Wall clock time and date at job start Tue Mar 31 2020 05:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46936 * 2 1 4 4 C 1.52991 * 109.47259 * 120.00140 * 2 1 3 5 5 N 1.46506 * 109.47444 * 64.99977 * 4 2 1 6 6 C 1.34769 * 119.99914 * 270.00360 * 5 4 2 7 7 O 1.21751 * 119.99934 * 184.51787 * 6 5 4 8 8 C 1.46149 * 120.00164 * 4.51375 * 6 5 4 9 9 H 1.07992 * 120.00267 * 351.03477 * 8 6 5 10 10 C 1.40124 * 120.00136 * 171.03312 * 8 6 5 11 11 N 1.30642 * 119.99890 * 353.21538 * 10 8 6 12 12 Si 1.86802 * 120.00386 * 173.21066 * 10 8 6 13 13 H 1.48492 * 109.47452 * 94.97946 * 12 10 8 14 14 H 1.48505 * 109.47227 * 214.98426 * 12 10 8 15 15 H 1.48507 * 109.46509 * 334.98185 * 12 10 8 16 16 C 1.39547 * 119.99942 * 89.99501 * 5 4 2 17 17 C 1.39030 * 120.07144 * 247.04320 * 16 5 4 18 18 C 1.38054 * 119.92916 * 179.79250 * 17 16 5 19 19 C 1.38446 * 120.06455 * 0.48521 * 18 17 16 20 20 Cl 1.73607 * 119.92641 * 179.72037 * 19 18 17 21 21 C 1.38452 * 120.14506 * 359.74574 * 19 18 17 22 22 C 1.38039 * 120.07130 * 0.02562 * 21 19 18 23 23 H 1.08998 * 109.47361 * 299.99956 * 1 2 3 24 24 H 1.08998 * 109.47355 * 60.00171 * 1 2 3 25 25 H 1.08998 * 109.47052 * 179.97438 * 1 2 3 26 26 H 1.09009 * 109.46891 * 240.00243 * 2 1 3 27 27 H 1.09000 * 109.47067 * 180.02562 * 3 2 1 28 28 H 1.09008 * 109.47016 * 299.99969 * 3 2 1 29 29 H 1.08992 * 109.47214 * 60.00240 * 3 2 1 30 30 H 1.08996 * 109.47348 * 304.99813 * 4 2 1 31 31 H 1.09000 * 109.47429 * 184.99786 * 4 2 1 32 32 H 0.97001 * 119.99885 * 180.02562 * 11 10 8 33 33 H 1.08002 * 120.03808 * 0.02562 * 17 16 5 34 34 H 1.07999 * 119.96741 * 180.22923 * 18 17 16 35 35 H 1.08003 * 119.96055 * 179.97438 * 21 19 18 36 36 H 1.08001 * 120.03905 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2491 5 7 1.6525 -2.1329 1.1905 6 6 0.4769 -2.5313 1.7155 7 8 0.1914 -3.7146 1.7408 8 6 -0.4551 -1.5430 2.2546 9 1 -0.1464 -0.5141 2.3659 10 6 -1.7492 -1.9304 2.6269 11 7 -2.1677 -3.1411 2.3707 12 14 -2.8760 -0.7157 3.4897 13 1 -3.7458 -0.0493 2.4874 14 1 -3.7199 -1.4375 4.4756 15 1 -2.0578 0.3055 4.1920 16 6 2.5005 -3.0649 0.5909 17 6 2.1205 -3.6949 -0.5888 18 6 2.9636 -4.6133 -1.1817 19 6 4.1820 -4.9145 -0.5974 20 17 5.2363 -6.0754 -1.3423 21 6 4.5613 -4.2925 0.5799 22 6 3.7248 -3.3698 1.1752 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8901 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8901 29 1 1.6767 1.9563 0.8899 30 1 1.6055 -0.2618 2.1369 31 1 3.1263 -0.6444 1.2951 32 1 -3.0637 -3.4092 2.6281 33 1 1.1683 -3.4632 -1.0428 34 1 2.6705 -5.1002 -2.1001 35 1 5.5123 -4.5301 1.0333 36 1 4.0211 -2.8852 2.0938 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274988108.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:05 Heat of formation + Delta-G solvation = -40.285093 kcal Electronic energy + Delta-G solvation = -20147.601546 eV Core-core repulsion = 17042.656330 eV Total energy + Delta-G solvation = -3104.945216 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.092 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.10142 -39.15353 -37.37288 -37.08681 -34.95476 -34.12950 -32.05518 -30.69643 -28.73193 -27.37866 -26.70543 -23.95150 -23.66519 -21.37664 -20.96215 -18.61096 -18.09958 -17.65082 -17.07872 -16.66288 -16.10646 -15.49708 -15.22791 -15.13185 -14.51951 -14.46916 -14.30887 -13.86097 -13.71292 -13.29920 -13.19462 -12.84271 -12.82412 -12.67707 -12.57189 -12.39931 -12.18405 -12.04040 -11.93410 -11.75144 -11.60084 -11.28260 -10.87253 -10.02433 -9.91845 -9.76934 -8.95089 -8.30652 -6.72539 0.17043 0.34090 1.14933 1.39592 1.41672 1.55873 2.22282 2.44171 2.66903 2.71597 3.61677 3.86707 3.93139 4.04796 4.20472 4.34579 4.35991 4.48844 4.52346 4.72525 4.78451 4.95062 4.96235 5.03763 5.06282 5.17535 5.22806 5.23787 5.34743 5.38722 5.47556 5.63605 5.67501 5.79429 5.82029 6.20812 6.57518 6.91110 7.34212 8.47264 8.67617 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.021087 B = 0.005314 C = 0.004582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.513037 B = 5267.582476 C = 6109.553504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.104 4.104 3 C -0.134 4.134 4 C 0.129 3.871 5 N -0.602 5.602 6 C 0.549 3.451 7 O -0.625 6.625 8 C -0.541 4.541 9 H 0.101 0.899 10 C 0.035 3.965 11 N -0.823 5.823 12 Si 0.979 3.021 13 H -0.262 1.262 14 H -0.280 1.280 15 H -0.244 1.244 16 C 0.164 3.836 17 C -0.124 4.124 18 C -0.099 4.099 19 C -0.055 4.055 20 Cl -0.065 7.065 21 C -0.092 4.092 22 C -0.130 4.130 23 H 0.057 0.943 24 H 0.045 0.955 25 H 0.032 0.968 26 H 0.052 0.948 27 H 0.066 0.934 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.272 0.728 33 H 0.103 0.897 34 H 0.145 0.855 35 H 0.161 0.839 36 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.575 6.063 -4.774 13.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.124 4.124 3 C -0.191 4.191 4 C 0.007 3.993 5 N -0.333 5.333 6 C 0.357 3.643 7 O -0.511 6.511 8 C -0.578 4.578 9 H 0.118 0.882 10 C -0.180 4.180 11 N -0.453 5.453 12 Si 0.799 3.201 13 H -0.187 1.187 14 H -0.205 1.205 15 H -0.167 1.167 16 C 0.072 3.928 17 C -0.144 4.144 18 C -0.118 4.118 19 C -0.082 4.082 20 Cl -0.037 7.037 21 C -0.111 4.111 22 C -0.150 4.150 23 H 0.076 0.924 24 H 0.064 0.936 25 H 0.051 0.949 26 H 0.071 0.929 27 H 0.085 0.915 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.097 0.903 31 H 0.100 0.900 32 H 0.082 0.918 33 H 0.121 0.879 34 H 0.163 0.837 35 H 0.178 0.822 36 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 11.359 5.228 -4.792 13.391 hybrid contribution -0.961 -0.138 0.177 0.987 sum 10.398 5.090 -4.615 12.463 Atomic orbital electron populations 1.21923 0.95508 1.01024 1.00507 1.21452 0.96060 0.97271 0.97639 1.21707 1.01244 0.93756 1.02436 1.21638 0.99455 0.79384 0.98786 1.45723 1.19683 1.07336 1.60566 1.18655 0.79646 0.88638 0.77392 1.90605 1.76599 1.20843 1.63088 1.21391 0.96587 0.96284 1.43490 0.88161 1.26816 1.00081 0.96890 0.94225 1.70133 1.17615 1.20368 1.37183 0.85264 0.77929 0.78433 0.78453 1.18652 1.20496 1.16726 1.18110 0.91103 0.92222 0.91372 1.21265 0.99199 0.98566 0.95403 1.20995 0.92479 0.97458 1.00865 1.20892 0.93277 0.97034 0.96960 1.98336 1.65324 1.57978 1.82014 1.21104 1.00814 0.95423 0.93736 1.21434 0.94335 0.99084 1.00148 0.92399 0.93613 0.94921 0.92909 0.91525 0.91974 0.92006 0.90343 0.90035 0.91780 0.87915 0.83686 0.82183 0.84042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.80 7.55 71.98 0.54 -4.26 16 2 C -0.10 -3.23 3.13 -10.80 -0.03 -3.26 16 3 C -0.13 -3.01 9.19 71.98 0.66 -2.35 16 4 C 0.13 4.41 4.88 86.38 0.42 4.83 16 5 N -0.60 -26.38 2.40 -636.26 -1.53 -27.91 16 6 C 0.55 30.27 6.35 86.30 0.55 30.82 16 7 O -0.63 -40.91 14.86 -4.51 -0.07 -40.98 16 8 C -0.54 -28.30 6.12 24.78 0.15 -28.15 16 9 H 0.10 4.65 4.34 -2.91 -0.01 4.64 16 10 C 0.04 1.86 5.48 85.33 0.47 2.33 16 11 N -0.82 -48.99 11.93 21.85 0.26 -48.73 16 12 Si 0.98 39.32 29.57 68.60 2.03 41.35 16 13 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 14 H -0.28 -11.20 7.11 99.48 0.71 -10.49 16 15 H -0.24 -8.99 7.11 99.48 0.71 -8.28 16 16 C 0.16 6.67 4.77 38.30 0.18 6.85 16 17 C -0.12 -4.95 9.50 22.42 0.21 -4.74 16 18 C -0.10 -3.25 9.82 22.28 0.22 -3.03 16 19 C -0.05 -1.62 6.32 22.37 0.14 -1.48 16 20 Cl -0.07 -1.61 28.95 -2.72 -0.08 -1.69 16 21 C -0.09 -2.61 9.82 22.27 0.22 -2.39 16 22 C -0.13 -4.34 9.66 22.42 0.22 -4.12 16 23 H 0.06 2.09 6.46 -2.39 -0.02 2.07 16 24 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 25 H 0.03 1.48 5.73 -2.39 -0.01 1.47 16 26 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 27 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 29 H 0.06 1.32 8.14 -2.39 -0.02 1.31 16 30 H 0.08 2.74 6.19 -2.39 -0.01 2.73 16 31 H 0.08 2.30 7.84 -2.39 -0.02 2.28 16 32 H 0.27 14.87 8.29 -92.71 -0.77 14.10 16 33 H 0.10 4.52 8.06 -2.91 -0.02 4.50 16 34 H 0.15 4.10 8.06 -2.91 -0.02 4.07 16 35 H 0.16 3.47 8.06 -2.91 -0.02 3.44 16 36 H 0.14 4.22 8.06 -2.91 -0.02 4.20 16 Total: -1.00 -70.20 313.41 5.65 -64.55 By element: Atomic # 1 Polarization: 21.26 SS G_CDS: 1.09 Total: 22.35 kcal Atomic # 6 Polarization: -12.89 SS G_CDS: 3.95 Total: -8.94 kcal Atomic # 7 Polarization: -75.37 SS G_CDS: -1.27 Total: -76.64 kcal Atomic # 8 Polarization: -40.91 SS G_CDS: -0.07 Total: -40.98 kcal Atomic # 14 Polarization: 39.32 SS G_CDS: 2.03 Total: 41.35 kcal Atomic # 17 Polarization: -1.61 SS G_CDS: -0.08 Total: -1.69 kcal Total: -70.20 5.65 -64.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274988108.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.264 kcal (2) G-P(sol) polarization free energy of solvation -70.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds