Wall clock time and date at job start Tue Mar 31 2020 05:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38236 * 120.00564 * 2 1 4 4 C 1.38221 * 120.01063 * 179.97438 * 3 2 1 5 5 C 1.38258 * 120.02645 * 0.02562 * 4 3 2 6 6 C 1.50700 * 119.99358 * 179.97438 * 5 4 3 7 7 C 1.50702 * 109.46869 * 90.00024 * 6 5 4 8 8 O 1.21283 * 120.00262 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99928 * 179.72354 * 7 6 5 10 10 C 1.46506 * 120.00264 * 0.28128 * 9 7 6 11 11 C 1.46499 * 120.00199 * 180.27479 * 9 7 6 12 12 C 1.50697 * 109.46949 * 90.00203 * 11 9 7 13 13 H 1.08004 * 120.00186 * 0.02562 * 12 11 9 14 14 C 1.37881 * 120.00081 * 180.02562 * 12 11 9 15 15 N 1.31519 * 120.00096 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 120.00103 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.46927 * 59.99717 * 16 14 12 18 18 H 1.48496 * 109.47287 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47040 * 299.99940 * 16 14 12 20 20 C 1.38190 * 120.01626 * 0.23503 * 5 4 3 21 21 C 1.38323 * 120.00374 * 179.97438 * 2 1 3 22 22 Cl 1.73598 * 120.01730 * 0.04541 * 21 2 1 23 23 H 1.09000 * 109.47334 * 89.99776 * 1 2 3 24 24 H 1.09001 * 109.46941 * 210.00453 * 1 2 3 25 25 H 1.09002 * 109.46766 * 329.99768 * 1 2 3 26 26 H 1.07997 * 119.99210 * 359.95694 * 3 2 1 27 27 H 1.07997 * 119.98347 * 179.97438 * 4 3 2 28 28 H 1.09004 * 109.47210 * 330.00318 * 6 5 4 29 29 H 1.08994 * 109.47551 * 209.99970 * 6 5 4 30 30 H 1.08998 * 109.46921 * 89.99095 * 10 9 7 31 31 H 1.08994 * 109.46996 * 209.99677 * 10 9 7 32 32 H 1.09001 * 109.46578 * 329.99540 * 10 9 7 33 33 H 1.09001 * 109.47567 * 210.00057 * 11 9 7 34 34 H 1.09005 * 109.47076 * 330.00563 * 11 9 7 35 35 H 0.96991 * 119.99957 * 180.02562 * 15 14 12 36 36 H 1.07993 * 120.01193 * 179.74436 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2725 0.0002 0.0005 6 6 5.7795 0.0012 0.0005 7 6 6.2818 0.0016 1.4214 8 8 5.4936 0.0006 2.3432 9 7 7.6068 -0.0032 1.6677 10 6 8.5590 -0.0025 0.5542 11 6 8.0951 -0.0090 3.0489 12 6 8.2583 -1.4317 3.5180 13 1 8.0223 -2.2499 2.8536 14 6 8.7089 -1.6891 4.7955 15 7 8.9958 -0.6928 5.6048 16 14 8.9119 -3.4527 5.3767 17 1 9.8887 -4.1522 4.5040 18 1 9.4068 -3.4586 6.7768 19 1 7.6021 -4.1493 5.3112 20 6 3.5826 -1.1971 -0.0049 21 6 2.1987 -1.1979 0.0005 22 17 1.3313 -2.7016 0.0000 23 1 -0.3634 0.0000 -1.0277 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3633 0.8900 0.5139 26 1 1.6583 2.1324 -0.0007 27 1 4.1202 2.1327 0.0001 28 1 6.1423 0.8915 -0.5133 29 1 6.1435 -0.8884 -0.5132 30 1 8.7980 1.0254 0.2813 31 1 9.4699 -0.5199 0.8549 32 1 8.1171 -0.5123 -0.3019 33 1 9.0569 0.5018 3.0965 34 1 7.3786 0.5050 3.6898 35 1 9.3132 -0.8739 6.5032 36 1 4.1231 -2.1320 -0.0091 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259564684.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:29 Heat of formation + Delta-G solvation = -27.288117 kcal Electronic energy + Delta-G solvation = -19231.560137 eV Core-core repulsion = 16127.178512 eV Total energy + Delta-G solvation = -3104.381625 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.092 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.83522 -38.57419 -36.43552 -34.82926 -33.69277 -32.58322 -30.70595 -29.88362 -27.72622 -25.98242 -25.10450 -22.81662 -22.67597 -20.94014 -18.47922 -16.57294 -16.41312 -16.21507 -15.96236 -15.32825 -15.06105 -14.53408 -14.22206 -14.08952 -13.70940 -12.88287 -12.80091 -12.75707 -12.36755 -12.33225 -12.16663 -11.86257 -11.65818 -11.53672 -11.27719 -11.17644 -11.15416 -10.88585 -10.70730 -10.53578 -10.15276 -9.64236 -9.02659 -8.74318 -8.43162 -8.39764 -7.64542 -6.03828 -4.08680 1.21049 1.31909 2.16959 3.32247 3.36824 3.37672 3.44487 3.57210 4.08169 4.45779 4.66140 4.74286 4.91616 5.10322 5.23382 5.28983 5.33035 5.40910 5.49155 5.53974 5.60102 5.64234 5.76347 5.88157 5.93231 6.04239 6.19374 6.24534 6.39667 6.57190 6.84760 7.05627 7.44189 7.53674 7.92398 8.23712 8.40816 8.90283 9.09440 9.56446 11.04265 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.019161 B = 0.004313 C = 0.003857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.931652 B = 6490.681318 C = 7258.166591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.084 4.084 3 C -0.109 4.109 4 C -0.097 4.097 5 C -0.047 4.047 6 C -0.105 4.105 7 C 0.504 3.496 8 O -0.532 6.532 9 N -0.604 5.604 10 C 0.082 3.918 11 C 0.246 3.754 12 C -0.527 4.527 13 H 0.056 0.944 14 C 0.062 3.938 15 N -0.895 5.895 16 Si 0.897 3.103 17 H -0.277 1.277 18 H -0.286 1.286 19 H -0.276 1.276 20 C -0.091 4.091 21 C -0.033 4.033 22 Cl -0.076 7.076 23 H 0.071 0.929 24 H 0.071 0.929 25 H 0.069 0.931 26 H 0.129 0.871 27 H 0.126 0.874 28 H 0.098 0.902 29 H 0.098 0.902 30 H 0.044 0.956 31 H 0.074 0.926 32 H 0.057 0.943 33 H 0.032 0.968 34 H 0.043 0.957 35 H 0.264 0.736 36 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.194 2.852 -16.032 19.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.085 4.085 3 C -0.127 4.127 4 C -0.115 4.115 5 C -0.047 4.047 6 C -0.145 4.145 7 C 0.290 3.710 8 O -0.409 6.409 9 N -0.336 5.336 10 C -0.062 4.062 11 C 0.127 3.873 12 C -0.566 4.566 13 H 0.075 0.925 14 C -0.140 4.140 15 N -0.534 5.534 16 Si 0.725 3.275 17 H -0.202 1.202 18 H -0.211 1.211 19 H -0.202 1.202 20 C -0.110 4.110 21 C -0.060 4.060 22 Cl -0.047 7.047 23 H 0.090 0.910 24 H 0.090 0.910 25 H 0.088 0.912 26 H 0.147 0.853 27 H 0.144 0.856 28 H 0.116 0.884 29 H 0.117 0.883 30 H 0.063 0.937 31 H 0.093 0.907 32 H 0.076 0.924 33 H 0.050 0.950 34 H 0.061 0.939 35 H 0.073 0.927 36 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -11.598 2.761 -15.326 19.417 hybrid contribution 0.315 -1.166 0.429 1.282 sum -11.283 1.595 -14.897 18.756 Atomic orbital electron populations 1.20832 0.90591 1.03353 1.02492 1.19693 0.96494 0.91499 1.00843 1.20892 0.93993 0.96900 1.00925 1.21060 0.94103 0.97735 0.98651 1.19291 0.94504 0.92622 0.98333 1.20782 0.91922 1.04666 0.97110 1.20141 0.82846 0.77991 0.89987 1.90704 1.54741 1.49448 1.46038 1.48167 1.04656 1.71546 1.09274 1.21653 0.94582 1.00429 0.89509 1.19279 0.94953 0.97474 0.75628 1.21395 1.44371 0.92276 0.98547 0.92549 1.24932 0.95309 0.97432 0.96373 1.69920 1.45046 1.30895 1.07556 0.86568 0.78521 0.84716 0.77688 1.20239 1.21142 1.20160 1.20871 0.91836 0.98767 0.99546 1.20685 0.92191 0.86398 1.06698 1.98340 1.76897 1.32470 1.96984 0.91002 0.90968 0.91250 0.85302 0.85574 0.88370 0.88330 0.93718 0.90739 0.92434 0.95023 0.93868 0.92658 0.85112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.13 9.62 36.01 0.35 -0.79 16 2 C -0.08 -1.07 5.88 -104.59 -0.62 -1.68 16 3 C -0.11 -1.32 9.70 -39.59 -0.38 -1.70 16 4 C -0.10 -1.29 9.70 -39.58 -0.38 -1.68 16 5 C -0.05 -0.69 4.37 -104.63 -0.46 -1.15 16 6 C -0.10 -1.49 4.38 -29.03 -0.13 -1.62 16 7 C 0.50 10.32 7.67 -10.98 -0.08 10.24 16 8 O -0.53 -13.49 15.61 5.55 0.09 -13.41 16 9 N -0.60 -12.64 2.86 -182.95 -0.52 -13.16 16 10 C 0.08 1.25 10.25 59.85 0.61 1.86 16 11 C 0.25 6.45 5.16 -5.20 -0.03 6.43 16 12 C -0.53 -15.05 9.39 -34.44 -0.32 -15.38 16 13 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16 14 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 15 N -0.90 -26.80 13.29 55.43 0.74 -26.06 16 16 Si 0.90 22.05 29.54 -169.99 -5.02 17.03 16 17 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 19 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 20 C -0.09 -1.37 9.49 -39.55 -0.38 -1.74 16 21 C -0.03 -0.47 6.31 -39.50 -0.25 -0.72 16 22 Cl -0.08 -0.98 27.30 -51.86 -1.42 -2.39 16 23 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 24 H 0.07 0.73 6.90 -51.93 -0.36 0.37 16 25 H 0.07 0.58 8.09 -51.93 -0.42 0.16 16 26 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 27 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 28 H 0.10 1.10 8.05 -51.93 -0.42 0.69 16 29 H 0.10 1.21 7.34 -51.93 -0.38 0.83 16 30 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 1.18 8.07 -51.93 -0.42 0.76 16 32 H 0.06 0.69 6.43 -51.93 -0.33 0.36 16 33 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 34 H 0.04 1.28 7.42 -51.93 -0.39 0.90 16 35 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 36 H 0.13 1.88 8.06 -52.49 -0.42 1.46 16 LS Contribution 324.24 15.07 4.89 4.89 Total: -1.00 -33.86 324.24 -8.21 -42.07 By element: Atomic # 1 Polarization: 2.07 SS G_CDS: -4.79 Total: -2.73 kcal Atomic # 6 Polarization: -4.07 SS G_CDS: -2.16 Total: -6.24 kcal Atomic # 7 Polarization: -39.44 SS G_CDS: 0.21 Total: -39.23 kcal Atomic # 8 Polarization: -13.49 SS G_CDS: 0.09 Total: -13.41 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Atomic # 17 Polarization: -0.98 SS G_CDS: -1.42 Total: -2.39 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -33.86 -8.21 -42.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259564684.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.783 kcal (2) G-P(sol) polarization free energy of solvation -33.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds