Wall clock time and date at job start Tue Mar 31 2020 05:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38236 * 120.00564 * 2 1 4 4 C 1.38221 * 120.01063 * 179.97438 * 3 2 1 5 5 C 1.38258 * 120.02645 * 0.02562 * 4 3 2 6 6 C 1.50700 * 119.99358 * 179.97438 * 5 4 3 7 7 C 1.50702 * 109.46869 * 90.00024 * 6 5 4 8 8 O 1.21283 * 120.00262 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99928 * 179.72354 * 7 6 5 10 10 C 1.46499 * 120.00199 * 180.27479 * 9 7 6 11 11 C 1.52997 * 109.47555 * 180.02562 * 10 9 7 12 12 C 1.50694 * 109.47460 * 180.02562 * 11 10 9 13 13 H 1.08002 * 120.00179 * 359.97438 * 12 11 10 14 14 C 1.37879 * 120.00472 * 180.02562 * 12 11 10 15 15 N 1.31514 * 119.99350 * 359.97438 * 14 12 11 16 16 Si 1.86789 * 120.00458 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47135 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47491 * 119.99896 * 16 14 12 19 19 H 1.48511 * 109.47242 * 239.99873 * 16 14 12 20 20 C 1.38190 * 120.01626 * 0.23503 * 5 4 3 21 21 C 1.38323 * 120.00374 * 179.97438 * 2 1 3 22 22 Cl 1.73598 * 120.01730 * 0.04541 * 21 2 1 23 23 H 1.09000 * 109.47334 * 89.99776 * 1 2 3 24 24 H 1.09001 * 109.46941 * 210.00453 * 1 2 3 25 25 H 1.09002 * 109.46766 * 329.99768 * 1 2 3 26 26 H 1.07997 * 119.99210 * 359.95694 * 3 2 1 27 27 H 1.07997 * 119.98347 * 179.97438 * 4 3 2 28 28 H 1.09004 * 109.47210 * 330.00318 * 6 5 4 29 29 H 1.08994 * 109.47551 * 209.99970 * 6 5 4 30 30 H 0.97000 * 120.00317 * 0.28382 * 9 7 6 31 31 H 1.08998 * 109.47134 * 300.00670 * 10 9 7 32 32 H 1.09002 * 109.46857 * 59.99862 * 10 9 7 33 33 H 1.08998 * 109.47382 * 300.00439 * 11 10 9 34 34 H 1.09005 * 109.46800 * 60.00640 * 11 10 9 35 35 H 0.97005 * 119.99661 * 179.97438 * 15 14 12 36 36 H 1.07993 * 120.01193 * 179.74436 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2725 0.0002 0.0005 6 6 5.7795 0.0012 0.0005 7 6 6.2818 0.0016 1.4214 8 8 5.4936 0.0006 2.3432 9 7 7.6068 -0.0032 1.6677 10 6 8.0951 -0.0090 3.0489 11 6 9.6251 -0.0129 3.0490 12 6 10.1274 -0.0195 4.4698 13 1 9.4256 -0.0203 5.2907 14 6 11.4829 -0.0234 4.7219 15 7 12.3375 -0.0219 3.7223 16 14 12.1055 -0.0323 6.4829 17 1 10.9504 -0.0332 7.4163 18 1 12.9280 -1.2475 6.7112 19 1 12.9331 1.1776 6.7215 20 6 3.5826 -1.1971 -0.0049 21 6 2.1987 -1.1979 0.0005 22 17 1.3313 -2.7016 0.0000 23 1 -0.3634 0.0000 -1.0277 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3633 0.8900 0.5139 26 1 1.6583 2.1324 -0.0007 27 1 4.1202 2.1327 0.0001 28 1 6.1423 0.8915 -0.5133 29 1 6.1435 -0.8884 -0.5132 30 1 8.2372 -0.0027 0.9305 31 1 7.7344 0.8804 3.5655 32 1 7.7291 -0.8995 3.5599 33 1 9.9862 -0.9021 2.5323 34 1 9.9908 0.8779 2.5382 35 1 13.2912 -0.0243 3.8996 36 1 4.1231 -2.1320 -0.0091 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259581029.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:30 Heat of formation + Delta-G solvation = -64.255493 kcal Electronic energy + Delta-G solvation = -18460.033329 eV Core-core repulsion = 15354.048679 eV Total energy + Delta-G solvation = -3105.984650 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.092 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.09005 -39.97139 -37.46220 -36.58052 -34.81471 -34.73095 -31.92124 -31.69796 -30.38402 -27.16915 -25.87215 -23.80681 -23.02135 -22.19243 -21.24996 -18.60687 -17.96088 -17.48428 -17.12828 -16.51696 -16.35236 -16.28315 -16.16383 -15.10597 -14.97291 -14.69013 -14.56394 -14.33110 -13.82804 -13.48549 -13.28489 -13.20736 -12.98523 -12.75109 -12.58844 -12.50024 -12.31847 -12.23349 -12.12180 -11.71416 -11.64433 -11.44739 -10.85700 -10.61348 -9.98811 -9.78332 -9.46690 -8.25089 -6.35198 0.17887 0.29155 1.15517 1.40164 1.41485 1.54339 1.70489 2.25380 2.43321 2.76488 3.09794 3.59335 3.80310 3.94811 4.05762 4.18866 4.28175 4.44686 4.50081 4.53939 4.62440 4.69956 4.77905 4.79300 4.86288 4.94983 5.18416 5.26154 5.31656 5.44680 5.50880 5.52255 5.58985 5.79180 5.87988 6.16468 6.67792 6.78460 7.33893 7.34286 8.86873 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.034686 B = 0.002707 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.047859 B =10342.885382 C =10539.878449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.088 4.088 3 C -0.112 4.112 4 C -0.105 4.105 5 C -0.070 4.070 6 C -0.093 4.093 7 C 0.505 3.495 8 O -0.587 6.587 9 N -0.718 5.718 10 C 0.141 3.859 11 C 0.023 3.977 12 C -0.547 4.547 13 H 0.056 0.944 14 C 0.008 3.992 15 N -0.926 5.926 16 Si 0.964 3.036 17 H -0.267 1.267 18 H -0.276 1.276 19 H -0.276 1.276 20 C -0.109 4.109 21 C -0.053 4.053 22 Cl -0.073 7.073 23 H 0.087 0.913 24 H 0.067 0.933 25 H 0.085 0.915 26 H 0.157 0.843 27 H 0.143 0.857 28 H 0.137 0.863 29 H 0.129 0.871 30 H 0.413 0.587 31 H 0.044 0.956 32 H 0.041 0.959 33 H 0.009 0.991 34 H 0.011 0.989 35 H 0.266 0.734 36 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.657 0.951 -13.526 24.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.089 4.089 3 C -0.130 4.130 4 C -0.123 4.123 5 C -0.071 4.071 6 C -0.132 4.132 7 C 0.293 3.707 8 O -0.468 6.468 9 N -0.369 5.369 10 C 0.017 3.983 11 C -0.014 4.014 12 C -0.585 4.585 13 H 0.075 0.925 14 C -0.191 4.191 15 N -0.565 5.565 16 Si 0.788 3.212 17 H -0.191 1.191 18 H -0.202 1.202 19 H -0.201 1.201 20 C -0.127 4.127 21 C -0.079 4.079 22 Cl -0.044 7.044 23 H 0.105 0.895 24 H 0.086 0.914 25 H 0.103 0.897 26 H 0.174 0.826 27 H 0.161 0.839 28 H 0.155 0.845 29 H 0.147 0.853 30 H 0.249 0.751 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.028 0.972 34 H 0.029 0.971 35 H 0.075 0.925 36 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -21.105 0.806 -12.905 24.751 hybrid contribution 1.005 -0.366 0.718 1.289 sum -20.099 0.440 -12.187 23.509 Atomic orbital electron populations 1.20903 0.88795 1.03919 1.03669 1.20104 0.98002 0.91282 0.99496 1.21283 0.93967 0.97931 0.99788 1.21407 0.94862 0.98144 0.97931 1.19405 0.94740 0.93018 0.99913 1.20736 0.91773 1.08276 0.92431 1.21246 0.81810 0.75211 0.92399 1.90690 1.56294 1.51554 1.48227 1.46148 1.07213 1.74165 1.09415 1.21170 0.95530 0.99504 0.82079 1.19131 0.89317 0.96440 0.96561 1.21507 0.92325 1.51428 0.93290 0.92546 1.25852 0.97125 0.94437 1.01710 1.70057 1.02572 1.51077 1.32841 0.85417 0.78348 0.77950 0.79461 1.19101 1.20204 1.20127 1.21023 0.92361 0.99034 1.00305 1.20913 0.92401 0.87166 1.07448 1.98340 1.76763 1.32263 1.97001 0.89493 0.91435 0.89653 0.82583 0.83887 0.84534 0.85316 0.75115 0.93795 0.94013 0.97250 0.97112 0.92515 0.85028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.68 9.62 71.24 0.69 -1.00 16 2 C -0.09 -1.76 5.88 -19.84 -0.12 -1.88 16 3 C -0.11 -2.06 9.70 22.27 0.22 -1.84 16 4 C -0.11 -2.15 9.70 22.27 0.22 -1.94 16 5 C -0.07 -1.59 4.37 -19.87 -0.09 -1.68 16 6 C -0.09 -1.85 5.83 29.10 0.17 -1.68 16 7 C 0.51 15.78 7.82 87.66 0.69 16.47 16 8 O -0.59 -23.89 16.03 -3.04 -0.05 -23.94 16 9 N -0.72 -23.49 5.56 -463.06 -2.57 -26.07 16 10 C 0.14 6.01 5.61 86.38 0.48 6.49 16 11 C 0.02 1.14 5.09 29.85 0.15 1.30 16 12 C -0.55 -30.55 9.11 25.60 0.23 -30.32 16 13 H 0.06 3.11 7.74 -2.91 -0.02 3.09 16 14 C 0.01 0.42 5.46 84.66 0.46 0.88 16 15 N -0.93 -53.92 13.29 21.45 0.28 -53.64 16 16 Si 0.96 43.57 29.54 68.60 2.03 45.59 16 17 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 18 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 19 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 20 C -0.11 -2.59 9.49 22.29 0.21 -2.38 16 21 C -0.05 -1.22 6.31 22.32 0.14 -1.07 16 22 Cl -0.07 -1.54 27.30 -2.72 -0.07 -1.62 16 23 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 24 H 0.07 1.05 6.90 -2.39 -0.02 1.03 16 25 H 0.08 0.97 8.09 -2.39 -0.02 0.95 16 26 H 0.16 1.95 8.06 -2.91 -0.02 1.93 16 27 H 0.14 2.36 8.06 -2.91 -0.02 2.34 16 28 H 0.14 1.86 8.09 -2.38 -0.02 1.84 16 29 H 0.13 1.93 8.08 -2.39 -0.02 1.91 16 30 H 0.41 11.06 8.47 -92.71 -0.79 10.28 16 31 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.01 0.55 8.14 -2.38 -0.02 0.53 16 35 H 0.27 14.51 8.31 -92.70 -0.77 13.73 16 36 H 0.13 2.96 8.06 -2.91 -0.02 2.94 16 Total: -1.00 -69.72 327.59 3.37 -66.35 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: 0.30 Total: 11.96 kcal Atomic # 6 Polarization: -22.10 SS G_CDS: 3.45 Total: -18.64 kcal Atomic # 7 Polarization: -77.42 SS G_CDS: -2.29 Total: -79.70 kcal Atomic # 8 Polarization: -23.89 SS G_CDS: -0.05 Total: -23.94 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.59 kcal Atomic # 17 Polarization: -1.54 SS G_CDS: -0.07 Total: -1.62 kcal Total: -69.72 3.37 -66.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259581029.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.096 kcal (2) G-P(sol) polarization free energy of solvation -69.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds