Wall clock time and date at job start Tue Mar 31 2020 05:10:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38234 * 120.00639 * 2 1 4 4 C 1.38216 * 120.01494 * 180.02562 * 3 2 1 5 5 C 1.38265 * 120.02667 * 359.96105 * 4 3 2 6 6 C 1.50693 * 119.99277 * 180.02562 * 5 4 3 7 7 N 1.46908 * 109.46963 * 269.97528 * 6 5 4 8 8 C 1.47474 * 111.00226 * 74.02993 * 7 6 5 9 9 C 1.53507 * 87.93413 * 138.70242 * 8 7 6 10 10 O 1.42898 * 114.16682 * 87.62277 * 9 8 7 11 11 C 1.50699 * 114.34511 * 220.31541 * 9 8 7 12 12 H 1.08003 * 120.00007 * 93.92586 * 11 9 8 13 13 C 1.37882 * 120.00048 * 273.92442 * 11 9 8 14 14 N 1.31513 * 119.99570 * 0.02562 * 13 11 9 15 15 Si 1.86797 * 119.99862 * 179.97438 * 13 11 9 16 16 H 1.48506 * 109.46949 * 90.00259 * 15 13 11 17 17 H 1.48494 * 109.47243 * 209.99919 * 15 13 11 18 18 H 1.48496 * 109.47355 * 330.00113 * 15 13 11 19 19 C 1.47476 * 110.99905 * 170.00367 * 7 6 5 20 20 C 1.38195 * 120.01144 * 0.02562 * 5 4 3 21 21 C 1.38328 * 120.00778 * 180.27377 * 2 1 3 22 22 Cl 1.73604 * 120.01692 * 0.02562 * 21 2 1 23 23 H 1.09000 * 109.47382 * 90.00615 * 1 2 3 24 24 H 1.09010 * 109.46877 * 209.99851 * 1 2 3 25 25 H 1.08998 * 109.47720 * 329.99797 * 1 2 3 26 26 H 1.08001 * 119.99159 * 0.02562 * 3 2 1 27 27 H 1.08007 * 119.98628 * 179.97438 * 4 3 2 28 28 H 1.08999 * 109.47624 * 29.97467 * 6 5 4 29 29 H 1.08997 * 109.47626 * 149.97707 * 6 5 4 30 30 H 1.08998 * 113.47865 * 253.47365 * 8 7 6 31 31 H 1.09000 * 113.47555 * 23.93331 * 8 7 6 32 32 H 0.96708 * 114.00209 * 86.16581 * 10 9 8 33 33 H 0.97010 * 119.99247 * 179.97438 * 14 13 11 34 34 H 1.09005 * 113.48094 * 336.05894 * 19 7 6 35 35 H 1.09003 * 113.48072 * 106.46842 * 19 7 6 36 36 H 1.08002 * 120.00237 * 180.02562 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 3.5805 1.1973 -0.0005 5 6 4.2725 0.0003 -0.0003 6 6 5.7794 0.0014 -0.0003 7 7 6.2691 0.0009 -1.3853 8 6 6.0872 1.3239 -2.0108 9 6 7.4776 1.1563 -2.6394 10 8 7.4731 0.4775 -3.8968 11 6 8.3129 2.4106 -2.6432 12 1 9.0092 2.5981 -1.8391 13 6 8.1884 3.3188 -3.6731 14 7 7.3401 3.0906 -4.6519 15 14 9.2233 4.8738 -3.6774 16 1 10.5005 4.6164 -4.3902 17 1 8.4819 5.9600 -4.3670 18 1 9.5105 5.2811 -2.2786 19 6 7.7234 0.2409 -1.4318 20 6 3.5825 -1.1971 0.0000 21 6 2.1988 -1.1978 -0.0057 22 17 1.3314 -2.7017 -0.0136 23 1 -0.3634 -0.0001 -1.0276 24 1 -0.3633 -0.8901 0.5139 25 1 -0.3634 0.8899 0.5138 26 1 1.6583 2.1324 0.0004 27 1 4.1201 2.1329 -0.0010 28 1 6.1422 0.8920 0.5130 29 1 6.1435 -0.8879 0.5141 30 1 5.2800 1.3509 -2.7428 31 1 6.0316 2.1406 -1.2910 32 1 7.3181 1.0564 -4.6558 33 1 7.2522 3.7298 -5.3764 34 1 8.1047 0.7685 -0.5575 35 1 8.3033 -0.6503 -1.6722 36 1 4.1232 -2.1320 0.0007 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194754637.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:02 Heat of formation + Delta-G solvation = -19.258473 kcal Electronic energy + Delta-G solvation = -19536.757749 eV Core-core repulsion = 16432.724316 eV Total energy + Delta-G solvation = -3104.033433 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.092 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.27492 -40.13418 -37.48419 -36.38363 -34.32581 -34.05927 -31.73195 -30.79116 -28.42233 -26.79772 -26.32309 -23.86741 -23.68957 -21.76280 -20.48571 -19.26597 -17.42862 -17.11091 -16.92490 -16.78120 -16.31939 -15.88924 -15.64615 -15.04270 -14.97189 -14.63216 -14.24320 -13.90099 -13.52568 -13.35376 -13.29530 -13.26061 -12.85765 -12.78327 -12.53986 -12.39340 -12.26211 -12.19298 -12.15625 -11.86391 -11.58243 -11.17152 -10.64383 -10.10919 -9.79307 -9.72963 -9.43580 -8.24854 -6.42919 0.15843 0.28080 1.13432 1.43111 1.45340 1.55045 2.37521 2.56696 2.96375 3.33909 3.62636 3.79098 3.94197 4.01940 4.16805 4.23914 4.27496 4.33686 4.46790 4.56317 4.63221 4.71528 4.77021 4.78986 4.91300 4.92248 5.15664 5.17594 5.25271 5.38066 5.39038 5.42655 5.60205 5.75707 5.84680 5.97048 6.31064 6.63470 7.30579 7.56079 8.80411 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.028078 B = 0.003987 C = 0.003790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.996068 B = 7020.531897 C = 7386.103010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.085 4.085 3 C -0.110 4.110 4 C -0.112 4.112 5 C -0.076 4.076 6 C 0.056 3.944 7 N -0.472 5.472 8 C 0.001 3.999 9 C 0.216 3.784 10 O -0.585 6.585 11 C -0.557 4.557 12 H 0.068 0.932 13 C 0.027 3.973 14 N -0.921 5.921 15 Si 0.968 3.032 16 H -0.276 1.276 17 H -0.280 1.280 18 H -0.265 1.265 19 C 0.012 3.988 20 C -0.099 4.099 21 C -0.049 4.049 22 Cl -0.067 7.067 23 H 0.079 0.921 24 H 0.074 0.926 25 H 0.088 0.912 26 H 0.155 0.845 27 H 0.127 0.873 28 H 0.055 0.945 29 H 0.093 0.907 30 H 0.042 0.958 31 H 0.063 0.937 32 H 0.383 0.617 33 H 0.274 0.726 34 H 0.083 0.917 35 H 0.071 0.929 36 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.537 -3.607 11.015 16.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.086 4.086 3 C -0.128 4.128 4 C -0.131 4.131 5 C -0.077 4.077 6 C -0.072 4.072 7 N -0.194 5.194 8 C -0.128 4.128 9 C 0.175 3.825 10 O -0.397 6.397 11 C -0.595 4.595 12 H 0.086 0.914 13 C -0.172 4.172 14 N -0.562 5.562 15 Si 0.793 3.207 16 H -0.202 1.202 17 H -0.206 1.206 18 H -0.189 1.189 19 C -0.117 4.117 20 C -0.119 4.119 21 C -0.075 4.075 22 Cl -0.038 7.038 23 H 0.097 0.903 24 H 0.093 0.907 25 H 0.107 0.893 26 H 0.172 0.828 27 H 0.145 0.855 28 H 0.074 0.926 29 H 0.112 0.888 30 H 0.060 0.940 31 H 0.081 0.919 32 H 0.238 0.762 33 H 0.084 0.916 34 H 0.101 0.899 35 H 0.089 0.911 36 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -11.881 -4.813 10.962 16.867 hybrid contribution 0.738 1.671 -0.268 1.846 sum -11.143 -3.142 10.695 15.762 Atomic orbital electron populations 1.20899 0.88450 1.04303 1.03464 1.20083 0.98102 0.91013 0.99447 1.21240 0.93506 0.98177 0.99865 1.21361 0.95090 0.97851 0.98805 1.19707 0.95217 0.93021 0.99736 1.21671 0.91240 1.02545 0.91711 1.68976 1.07376 1.29061 1.14004 1.24338 1.00837 0.89734 0.97903 1.19782 0.91426 0.89328 0.82008 1.86014 1.94995 1.40758 1.17945 1.21857 1.24017 1.04693 1.08926 0.91362 1.25823 0.95556 1.01355 0.94487 1.69386 1.36565 1.38338 1.11905 0.85396 0.78433 0.78251 0.78597 1.20179 1.20572 1.18942 1.24018 0.90347 0.99145 0.98144 1.20967 0.92186 0.98772 0.99945 1.20890 0.92187 0.87266 1.07195 1.98334 1.76587 1.31916 1.96974 0.90258 0.90718 0.89270 0.82751 0.85506 0.92640 0.88845 0.93968 0.91857 0.76214 0.91600 0.89948 0.91056 0.84870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.98 9.61 71.24 0.68 -1.30 16 2 C -0.09 -2.03 5.88 -19.84 -0.12 -2.15 16 3 C -0.11 -2.64 9.70 22.26 0.22 -2.43 16 4 C -0.11 -3.19 9.12 22.27 0.20 -2.99 16 5 C -0.08 -2.33 5.18 -19.87 -0.10 -2.43 16 6 C 0.06 1.81 4.98 85.55 0.43 2.23 16 7 N -0.47 -19.31 6.40 -932.93 -5.97 -25.28 16 8 C 0.00 0.07 6.25 83.57 0.52 0.59 16 9 C 0.22 10.94 1.56 -11.20 -0.02 10.92 16 10 O -0.59 -32.66 13.53 -148.98 -2.02 -34.68 16 11 C -0.56 -29.28 8.69 25.60 0.22 -29.06 16 12 H 0.07 3.46 7.81 -2.91 -0.02 3.44 16 13 C 0.03 1.42 5.39 84.66 0.46 1.88 16 14 N -0.92 -49.51 11.02 21.45 0.24 -49.27 16 15 Si 0.97 40.80 29.54 68.60 2.03 42.82 16 16 H -0.28 -11.52 7.11 99.48 0.71 -10.82 16 17 H -0.28 -11.56 7.11 99.48 0.71 -10.85 16 18 H -0.27 -10.76 7.11 99.48 0.71 -10.06 16 19 C 0.01 0.51 7.12 83.57 0.60 1.11 16 20 C -0.10 -2.88 9.49 22.29 0.21 -2.67 16 21 C -0.05 -1.29 6.31 22.32 0.14 -1.15 16 22 Cl -0.07 -1.56 27.30 -2.72 -0.07 -1.64 16 23 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 24 H 0.07 1.24 6.92 -2.38 -0.02 1.22 16 25 H 0.09 1.18 8.09 -2.39 -0.02 1.16 16 26 H 0.15 2.82 8.06 -2.91 -0.02 2.80 16 27 H 0.13 3.52 7.70 -2.91 -0.02 3.50 16 28 H 0.06 1.71 7.51 -2.39 -0.02 1.69 16 29 H 0.09 2.67 8.09 -2.39 -0.02 2.65 16 30 H 0.04 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.06 2.77 7.31 -2.39 -0.02 2.75 16 32 H 0.38 21.91 6.33 -74.05 -0.47 21.44 16 33 H 0.27 13.90 8.31 -92.70 -0.77 13.12 16 34 H 0.08 3.17 7.73 -2.38 -0.02 3.15 16 35 H 0.07 3.02 8.14 -2.39 -0.02 3.00 16 36 H 0.13 3.68 8.06 -2.91 -0.02 3.66 16 Total: -1.00 -58.50 314.74 -1.74 -60.24 By element: Atomic # 1 Polarization: 34.62 SS G_CDS: 0.62 Total: 35.25 kcal Atomic # 6 Polarization: -30.88 SS G_CDS: 3.44 Total: -27.44 kcal Atomic # 7 Polarization: -68.82 SS G_CDS: -5.74 Total: -74.55 kcal Atomic # 8 Polarization: -32.66 SS G_CDS: -2.02 Total: -34.68 kcal Atomic # 14 Polarization: 40.80 SS G_CDS: 2.03 Total: 42.82 kcal Atomic # 17 Polarization: -1.56 SS G_CDS: -0.07 Total: -1.64 kcal Total: -58.50 -1.74 -60.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194754637.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.978 kcal (2) G-P(sol) polarization free energy of solvation -58.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds