 5 4 3 21 21 C 1.38328 * 120.00778 * 180.27377 * 2 1 3 22 22 Cl 1.73604 * 120.01692 * 0.02562 * 21 2 1 23 23 H 1.09000 * 109.47382 * 90.00615 * 1 2 3 24 24 H 1.09010 * 109.46877 * 209.99851 * 1 2 3 25 25 H 1.08998 * 109.47720 * 329.99797 * 1 2 3 26 26 H 1.08001 * 119.99159 * 0.02562 * 3 2 1 27 27 H 1.08007 * 119.98628 * 179.97438 * 4 3 2 28 28 H 1.08999 * 109.47624 * 29.97467 * 6 5 4 29 29 H 1.08997 * 109.47626 * 149.97707 * 6 5 4 30 30 H 1.08998 * 113.47865 * 253.47365 * 8 7 6 31 31 H 1.09000 * 113.47555 * 23.93331 * 8 7 6 32 32 H 0.96708 * 114.00209 * 86.16581 * 10 9 8 33 33 H 0.97010 * 119.99247 * 179.97438 * 14 13 11 34 34 H 1.09005 * 113.48094 * 336.05894 * 19 7 6 35 35 H 1.09003 * 113.48072 * 106.46842 * 19 7 6 36 36 H 1.08002 * 120.00237 * 180.02562 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 3.5805 1.1973 -0.0005 5 6 4.2725 0.0003 -0.0003 6 6 5.7794 0.0014 -0.0003 7 7 6.2691 0.0009 -1.3853 8 6 6.0872 1.3239 -2.0108 9 6 7.4776 1.1563 -2.6394 10 8 7.4731 0.4775 -3.8968 11 6 8.3129 2.4106 -2.6432 12 1 9.0092 2.5981 -1.8391 13 6 8.1884 3.3188 -3.6731 14 7 7.3401 3.0906 -4.6519 15 14 9.2233 4.8738 -3.6774 16 1 10.5005 4.6164 -4.3902 17 1 8.4819 5.9600 -4.3670 18 1 9.5105 5.2811 -2.2786 19 6 7.7234 0.2409 -1.4318 20 6 3.5825 -1.1971 0.0000 21 6 2.1988 -1.1978 -0.0057 22 17 1.3314 -2.7017 -0.0136 23 1 -0.3634 -0.0001 -1.0276 24 1 -0.3633 -0.8901 0.5139 25 1 -0.3634 0.8899 0.5138 26 1 1.6583 2.1324 0.0004 27 1 4.1201 2.1329 -0.0010 28 1 6.1422 0.8920 0.5130 29 1 6.1435 -0.8879 0.5141 30 1 5.2800 1.3509 -2.7428 31 1 6.0316 2.1406 -1.2910 32 1 7.3181 1.0564 -4.6558 33 1 7.2522 3.7298 -5.3764 34 1 8.1047 0.7685 -0.5575 35 1 8.3033 -0.6503 -1.6722 36 1 4.1232 -2.1320 0.0007 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194754637.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:03 Heat of formation + Delta-G solvation = -1.087525 kcal Electronic energy + Delta-G solvation = -19535.969797 eV Core-core repulsion = 16432.724316 eV Total energy + Delta-G solvation = -3103.245482 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.092 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.85051 -38.75956 -36.43729 -34.62504 -33.05553 -32.06049 -30.66423 -29.42221 -26.83269 -25.15013 -24.75628 -22.72967 -22.26647 -20.59066 -18.63617 -17.33885 -16.22494 -15.87089 -15.26900 -15.11966 -15.04021 -14.25222 -14.06826 -13.93304 -13.66961 -13.39573 -12.73594 -12.44166 -12.27596 -12.13359 -12.03056 -11.48478 -11.41682 -11.33159 -11.25505 -11.06785 -10.85315 -10.72552 -10.52262 -10.27069 -10.01982 -9.35704 -8.75806 -8.68528 -8.44263 -8.15998 -7.91704 -6.29406 -4.39522 1.24622 1.35947 2.17175 3.17615 3.25266 3.27492 3.67150 4.22773 4.71806 4.77893 4.89703 4.94974 5.08909 5.20582 5.36793 5.49162 5.52333 5.60234 5.71405 5.82123 5.91825 5.93711 6.05265 6.09996 6.26043 6.31308 6.34999 6.45483 6.66264 6.68077 6.90260 7.03120 7.12535 7.32518 7.74056 7.90669 7.99670 8.62822 9.30885 9.67220 10.76565 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.028078 B = 0.003987 C = 0.003790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.996068 B = 7020.531897 C = 7386.103010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.086 4.086 3 C -0.109 4.109 4 C -0.101 4.101 5 C -0.056 4.056 6 C 0.053 3.947 7 N -0.465 5.465 8 C -0.017 4.017 9 C 0.247 3.753 10 O -0.570 6.570 11 C -0.536 4.536 12 H 0.066 0.934 13 C 0.071 3.929 14 N -0.897 5.897 15 Si 0.904 3.096 16 H -0.277 1.277 17 H -0.284 1.284 18 H -0.272 1.272 19 C 0.002 3.998 20 C -0.089 4.089 21 C -0.037 4.037 22 Cl -0.078 7.078 23 H 0.073 0.927 24 H 0.070 0.930 25 H 0.067 0.933 26 H 0.129 0.871 27 H 0.127 0.873 28 H 0.049 0.951 29 H 0.077 0.923 30 H 0.067 0.933 31 H 0.058 0.942 32 H 0.390 0.610 33 H 0.272 0.728 34 H 0.065 0.935 35 H 0.072 0.928 36 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.736 -4.229 9.849 15.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.087 4.087 3 C -0.128 4.128 4 C -0.119 4.119 5 C -0.057 4.057 6 C -0.075 4.075 7 N -0.187 5.187 8 C -0.147 4.147 9 C 0.205 3.795 10 O -0.382 6.382 11 C -0.574 4.574 12 H 0.084 0.916 13 C -0.131 4.131 14 N -0.538 5.538 15 Si 0.731 3.269 16 H -0.203 1.203 17 H -0.209 1.209 18 H -0.197 1.197 19 C -0.126 4.126 20 C -0.109 4.109 21 C -0.064 4.064 22 Cl -0.049 7.049 23 H 0.091 0.909 24 H 0.089 0.911 25 H 0.086 0.914 26 H 0.147 0.853 27 H 0.145 0.855 28 H 0.067 0.933 29 H 0.095 0.905 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.246 0.754 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -11.076 -5.418 9.776 15.736 hybrid contribution 0.564 1.930 0.079 2.013 sum -10.512 -3.488 9.855 14.825 Atomic orbital electron populations 1.20826 0.90641 1.03017 1.02742 1.19690 0.96454 0.91505 1.01043 1.20928 0.94052 0.96913 1.00875 1.21225 0.94086 0.98176 0.98442 1.19744 0.95807 0.92243 0.97895 1.21654 0.90295 1.01436 0.94104 1.69086 1.08008 1.30518 1.11110 1.24660 1.03304 0.88332 0.98365 1.19357 0.89751 0.88414 0.81932 1.86033 1.94767 1.40273 1.17166 1.21582 1.23482 1.03894 1.08426 0.91551 1.25063 0.94594 0.98500 0.94905 1.69304 1.35584 1.37424 1.11479 0.86404 0.80194 0.81916 0.78396 1.20275 1.20940 1.19718 1.24108 0.89539 0.99823 0.99174 1.20883 0.91477 0.98908 0.99585 1.20728 0.92259 0.86246 1.07148 1.98334 1.76990 1.32592 1.97030 0.90864 0.91106 0.91358 0.85335 0.85457 0.93334 0.90501 0.91415 0.92414 0.75415 0.91796 0.91717 0.90939 0.85029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.16 9.61 36.01 0.35 -0.81 16 2 C -0.09 -1.11 5.88 -104.59 -0.62 -1.72 16 3 C -0.11 -1.42 9.70 -39.59 -0.38 -1.81 16 4 C -0.10 -1.48 9.12 -39.58 -0.36 -1.84 16 5 C -0.06 -0.88 5.18 -104.63 -0.54 -1.42 16 6 C 0.05 0.88 4.98 -4.97 -0.02 0.86 16 7 N -0.46 -9.59 6.40 -246.11 -1.58 -11.16 16 8 C -0.02 -0.39 6.25 -7.56 -0.05 -0.44 16 9 C 0.25 6.21 1.56 -91.24 -0.14 6.07 16 10 O -0.57 -15.54 13.53 -35.23 -0.48 -16.01 16 11 C -0.54 -14.07 8.69 -34.44 -0.30 -14.37 16 12 H 0.07 1.70 7.81 -52.48 -0.41 1.29 16 13 C 0.07 1.85 5.39 -17.82 -0.10 1.76 16 14 N -0.90 -23.88 11.02 55.43 0.61 -23.27 16 15 Si 0.90 20.05 29.54 -169.99 -5.02 15.03 16 16 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 17 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 18 H -0.27 -5.96 7.11 56.52 0.40 -5.55 16 19 C 0.00 0.05 7.12 -7.55 -0.05 -0.01 16 20 C -0.09 -1.33 9.49 -39.55 -0.38 -1.70 16 21 C -0.04 -0.52 6.31 -39.50 -0.25 -0.77 16 22 Cl -0.08 -0.97 27.30 -51.86 -1.42 -2.39 16 23 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.07 0.68 6.92 -51.92 -0.36 0.32 16 25 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 26 H 0.13 1.36 8.06 -52.49 -0.42 0.93 16 27 H 0.13 1.81 7.70 -52.48 -0.40 1.41 16 28 H 0.05 0.78 7.51 -51.93 -0.39 0.39 16 29 H 0.08 1.15 8.09 -51.93 -0.42 0.73 16 30 H 0.07 1.66 8.14 -51.93 -0.42 1.23 16 31 H 0.06 1.26 7.31 -51.93 -0.38 0.88 16 32 H 0.39 10.80 6.33 45.56 0.29 11.09 16 33 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 34 H 0.06 1.28 7.73 -51.93 -0.40 0.88 16 35 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 36 H 0.13 1.86 8.06 -52.49 -0.42 1.43 16 LS Contribution 314.74 15.07 4.74 4.74 Total: -1.00 -27.62 314.74 -10.12 -37.75 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: -4.14 Total: 11.50 kcal Atomic # 6 Polarization: -13.35 SS G_CDS: -2.84 Total: -16.19 kcal Atomic # 7 Polarization: -33.46 SS G_CDS: -0.97 Total: -34.43 kcal Atomic # 8 Polarization: -15.54 SS G_CDS: -0.48 Total: -16.01 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Atomic # 17 Polarization: -0.97 SS G_CDS: -1.42 Total: -2.39 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -27.62 -10.12 -37.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194754637.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.661 kcal (2) G-P(sol) polarization free energy of solvation -27.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds