Wall clock time and date at job start Tue Mar 31 2020 05:26:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50698 * 120.00010 * 2 1 4 4 N 1.46503 * 109.47121 * 124.99956 * 3 2 1 5 5 C 1.46503 * 120.00034 * 270.00268 * 4 3 2 6 6 C 1.50703 * 109.46772 * 269.99825 * 5 4 3 7 7 H 1.08003 * 120.00015 * 359.97438 * 6 5 4 8 8 C 1.37875 * 119.99737 * 179.97438 * 6 5 4 9 9 N 1.31516 * 120.00075 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 119.99972 * 179.97438 * 8 6 5 11 11 H 1.48507 * 109.46903 * 89.99806 * 10 8 6 12 12 H 1.48492 * 109.47263 * 209.99953 * 10 8 6 13 13 H 1.48504 * 109.47194 * 330.00283 * 10 8 6 14 14 C 1.34778 * 119.99936 * 89.99911 * 4 3 2 15 15 O 1.21583 * 120.00024 * 179.97438 * 14 4 3 16 16 N 1.34775 * 119.99979 * 0.02562 * 14 4 3 17 17 C 1.39010 * 120.00009 * 180.02562 * 16 14 4 18 18 N 1.29618 * 124.94638 * 180.02562 * 17 16 14 19 19 C 1.32020 * 116.90846 * 179.97438 * 18 17 16 20 20 C 1.50706 * 122.71391 * 179.97438 * 19 18 17 21 21 C 1.33410 * 114.56974 * 0.24704 * 19 18 17 22 22 S 1.70969 * 124.94237 * 359.96900 * 17 16 14 23 23 H 1.07996 * 120.00155 * 359.97438 * 1 2 3 24 24 H 1.08002 * 119.99868 * 179.97438 * 1 2 3 25 25 H 1.08002 * 119.99778 * 179.97438 * 2 1 3 26 26 H 1.08993 * 109.47378 * 5.00039 * 3 2 1 27 27 H 1.09001 * 109.47214 * 244.99686 * 3 2 1 28 28 H 1.09000 * 109.47193 * 29.99811 * 5 4 3 29 29 H 1.08998 * 109.47297 * 150.00280 * 5 4 3 30 30 H 0.97001 * 119.99562 * 179.97438 * 9 8 6 31 31 H 0.97001 * 119.99875 * 359.97438 * 16 14 4 32 32 H 1.09001 * 109.46953 * 90.02441 * 20 19 18 33 33 H 1.09000 * 109.47318 * 210.02039 * 20 19 18 34 34 H 1.09000 * 109.47161 * 330.02669 * 20 19 18 35 35 H 1.08000 * 125.96236 * 179.72505 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1315 5 6 2.5589 1.8649 2.4249 6 6 2.8443 3.3436 2.4804 7 1 3.3041 3.8369 1.6368 8 6 2.5184 4.0667 3.6082 9 7 1.9590 3.4659 4.6357 10 14 2.8728 5.8994 3.6774 11 1 1.7006 6.6501 3.1599 12 1 3.1361 6.3000 5.0828 13 1 4.0635 6.2052 2.8442 14 6 4.2497 0.8661 0.9824 15 8 5.0219 0.8888 1.9213 16 7 4.6500 0.3762 -0.2076 17 6 5.9452 -0.1047 -0.3612 18 7 6.4299 -0.5948 -1.4589 19 6 7.6840 -1.0060 -1.4270 20 6 8.3780 -1.5975 -2.6269 21 6 8.2855 -0.8608 -0.2450 22 16 7.1311 -0.1344 0.8699 23 1 -0.5400 0.9353 0.0004 24 1 -0.5400 -0.9353 -0.0004 25 1 1.8500 -0.9353 0.0004 26 1 1.3587 2.1316 0.0896 27 1 2.6214 1.4026 -0.9314 28 1 1.4888 1.6966 2.5460 29 1 3.0990 1.3603 3.2260 30 1 1.7301 3.9746 5.4293 31 1 4.0340 0.3585 -0.9568 32 1 8.8601 -0.8028 -3.1961 33 1 9.1294 -2.3142 -2.2954 34 1 7.6464 -2.1033 -3.2570 35 1 9.3031 -1.1385 -0.0129 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291825802.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:03 Heat of formation + Delta-G solvation = 29.148790 kcal Electronic energy + Delta-G solvation = -19440.210307 eV Core-core repulsion = 16372.612427 eV Total energy + Delta-G solvation = -3067.597879 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.82108 -40.52656 -37.59084 -36.26323 -35.00764 -33.81829 -32.11474 -29.57830 -28.38691 -27.14671 -25.86382 -24.20196 -22.24124 -21.30544 -20.45084 -19.13379 -18.80286 -18.52487 -17.75122 -16.97306 -16.86748 -16.10494 -16.04854 -15.69454 -14.97210 -14.83912 -14.52881 -14.22328 -13.96855 -13.58504 -13.34416 -13.27267 -13.16952 -12.95009 -12.58633 -12.36391 -12.31460 -12.14295 -11.82230 -11.69519 -11.07988 -10.74090 -10.62935 -10.39282 -10.18321 -9.76255 -9.07522 -8.21934 -6.35982 -0.16541 0.21501 0.94174 1.20520 1.38534 1.41099 1.46689 1.52041 1.63763 2.13484 2.38892 2.79243 3.09133 3.55532 3.94953 4.11887 4.27181 4.38422 4.47501 4.68861 4.79578 4.81938 4.86381 4.95388 5.00635 5.03671 5.18655 5.39152 5.45432 5.61799 5.67598 5.76292 5.87179 6.03580 6.60109 6.71201 6.84827 7.20226 7.36894 8.85065 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.017609 B = 0.005089 C = 0.004243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.752501 B = 5500.651619 C = 6597.325517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.193 4.193 3 C 0.130 3.870 4 N -0.594 5.594 5 C 0.280 3.720 6 C -0.545 4.545 7 H 0.053 0.947 8 C 0.015 3.985 9 N -0.924 5.924 10 Si 0.964 3.036 11 H -0.264 1.264 12 H -0.281 1.281 13 H -0.275 1.275 14 C 0.695 3.305 15 O -0.589 6.589 16 N -0.629 5.629 17 C 0.256 3.744 18 N -0.532 5.532 19 C 0.071 3.929 20 C -0.071 4.071 21 C -0.318 4.318 22 S 0.202 5.798 23 H 0.105 0.895 24 H 0.117 0.883 25 H 0.108 0.892 26 H 0.093 0.907 27 H 0.095 0.905 28 H 0.033 0.967 29 H 0.007 0.993 30 H 0.268 0.732 31 H 0.426 0.574 32 H 0.084 0.916 33 H 0.097 0.903 34 H 0.072 0.928 35 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.727 -9.056 -14.001 17.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.212 4.212 3 C 0.008 3.992 4 N -0.326 5.326 5 C 0.159 3.841 6 C -0.583 4.583 7 H 0.071 0.929 8 C -0.185 4.185 9 N -0.564 5.564 10 Si 0.789 3.211 11 H -0.189 1.189 12 H -0.207 1.207 13 H -0.200 1.200 14 C 0.395 3.605 15 O -0.468 6.468 16 N -0.284 5.284 17 C -0.112 4.112 18 N -0.257 5.257 19 C -0.061 4.061 20 C -0.130 4.130 21 C -0.458 4.458 22 S 0.452 5.548 23 H 0.123 0.877 24 H 0.135 0.865 25 H 0.126 0.874 26 H 0.112 0.888 27 H 0.113 0.887 28 H 0.051 0.949 29 H 0.025 0.975 30 H 0.077 0.923 31 H 0.268 0.732 32 H 0.102 0.898 33 H 0.116 0.884 34 H 0.091 0.909 35 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 5.714 -8.639 -12.502 16.235 hybrid contribution -0.062 0.612 -0.581 0.846 sum 5.653 -8.027 -13.083 16.357 Atomic orbital electron populations 1.24087 0.95280 1.03203 0.96903 1.23256 0.97049 0.97778 1.03124 1.20873 0.92865 0.97272 0.88165 1.47407 1.08880 1.61770 1.14590 1.18784 0.94387 0.92548 0.78365 1.21675 1.40844 0.94313 1.01485 0.92871 1.25742 0.94611 1.03341 0.94811 1.70036 1.42604 1.37997 1.05745 0.85473 0.78755 0.79519 0.77397 1.18916 1.20689 1.20034 1.15940 0.83746 0.79012 0.81814 1.90818 1.53191 1.62985 1.39804 1.41870 1.10145 1.62598 1.13788 1.23293 0.91889 1.00795 0.95242 1.66211 1.14973 1.19333 1.25232 1.20438 0.87865 1.00170 0.97609 1.20437 0.99474 1.00843 0.92239 1.27495 1.07354 1.13343 0.97602 1.85404 1.00855 1.56526 1.12049 0.87697 0.86481 0.87430 0.88826 0.88710 0.94899 0.97508 0.92343 0.73249 0.89752 0.88413 0.90859 0.78004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.55 14.32 67.78 0.97 -2.58 16 2 C -0.19 -5.04 9.85 25.64 0.25 -4.79 16 3 C 0.13 3.95 5.61 85.63 0.48 4.43 16 4 N -0.59 -24.58 2.44 -848.57 -2.07 -26.65 16 5 C 0.28 14.47 5.16 85.63 0.44 14.92 16 6 C -0.54 -30.32 9.39 25.60 0.24 -30.08 16 7 H 0.05 2.95 7.81 -2.91 -0.02 2.93 16 8 C 0.01 0.82 5.46 84.65 0.46 1.28 16 9 N -0.92 -54.23 13.29 21.45 0.28 -53.95 16 10 Si 0.96 43.98 29.54 68.60 2.03 46.01 16 11 H -0.26 -11.32 7.11 99.48 0.71 -10.62 16 12 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 13 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 14 C 0.69 29.31 8.24 179.05 1.48 30.78 16 15 O -0.59 -29.31 13.38 -3.98 -0.05 -29.36 16 16 N -0.63 -21.50 5.27 -327.46 -1.73 -23.22 16 17 C 0.26 8.82 8.19 179.20 1.47 10.29 16 18 N -0.53 -16.67 10.58 -189.58 -2.01 -18.68 16 19 C 0.07 1.83 6.74 41.44 0.28 2.11 16 20 C -0.07 -1.18 10.31 71.24 0.73 -0.44 16 21 C -0.32 -7.98 11.10 66.73 0.74 -7.24 16 22 S 0.20 6.80 20.21 -56.49 -1.14 5.66 16 23 H 0.10 2.30 7.84 -2.91 -0.02 2.27 16 24 H 0.12 2.17 8.06 -2.91 -0.02 2.15 16 25 H 0.11 2.77 8.06 -2.91 -0.02 2.74 16 26 H 0.09 2.90 7.72 -2.39 -0.02 2.88 16 27 H 0.09 2.34 6.36 -2.39 -0.02 2.32 16 28 H 0.03 1.72 8.07 -2.39 -0.02 1.70 16 29 H 0.01 0.40 7.42 -2.39 -0.02 0.39 16 30 H 0.27 14.77 8.31 -92.71 -0.77 14.00 16 31 H 0.43 11.95 6.55 -92.71 -0.61 11.34 16 32 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.10 1.13 8.12 -2.39 -0.02 1.11 16 34 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.20 3.56 8.06 -2.91 -0.02 3.54 16 Total: -1.00 -69.48 319.06 3.36 -66.13 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: 0.50 Total: 15.39 kcal Atomic # 6 Polarization: 11.13 SS G_CDS: 7.55 Total: 18.67 kcal Atomic # 7 Polarization: -116.98 SS G_CDS: -5.52 Total: -122.50 kcal Atomic # 8 Polarization: -29.31 SS G_CDS: -0.05 Total: -29.36 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Atomic # 16 Polarization: 6.80 SS G_CDS: -1.14 Total: 5.66 kcal Total: -69.48 3.36 -66.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291825802.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.275 kcal (2) G-P(sol) polarization free energy of solvation -69.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds