Wall clock time and date at job start Tue Mar 31 2020 05:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38236 * 120.00564 * 2 1 4 4 C 1.38221 * 120.01063 * 179.97438 * 3 2 1 5 5 C 1.38258 * 120.02645 * 0.02562 * 4 3 2 6 6 C 1.50700 * 119.99358 * 179.97438 * 5 4 3 7 7 C 1.50702 * 109.46869 * 90.00024 * 6 5 4 8 8 O 1.21283 * 120.00262 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99928 * 179.72354 * 7 6 5 10 10 C 1.46499 * 120.00199 * 180.27479 * 9 7 6 11 11 C 1.52997 * 109.47555 * 180.02562 * 10 9 7 12 12 C 1.50694 * 109.47460 * 180.02562 * 11 10 9 13 13 H 1.08002 * 120.00179 * 359.97438 * 12 11 10 14 14 C 1.37879 * 120.00472 * 180.02562 * 12 11 10 15 15 N 1.31514 * 119.99350 * 359.97438 * 14 12 11 16 16 Si 1.86789 * 120.00458 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47135 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47491 * 119.99896 * 16 14 12 19 19 H 1.48511 * 109.47242 * 239.99873 * 16 14 12 20 20 C 1.38190 * 120.01626 * 0.23503 * 5 4 3 21 21 C 1.38323 * 120.00374 * 179.97438 * 2 1 3 22 22 Cl 1.73598 * 120.01730 * 0.04541 * 21 2 1 23 23 H 1.09000 * 109.47334 * 89.99776 * 1 2 3 24 24 H 1.09001 * 109.46941 * 210.00453 * 1 2 3 25 25 H 1.09002 * 109.46766 * 329.99768 * 1 2 3 26 26 H 1.07997 * 119.99210 * 359.95694 * 3 2 1 27 27 H 1.07997 * 119.98347 * 179.97438 * 4 3 2 28 28 H 1.09004 * 109.47210 * 330.00318 * 6 5 4 29 29 H 1.08994 * 109.47551 * 209.99970 * 6 5 4 30 30 H 0.97000 * 120.00317 * 0.28382 * 9 7 6 31 31 H 1.08998 * 109.47134 * 300.00670 * 10 9 7 32 32 H 1.09002 * 109.46857 * 59.99862 * 10 9 7 33 33 H 1.08998 * 109.47382 * 300.00439 * 11 10 9 34 34 H 1.09005 * 109.46800 * 60.00640 * 11 10 9 35 35 H 0.97005 * 119.99661 * 179.97438 * 15 14 12 36 36 H 1.07993 * 120.01193 * 179.74436 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2725 0.0002 0.0005 6 6 5.7795 0.0012 0.0005 7 6 6.2818 0.0016 1.4214 8 8 5.4936 0.0006 2.3432 9 7 7.6068 -0.0032 1.6677 10 6 8.0951 -0.0090 3.0489 11 6 9.6251 -0.0129 3.0490 12 6 10.1274 -0.0195 4.4698 13 1 9.4256 -0.0203 5.2907 14 6 11.4829 -0.0234 4.7219 15 7 12.3375 -0.0219 3.7223 16 14 12.1055 -0.0323 6.4829 17 1 10.9504 -0.0332 7.4163 18 1 12.9280 -1.2475 6.7112 19 1 12.9331 1.1776 6.7215 20 6 3.5826 -1.1971 -0.0049 21 6 2.1987 -1.1979 0.0005 22 17 1.3313 -2.7016 0.0000 23 1 -0.3634 0.0000 -1.0277 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3633 0.8900 0.5139 26 1 1.6583 2.1324 -0.0007 27 1 4.1202 2.1327 0.0001 28 1 6.1423 0.8915 -0.5133 29 1 6.1435 -0.8884 -0.5132 30 1 8.2372 -0.0027 0.9305 31 1 7.7344 0.8804 3.5655 32 1 7.7291 -0.8995 3.5599 33 1 9.9862 -0.9021 2.5323 34 1 9.9908 0.8779 2.5382 35 1 13.2912 -0.0243 3.8996 36 1 4.1231 -2.1320 -0.0091 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259581029.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:31 Heat of formation + Delta-G solvation = -45.108321 kcal Electronic energy + Delta-G solvation = -18459.203046 eV Core-core repulsion = 15354.048679 eV Total energy + Delta-G solvation = -3105.154367 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.092 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.05560 -38.83224 -36.60858 -34.92286 -33.86317 -32.85974 -30.89212 -30.45302 -29.11175 -25.86917 -24.36619 -22.98693 -21.51203 -20.89267 -20.01984 -16.86363 -16.64895 -16.23632 -16.19633 -15.49930 -14.92965 -14.89907 -14.48764 -14.28305 -13.93183 -13.37825 -13.23737 -13.02942 -12.63836 -12.53473 -12.31479 -11.91306 -11.74620 -11.47713 -11.34945 -11.21636 -11.05772 -10.87818 -10.63854 -10.35437 -9.83066 -9.51304 -9.23475 -8.94290 -8.61961 -8.56520 -8.37472 -6.11482 -4.14183 1.01921 1.12716 1.99796 2.97647 3.27135 3.33159 3.35400 3.40492 3.84168 4.40635 4.44841 4.56796 4.72277 4.92840 5.06614 5.20042 5.23254 5.25806 5.35287 5.37603 5.43755 5.54925 5.71548 5.87771 6.04892 6.22678 6.31927 6.32820 6.36686 6.66857 6.71994 6.89584 7.49667 7.59357 7.86978 7.98846 8.25898 8.63322 8.92159 9.50892 11.00180 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.034686 B = 0.002707 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.047859 B =10342.885382 C =10539.878449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.082 4.082 3 C -0.108 4.108 4 C -0.096 4.096 5 C -0.051 4.051 6 C -0.106 4.106 7 C 0.505 3.495 8 O -0.542 6.542 9 N -0.723 5.723 10 C 0.122 3.878 11 C 0.012 3.988 12 C -0.521 4.521 13 H 0.060 0.940 14 C 0.058 3.942 15 N -0.894 5.894 16 Si 0.896 3.104 17 H -0.271 1.271 18 H -0.283 1.283 19 H -0.283 1.283 20 C -0.092 4.092 21 C -0.035 4.035 22 Cl -0.074 7.074 23 H 0.073 0.927 24 H 0.072 0.928 25 H 0.069 0.931 26 H 0.130 0.870 27 H 0.128 0.872 28 H 0.104 0.896 29 H 0.103 0.897 30 H 0.398 0.602 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.022 0.978 34 H 0.022 0.978 35 H 0.262 0.738 36 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.019 0.280 -13.059 23.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.082 4.082 3 C -0.127 4.127 4 C -0.114 4.114 5 C -0.052 4.052 6 C -0.146 4.146 7 C 0.290 3.710 8 O -0.420 6.420 9 N -0.373 5.373 10 C 0.000 4.000 11 C -0.025 4.025 12 C -0.560 4.560 13 H 0.078 0.922 14 C -0.143 4.143 15 N -0.533 5.533 16 Si 0.724 3.276 17 H -0.196 1.196 18 H -0.209 1.209 19 H -0.209 1.209 20 C -0.111 4.111 21 C -0.061 4.061 22 Cl -0.045 7.045 23 H 0.091 0.909 24 H 0.091 0.909 25 H 0.088 0.912 26 H 0.148 0.852 27 H 0.146 0.854 28 H 0.123 0.877 29 H 0.121 0.879 30 H 0.231 0.769 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.041 0.959 34 H 0.041 0.959 35 H 0.071 0.929 36 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -20.467 0.138 -12.401 23.931 hybrid contribution 0.862 -0.159 0.605 1.065 sum -19.605 -0.021 -11.796 22.880 Atomic orbital electron populations 1.20850 0.90473 1.03427 1.02656 1.19731 0.96606 0.91490 1.00417 1.20925 0.94002 0.97006 1.00718 1.21090 0.94167 0.97780 0.98408 1.19229 0.94252 0.92707 0.99034 1.20728 0.92272 1.05490 0.96089 1.20384 0.82911 0.77107 0.90598 1.90710 1.55365 1.49700 1.46207 1.46336 1.06218 1.73948 1.10822 1.21716 0.97938 1.00762 0.79625 1.19326 0.87167 0.97832 0.98183 1.21095 0.91792 1.51204 0.91899 0.92214 1.25000 0.96921 0.94981 0.97424 1.69965 1.02133 1.50489 1.30743 0.86459 0.78903 0.77633 0.84593 1.19570 1.20910 1.20919 1.20861 0.91871 0.98671 0.99694 1.20700 0.92214 0.86527 1.06679 1.98347 1.76874 1.32289 1.96964 0.90857 0.90911 0.91163 0.85171 0.85435 0.87746 0.87855 0.76864 0.92618 0.92608 0.95935 0.95939 0.92889 0.85073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.96 9.62 36.01 0.35 -0.61 16 2 C -0.08 -0.87 5.88 -104.59 -0.62 -1.49 16 3 C -0.11 -1.11 9.70 -39.59 -0.38 -1.49 16 4 C -0.10 -1.07 9.70 -39.58 -0.38 -1.46 16 5 C -0.05 -0.62 4.37 -104.63 -0.46 -1.08 16 6 C -0.11 -1.17 5.83 -29.03 -0.17 -1.34 16 7 C 0.51 8.13 7.82 -10.98 -0.09 8.05 16 8 O -0.54 -11.05 16.03 5.55 0.09 -10.96 16 9 N -0.72 -12.07 5.56 -60.29 -0.33 -12.41 16 10 C 0.12 2.56 5.61 -4.04 -0.02 2.54 16 11 C 0.01 0.30 5.09 -27.89 -0.14 0.16 16 12 C -0.52 -14.41 9.11 -34.44 -0.31 -14.73 16 13 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 14 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 15 N -0.89 -25.99 13.29 55.43 0.74 -25.26 16 16 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 17 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 C -0.09 -1.13 9.49 -39.55 -0.38 -1.51 16 21 C -0.03 -0.41 6.31 -39.50 -0.25 -0.66 16 22 Cl -0.07 -0.80 27.30 -51.86 -1.42 -2.22 16 23 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 24 H 0.07 0.61 6.90 -51.93 -0.36 0.25 16 25 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 26 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 27 H 0.13 1.21 8.06 -52.49 -0.42 0.78 16 28 H 0.10 0.89 8.09 -51.93 -0.42 0.47 16 29 H 0.10 0.92 8.08 -51.93 -0.42 0.50 16 30 H 0.40 5.58 8.47 -40.82 -0.35 5.24 16 31 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 36 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 LS Contribution 327.59 15.07 4.94 4.94 Total: -1.00 -32.32 327.59 -8.85 -41.17 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: -4.89 Total: 0.51 kcal Atomic # 6 Polarization: -9.13 SS G_CDS: -2.95 Total: -12.08 kcal Atomic # 7 Polarization: -38.07 SS G_CDS: 0.40 Total: -37.67 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: 0.09 Total: -10.96 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 17 Polarization: -0.80 SS G_CDS: -1.42 Total: -2.22 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.32 -8.85 -41.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259581029.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.943 kcal (2) G-P(sol) polarization free energy of solvation -32.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds