Wall clock time and date at job start Tue Mar 31 2020 05:34:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53000 * 109.47174 * 2 1 4 4 C 1.50704 * 109.47539 * 239.99925 * 2 1 3 5 5 N 1.31796 * 119.03634 * 59.72596 * 4 2 1 6 6 C 1.32266 * 120.89161 * 179.76044 * 5 4 2 7 7 C 1.39240 * 119.01350 * 0.50788 * 6 5 4 8 8 N 1.39973 * 120.86742 * 179.72464 * 7 6 5 9 9 C 1.34778 * 120.00092 * 32.42651 * 8 7 6 10 10 O 1.21287 * 120.00083 * 5.25543 * 9 8 7 11 11 C 1.50700 * 120.00176 * 185.25846 * 9 8 7 12 12 S 1.81000 * 109.47303 * 179.97438 * 11 9 8 13 13 C 1.76195 * 100.00109 * 179.97438 * 12 11 9 14 14 H 1.08004 * 119.99810 * 0.02562 * 13 12 11 15 15 C 1.38798 * 120.00345 * 179.97438 * 13 12 11 16 16 N 1.31628 * 120.00115 * 179.97438 * 15 13 12 17 17 Si 1.86797 * 119.99650 * 0.02562 * 15 13 12 18 18 H 1.48499 * 109.47441 * 89.99996 * 17 15 13 19 19 H 1.48503 * 109.47289 * 209.99941 * 17 15 13 20 20 H 1.48502 * 109.47294 * 329.99560 * 17 15 13 21 21 C 1.39236 * 118.25823 * 359.74936 * 7 6 5 22 22 N 1.31793 * 119.03594 * 240.00110 * 4 2 1 23 23 H 1.09006 * 109.46977 * 60.00344 * 1 2 3 24 24 H 1.09003 * 109.46834 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47769 * 300.00188 * 1 2 3 26 26 H 1.09006 * 109.46977 * 119.99656 * 2 1 3 27 27 H 1.09006 * 109.46888 * 299.99711 * 3 2 1 28 28 H 1.09000 * 109.47537 * 59.99700 * 3 2 1 29 29 H 1.09003 * 109.47435 * 179.97438 * 3 2 1 30 30 H 1.07994 * 120.49614 * 180.23348 * 6 5 4 31 31 H 0.96995 * 120.00170 * 212.41398 * 8 7 6 32 32 H 1.09005 * 109.47209 * 299.99698 * 11 9 8 33 33 H 1.09000 * 109.46900 * 59.99477 * 11 9 8 34 34 H 0.97004 * 119.99906 * 179.97438 * 16 15 13 35 35 H 1.07999 * 120.48901 * 179.97438 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2305 5 7 1.6980 -0.2470 -2.4181 6 6 2.1222 -0.8390 -3.5221 7 6 2.9238 -1.9725 -3.4154 8 7 3.3895 -2.6329 -4.5583 9 6 3.6601 -1.9330 -5.6778 10 8 3.5917 -0.7221 -5.6674 11 6 4.0474 -2.6549 -6.9427 12 16 4.3440 -1.4487 -8.2592 13 6 4.7673 -2.5352 -9.5801 14 1 4.7807 -3.6029 -9.4178 15 6 5.0827 -2.0192 -10.8293 16 7 5.3994 -2.8309 -11.8159 17 14 5.0589 -0.1726 -11.1101 18 1 6.4007 0.3905 -10.8138 19 1 4.7056 0.1086 -12.5248 20 1 4.0515 0.4513 -10.2150 21 6 3.2493 -2.4321 -2.1420 22 7 2.7888 -1.7801 -1.0874 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.8932 -0.5138 0.8901 27 1 1.6766 1.9563 -0.8901 28 1 1.6766 1.9564 0.8899 29 1 3.1300 1.4425 0.0005 30 1 1.8474 -0.4516 -4.4920 31 1 3.5178 -3.5943 -4.5445 32 1 4.9548 -3.2329 -6.7679 33 1 3.2410 -3.3255 -7.2397 34 1 5.6194 -2.4702 -12.6891 35 1 3.8684 -3.3083 -2.0174 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280061521.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:00 Heat of formation + Delta-G solvation = 2.393747 kcal Electronic energy + Delta-G solvation = -18656.435735 eV Core-core repulsion = 15587.677670 eV Total energy + Delta-G solvation = -3068.758065 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.52108 -39.62271 -36.15404 -34.64865 -33.84008 -32.52823 -30.88868 -28.69376 -27.37004 -25.72433 -24.97810 -24.42467 -21.21484 -20.87082 -18.60730 -17.61615 -17.53200 -16.79570 -16.46556 -15.43288 -15.07722 -14.96299 -14.58211 -14.23617 -14.16951 -13.80696 -13.63421 -13.19166 -12.87987 -12.53611 -12.34218 -12.23505 -11.51382 -11.39099 -11.28691 -11.14700 -11.08698 -10.99831 -10.96253 -10.74109 -10.00812 -9.87519 -9.34688 -9.09008 -8.64512 -8.54576 -7.04744 -6.37364 -4.11246 0.66787 0.93188 2.46496 2.57258 3.03768 3.26878 3.43120 3.47153 3.60149 3.73343 4.02052 4.24232 4.30491 4.49833 4.71733 4.78525 4.82807 4.91825 5.01690 5.07290 5.31639 5.43432 5.53660 5.55234 5.63894 5.64571 5.72305 5.80826 5.91528 6.01269 6.12145 6.38154 6.83932 7.08828 7.85331 7.95232 8.02805 8.32759 9.08194 10.71692 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.040350 B = 0.003203 C = 0.003043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.753568 B = 8740.546559 C = 9200.608474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.022 4.022 3 C -0.142 4.142 4 C 0.294 3.706 5 N -0.490 5.490 6 C 0.149 3.851 7 C 0.052 3.948 8 N -0.668 5.668 9 C 0.532 3.468 10 O -0.496 6.496 11 C -0.125 4.125 12 S -0.136 6.136 13 C -0.524 4.524 14 H 0.090 0.910 15 C 0.097 3.903 16 N -0.878 5.878 17 Si 0.856 3.144 18 H -0.267 1.267 19 H -0.273 1.273 20 H -0.235 1.235 21 C 0.120 3.880 22 N -0.499 5.499 23 H 0.067 0.933 24 H 0.052 0.948 25 H 0.064 0.936 26 H 0.093 0.907 27 H 0.068 0.932 28 H 0.064 0.936 29 H 0.053 0.947 30 H 0.180 0.820 31 H 0.416 0.584 32 H 0.103 0.897 33 H 0.105 0.895 34 H 0.272 0.728 35 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.224 0.862 21.893 23.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.043 4.043 3 C -0.200 4.200 4 C 0.026 3.974 5 N -0.203 5.203 6 C -0.020 4.020 7 C -0.049 4.049 8 N -0.316 5.316 9 C 0.319 3.681 10 O -0.368 6.368 11 C -0.275 4.275 12 S 0.090 5.910 13 C -0.672 4.672 14 H 0.108 0.892 15 C -0.112 4.112 16 N -0.514 5.514 17 Si 0.681 3.319 18 H -0.191 1.191 19 H -0.198 1.198 20 H -0.159 1.159 21 C -0.049 4.049 22 N -0.212 5.212 23 H 0.086 0.914 24 H 0.071 0.929 25 H 0.083 0.917 26 H 0.112 0.888 27 H 0.087 0.913 28 H 0.083 0.917 29 H 0.072 0.928 30 H 0.197 0.803 31 H 0.252 0.748 32 H 0.121 0.879 33 H 0.123 0.877 34 H 0.082 0.918 35 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -7.602 3.296 22.432 23.913 hybrid contribution 0.757 -1.858 -1.337 2.411 sum -6.845 1.438 21.095 22.224 Atomic orbital electron populations 1.21795 0.93216 1.02039 1.02834 1.19896 0.96432 0.95746 0.92199 1.21806 1.01040 0.94321 1.02830 1.23093 0.91591 0.89446 0.93244 1.68214 1.22691 1.31107 0.98328 1.23489 0.89355 0.90774 0.98352 1.19621 0.98256 0.98177 0.88813 1.43514 1.66361 1.11645 1.10078 1.20655 0.75488 0.87989 0.83939 1.90733 1.48710 1.13676 1.83699 1.23285 1.05483 1.03699 0.95035 1.84856 1.90568 1.11339 1.04250 1.22275 1.54120 0.95206 0.95571 0.89225 1.24708 0.93152 0.98666 0.94712 1.69930 1.43921 1.35242 1.02282 0.86746 0.80780 0.85155 0.79232 1.19149 1.19805 1.15922 1.23058 0.96187 0.99518 0.86138 1.68184 1.11144 1.08356 1.33536 0.91359 0.92872 0.91731 0.88838 0.91336 0.91719 0.92794 0.80300 0.74759 0.87869 0.87688 0.91810 0.81293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 9.08 37.15 0.34 -0.83 16 2 C -0.02 -0.21 3.25 -91.77 -0.30 -0.51 16 3 C -0.14 -1.26 9.09 37.16 0.34 -0.92 16 4 C 0.29 3.66 6.34 -157.19 -1.00 2.66 16 5 N -0.49 -6.75 9.79 -10.58 -0.10 -6.85 16 6 C 0.15 2.11 9.94 -16.99 -0.17 1.94 16 7 C 0.05 0.63 6.34 -83.40 -0.53 0.11 16 8 N -0.67 -7.59 5.37 -9.68 -0.05 -7.64 16 9 C 0.53 8.36 7.62 -10.98 -0.08 8.28 16 10 O -0.50 -9.61 13.56 5.55 0.08 -9.53 16 11 C -0.12 -2.14 6.16 36.01 0.22 -1.92 16 12 S -0.14 -3.25 18.55 -107.50 -1.99 -5.24 16 13 C -0.52 -14.46 10.04 30.94 0.31 -14.15 16 14 H 0.09 2.57 8.03 -52.48 -0.42 2.15 16 15 C 0.10 2.74 5.50 -17.43 -0.10 2.65 16 16 N -0.88 -25.81 13.97 55.49 0.78 -25.03 16 17 Si 0.86 21.13 27.74 -169.99 -4.71 16.42 16 18 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 19 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 20 H -0.24 -5.77 6.74 56.52 0.38 -5.39 16 21 C 0.12 1.30 11.26 -16.99 -0.19 1.10 16 22 N -0.50 -6.12 10.29 -10.58 -0.11 -6.23 16 23 H 0.07 0.63 8.00 -51.93 -0.42 0.22 16 24 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.09 0.81 8.09 -51.93 -0.42 0.39 16 27 H 0.07 0.68 8.01 -51.93 -0.42 0.27 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.18 2.70 6.47 -52.49 -0.34 2.36 16 31 H 0.42 3.15 8.82 -40.82 -0.36 2.79 16 32 H 0.10 1.61 8.14 -51.91 -0.42 1.19 16 33 H 0.10 1.64 8.14 -51.92 -0.42 1.22 16 34 H 0.27 7.43 8.31 -40.82 -0.34 7.10 16 35 H 0.17 1.23 8.06 -52.49 -0.42 0.80 16 LS Contribution 317.49 15.07 4.78 4.78 Total: -1.00 -32.95 317.49 -6.98 -39.93 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: -4.49 Total: 0.98 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: -1.16 Total: -1.60 kcal Atomic # 7 Polarization: -46.26 SS G_CDS: 0.51 Total: -45.74 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: 0.08 Total: -9.53 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.71 Total: 16.42 kcal Atomic # 16 Polarization: -3.25 SS G_CDS: -1.99 Total: -5.24 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -32.95 -6.98 -39.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280061521.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.328 kcal (2) G-P(sol) polarization free energy of solvation -32.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.934 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds