Wall clock time and date at job start Tue Mar 31 2020 05:26:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50698 * 120.00010 * 2 1 4 4 N 1.46503 * 109.47121 * 124.99956 * 3 2 1 5 5 C 1.46503 * 120.00034 * 270.00268 * 4 3 2 6 6 C 1.50703 * 109.46772 * 269.99825 * 5 4 3 7 7 H 1.08003 * 120.00015 * 359.97438 * 6 5 4 8 8 C 1.37875 * 119.99737 * 179.97438 * 6 5 4 9 9 N 1.31516 * 120.00075 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 119.99972 * 179.97438 * 8 6 5 11 11 H 1.48507 * 109.46903 * 89.99806 * 10 8 6 12 12 H 1.48492 * 109.47263 * 209.99953 * 10 8 6 13 13 H 1.48504 * 109.47194 * 330.00283 * 10 8 6 14 14 C 1.34778 * 119.99936 * 89.99911 * 4 3 2 15 15 O 1.21583 * 120.00024 * 179.97438 * 14 4 3 16 16 N 1.34775 * 119.99979 * 0.02562 * 14 4 3 17 17 C 1.39010 * 120.00009 * 180.02562 * 16 14 4 18 18 N 1.29618 * 124.94638 * 180.02562 * 17 16 14 19 19 C 1.32020 * 116.90846 * 179.97438 * 18 17 16 20 20 C 1.50706 * 122.71391 * 179.97438 * 19 18 17 21 21 C 1.33410 * 114.56974 * 0.24704 * 19 18 17 22 22 S 1.70969 * 124.94237 * 359.96900 * 17 16 14 23 23 H 1.07996 * 120.00155 * 359.97438 * 1 2 3 24 24 H 1.08002 * 119.99868 * 179.97438 * 1 2 3 25 25 H 1.08002 * 119.99778 * 179.97438 * 2 1 3 26 26 H 1.08993 * 109.47378 * 5.00039 * 3 2 1 27 27 H 1.09001 * 109.47214 * 244.99686 * 3 2 1 28 28 H 1.09000 * 109.47193 * 29.99811 * 5 4 3 29 29 H 1.08998 * 109.47297 * 150.00280 * 5 4 3 30 30 H 0.97001 * 119.99562 * 179.97438 * 9 8 6 31 31 H 0.97001 * 119.99875 * 359.97438 * 16 14 4 32 32 H 1.09001 * 109.46953 * 90.02441 * 20 19 18 33 33 H 1.09000 * 109.47318 * 210.02039 * 20 19 18 34 34 H 1.09000 * 109.47161 * 330.02669 * 20 19 18 35 35 H 1.08000 * 125.96236 * 179.72505 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1315 5 6 2.5589 1.8649 2.4249 6 6 2.8443 3.3436 2.4804 7 1 3.3041 3.8369 1.6368 8 6 2.5184 4.0667 3.6082 9 7 1.9590 3.4659 4.6357 10 14 2.8728 5.8994 3.6774 11 1 1.7006 6.6501 3.1599 12 1 3.1361 6.3000 5.0828 13 1 4.0635 6.2052 2.8442 14 6 4.2497 0.8661 0.9824 15 8 5.0219 0.8888 1.9213 16 7 4.6500 0.3762 -0.2076 17 6 5.9452 -0.1047 -0.3612 18 7 6.4299 -0.5948 -1.4589 19 6 7.6840 -1.0060 -1.4270 20 6 8.3780 -1.5975 -2.6269 21 6 8.2855 -0.8608 -0.2450 22 16 7.1311 -0.1344 0.8699 23 1 -0.5400 0.9353 0.0004 24 1 -0.5400 -0.9353 -0.0004 25 1 1.8500 -0.9353 0.0004 26 1 1.3587 2.1316 0.0896 27 1 2.6214 1.4026 -0.9314 28 1 1.4888 1.6966 2.5460 29 1 3.0990 1.3603 3.2260 30 1 1.7301 3.9746 5.4293 31 1 4.0340 0.3585 -0.9568 32 1 8.8601 -0.8028 -3.1961 33 1 9.1294 -2.3142 -2.2954 34 1 7.6464 -2.1033 -3.2570 35 1 9.3031 -1.1385 -0.0129 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291825802.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:03 Heat of formation + Delta-G solvation = 48.369019 kcal Electronic energy + Delta-G solvation = -19439.376855 eV Core-core repulsion = 16372.612427 eV Total energy + Delta-G solvation = -3066.764428 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.34373 -39.24836 -36.11952 -34.78798 -33.25598 -32.26052 -30.96058 -27.77459 -27.33519 -25.79973 -24.24568 -22.56104 -20.81777 -20.12788 -19.16941 -17.77638 -17.30529 -16.62062 -16.40164 -15.48538 -15.24590 -14.79569 -14.40431 -14.37557 -13.78120 -13.48626 -13.11369 -12.76547 -12.66886 -12.46432 -12.27286 -11.94510 -11.40734 -11.23746 -11.08886 -10.94343 -10.68275 -10.50507 -10.23437 -9.77874 -9.54710 -9.45517 -9.31348 -8.89644 -8.50288 -8.18055 -7.72211 -6.11607 -4.16963 1.08130 1.47165 2.18142 2.33563 2.78356 2.89293 3.26536 3.33882 3.38313 3.61699 4.18001 4.41069 4.67263 5.06808 5.23079 5.26393 5.29500 5.38829 5.46076 5.58263 5.74764 5.82716 5.89610 6.03673 6.17016 6.40108 6.56278 6.69028 6.81335 7.15386 7.27985 7.41500 7.84002 7.96148 8.11919 8.26526 8.74548 8.90772 9.48432 10.96390 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.017609 B = 0.005089 C = 0.004243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.752501 B = 5500.651619 C = 6597.325517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.176 4.176 3 C 0.133 3.867 4 N -0.590 5.590 5 C 0.260 3.740 6 C -0.532 4.532 7 H 0.058 0.942 8 C 0.064 3.936 9 N -0.892 5.892 10 Si 0.899 3.101 11 H -0.280 1.280 12 H -0.284 1.284 13 H -0.274 1.274 14 C 0.696 3.304 15 O -0.549 6.549 16 N -0.643 5.643 17 C 0.278 3.722 18 N -0.533 5.533 19 C 0.088 3.912 20 C -0.074 4.074 21 C -0.344 4.344 22 S 0.253 5.747 23 H 0.101 0.899 24 H 0.096 0.904 25 H 0.105 0.895 26 H 0.097 0.903 27 H 0.070 0.930 28 H 0.039 0.961 29 H 0.048 0.952 30 H 0.264 0.736 31 H 0.414 0.586 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.100 -8.870 -12.029 15.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.195 4.195 3 C 0.009 3.991 4 N -0.323 5.323 5 C 0.142 3.858 6 C -0.570 4.570 7 H 0.077 0.923 8 C -0.139 4.139 9 N -0.531 5.531 10 Si 0.726 3.274 11 H -0.206 1.206 12 H -0.210 1.210 13 H -0.199 1.199 14 C 0.396 3.604 15 O -0.425 6.425 16 N -0.297 5.297 17 C -0.091 4.091 18 N -0.258 5.258 19 C -0.045 4.045 20 C -0.134 4.134 21 C -0.485 4.485 22 S 0.503 5.497 23 H 0.119 0.881 24 H 0.114 0.886 25 H 0.123 0.877 26 H 0.116 0.884 27 H 0.088 0.912 28 H 0.057 0.943 29 H 0.066 0.934 30 H 0.074 0.926 31 H 0.253 0.747 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 5.097 -8.427 -10.448 14.358 hybrid contribution 0.082 0.650 -1.122 1.299 sum 5.179 -7.777 -11.570 14.872 Atomic orbital electron populations 1.23847 0.95725 1.01978 0.99535 1.23398 0.96604 0.98730 1.00795 1.20639 0.93261 0.96178 0.89007 1.47585 1.08020 1.61933 1.14745 1.19365 0.95603 0.93797 0.77042 1.21416 1.41005 0.93140 1.01488 0.92341 1.24906 0.94900 0.98835 0.95212 1.69927 1.41742 1.36256 1.05180 0.86486 0.78649 0.84805 0.77433 1.20609 1.21013 1.19862 1.15899 0.84077 0.79088 0.81326 1.90838 1.51999 1.61519 1.38123 1.42283 1.09733 1.63052 1.14671 1.23185 0.91835 0.99242 0.94827 1.66148 1.13821 1.20010 1.25829 1.19697 0.88506 1.00302 0.95958 1.20299 0.99166 1.00065 0.93850 1.27223 1.06837 1.15235 0.99161 1.85246 0.99044 1.55384 1.10025 0.88085 0.88567 0.87685 0.88440 0.91241 0.94272 0.93402 0.92589 0.74676 0.91059 0.91028 0.91049 0.81409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.10 14.32 29.01 0.42 -1.69 16 2 C -0.18 -2.38 9.85 -36.03 -0.35 -2.73 16 3 C 0.13 2.04 5.61 -5.19 -0.03 2.01 16 4 N -0.59 -11.91 2.44 -182.18 -0.44 -12.35 16 5 C 0.26 6.48 5.16 -5.19 -0.03 6.45 16 6 C -0.53 -14.48 9.39 -34.44 -0.32 -14.80 16 7 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16 8 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 9 N -0.89 -25.70 13.29 55.43 0.74 -24.96 16 10 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 12 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 13 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 14 C 0.70 14.27 8.24 -86.92 -0.72 13.55 16 15 O -0.55 -13.04 13.38 5.29 0.07 -12.97 16 16 N -0.64 -10.95 5.27 -17.47 -0.09 -11.04 16 17 C 0.28 4.81 8.19 -87.34 -0.72 4.09 16 18 N -0.53 -8.71 10.58 -11.27 -0.12 -8.83 16 19 C 0.09 1.25 6.74 -84.20 -0.57 0.68 16 20 C -0.07 -0.75 10.31 36.01 0.37 -0.38 16 21 C -0.34 -4.69 11.10 29.04 0.32 -4.37 16 22 S 0.25 4.22 20.21 -107.50 -2.17 2.05 16 23 H 0.10 1.19 7.84 -52.49 -0.41 0.78 16 24 H 0.10 1.01 8.06 -52.49 -0.42 0.59 16 25 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 26 H 0.10 1.52 7.72 -51.93 -0.40 1.12 16 27 H 0.07 0.89 6.36 -51.93 -0.33 0.56 16 28 H 0.04 0.99 8.07 -51.93 -0.42 0.57 16 29 H 0.05 1.34 7.42 -51.93 -0.39 0.96 16 30 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 31 H 0.41 5.93 6.55 -40.82 -0.27 5.66 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.57 8.12 -51.93 -0.42 0.15 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.17 1.78 8.06 -52.49 -0.42 1.36 16 LS Contribution 319.06 15.07 4.81 4.81 Total: -1.00 -31.46 319.06 -8.25 -39.71 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -4.30 Total: 2.76 kcal Atomic # 6 Polarization: 6.21 SS G_CDS: -1.72 Total: 4.49 kcal Atomic # 7 Polarization: -57.26 SS G_CDS: 0.08 Total: -57.18 kcal Atomic # 8 Polarization: -13.04 SS G_CDS: 0.07 Total: -12.97 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: 4.22 SS G_CDS: -2.17 Total: 2.05 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.46 -8.25 -39.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291825802.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.083 kcal (2) G-P(sol) polarization free energy of solvation -31.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds