Wall clock time and date at job start Tue Mar 31 2020 05:07:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38305 * 119.92835 * 2 1 4 4 C 1.38176 * 120.05861 * 179.97438 * 3 2 1 5 5 Cl 1.73603 * 120.04635 * 179.97438 * 4 3 2 6 6 C 1.38994 * 119.91072 * 0.26997 * 4 3 2 7 7 N 1.39982 * 120.07732 * 179.70116 * 6 4 3 8 8 C 1.34776 * 120.00136 * 204.59036 * 7 6 4 9 9 O 1.21295 * 120.00009 * 5.53014 * 8 7 6 10 10 C 1.50703 * 120.00072 * 185.52409 * 8 7 6 11 11 C 1.52995 * 109.46967 * 180.02562 * 10 8 7 12 12 C 1.50704 * 109.46986 * 180.02562 * 11 10 8 13 13 H 1.07994 * 120.00094 * 359.97438 * 12 11 10 14 14 C 1.37879 * 120.00124 * 180.02562 * 12 11 10 15 15 N 1.31517 * 119.99935 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00179 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.46722 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.47205 * 119.99923 * 16 14 12 19 19 H 1.48498 * 109.46875 * 240.00070 * 16 14 12 20 20 C 1.38813 * 119.84975 * 359.47415 * 6 4 3 21 21 C 1.38164 * 119.93762 * 0.50609 * 20 6 4 22 22 C 1.50703 * 119.95184 * 179.74782 * 21 20 6 23 23 H 1.09005 * 109.46796 * 90.00265 * 1 2 3 24 24 H 1.08994 * 109.47196 * 210.00136 * 1 2 3 25 25 H 1.08998 * 109.47570 * 330.00996 * 1 2 3 26 26 H 1.07998 * 119.96597 * 359.97438 * 3 2 1 27 27 H 0.97001 * 119.99849 * 24.59789 * 7 6 4 28 28 H 1.08996 * 109.47134 * 300.00570 * 10 8 7 29 29 H 1.09005 * 109.46568 * 60.00490 * 10 8 7 30 30 H 1.09004 * 109.47356 * 299.99826 * 11 10 8 31 31 H 1.08997 * 109.47463 * 60.00432 * 11 10 8 32 32 H 0.97000 * 119.99737 * 180.02562 * 15 14 12 33 33 H 1.07995 * 120.03031 * 180.27437 * 20 6 4 34 34 H 1.09002 * 109.46579 * 270.02044 * 22 21 20 35 35 H 1.09004 * 109.47244 * 30.01540 * 22 21 20 36 36 H 1.08997 * 109.46954 * 150.02220 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1986 0.0000 4 6 3.5787 1.2018 0.0005 5 17 4.4446 2.7065 -0.0001 6 6 4.2746 -0.0014 -0.0046 7 7 5.6744 -0.0023 -0.0104 8 6 6.3456 -1.0631 -0.5009 9 8 5.7406 -1.9726 -1.0282 10 6 7.8478 -1.1193 -0.3942 11 6 8.3555 -2.4180 -1.0238 12 6 9.8577 -2.4745 -0.9165 13 1 10.3963 -1.6649 -0.4468 14 6 10.5445 -3.5593 -1.4192 15 7 9.8886 -4.5450 -1.9917 16 14 12.4065 -3.6289 -1.2869 17 1 12.9003 -2.4058 -0.6047 18 1 12.8026 -4.8264 -0.5031 19 1 12.9966 -3.7102 -2.6472 20 6 3.5783 -1.2023 0.0008 21 6 2.1966 -1.1982 0.0007 22 6 1.4404 -2.5017 0.0008 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 -0.8899 0.5138 25 1 -0.3634 0.8900 0.5137 26 1 1.6553 2.1329 -0.0004 27 1 6.1613 0.7606 0.3387 28 1 8.2814 -0.2679 -0.9187 29 1 8.1389 -1.0860 0.6557 30 1 7.9220 -3.2697 -0.4996 31 1 8.0644 -2.4509 -2.0736 32 1 10.3717 -5.3083 -2.3449 33 1 4.1160 -2.1388 0.0013 34 1 1.2585 -2.8162 -1.0269 35 1 2.0277 -3.2625 0.5150 36 1 0.4880 -2.3692 0.5142 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000296082100.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:42 Heat of formation + Delta-G solvation = -38.690528 kcal Electronic energy + Delta-G solvation = -18999.536760 eV Core-core repulsion = 15894.660690 eV Total energy + Delta-G solvation = -3104.876070 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.092 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.53360 -38.78629 -36.71373 -35.08289 -33.55923 -32.37599 -31.86583 -30.78564 -27.50574 -26.64206 -25.31006 -22.81936 -21.91915 -20.62611 -19.79508 -17.45565 -17.02262 -16.12411 -15.90396 -15.51437 -14.84528 -14.48856 -14.41830 -14.06088 -13.61030 -13.39118 -13.27710 -12.91475 -12.81769 -12.46130 -12.22624 -12.14009 -11.64530 -11.41007 -11.24322 -11.18187 -11.01850 -10.97045 -10.61746 -10.18581 -10.04001 -9.73090 -9.27151 -9.10749 -8.66478 -8.36927 -7.90033 -6.00406 -4.04948 1.05503 1.24288 2.02528 2.94761 3.22279 3.30560 3.38133 3.41407 3.63319 4.44236 4.62952 4.71014 4.94776 4.98027 5.10974 5.34192 5.35012 5.38883 5.49643 5.54480 5.61439 5.73995 5.87835 5.95357 6.06748 6.10041 6.11320 6.20127 6.43852 6.59508 6.77601 6.94538 7.57223 7.69151 7.77891 8.00635 8.30518 8.49039 9.02865 9.59047 11.10519 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.025084 B = 0.003673 C = 0.003239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.981161 B = 7620.874553 C = 8642.099459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.108 4.108 3 C -0.086 4.086 4 C -0.080 4.080 5 Cl -0.073 7.073 6 C 0.173 3.827 7 N -0.680 5.680 8 C 0.511 3.489 9 O -0.509 6.509 10 C -0.129 4.129 11 C 0.037 3.963 12 C -0.528 4.528 13 H 0.057 0.943 14 C 0.058 3.942 15 N -0.889 5.889 16 Si 0.893 3.107 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 C -0.122 4.122 21 C -0.058 4.058 22 C -0.117 4.117 23 H 0.069 0.931 24 H 0.071 0.929 25 H 0.064 0.936 26 H 0.132 0.868 27 H 0.411 0.589 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.025 0.975 31 H 0.025 0.975 32 H 0.261 0.739 33 H 0.158 0.842 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.952 11.884 6.134 22.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.109 4.109 3 C -0.105 4.105 4 C -0.109 4.109 5 Cl -0.044 7.044 6 C 0.076 3.924 7 N -0.325 5.325 8 C 0.301 3.699 9 O -0.382 6.382 10 C -0.169 4.169 11 C -0.001 4.001 12 C -0.566 4.566 13 H 0.075 0.925 14 C -0.144 4.144 15 N -0.527 5.527 16 Si 0.721 3.279 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.210 1.210 20 C -0.143 4.143 21 C -0.059 4.059 22 C -0.174 4.174 23 H 0.088 0.912 24 H 0.090 0.910 25 H 0.083 0.917 26 H 0.150 0.850 27 H 0.247 0.753 28 H 0.103 0.897 29 H 0.104 0.896 30 H 0.043 0.957 31 H 0.043 0.957 32 H 0.070 0.930 33 H 0.175 0.825 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -18.166 11.140 5.661 22.049 hybrid contribution 1.461 0.606 0.156 1.589 sum -16.705 11.746 5.818 21.233 Atomic orbital electron populations 1.20788 0.90790 1.02779 1.02354 1.19590 0.96139 0.91824 1.03383 1.20622 0.90996 0.98473 1.00447 1.20590 0.92603 0.85360 1.12375 1.98346 1.76984 1.31787 1.97282 1.17620 0.83913 0.92272 0.98583 1.44050 1.03760 1.22236 1.62458 1.21896 0.91947 0.80308 0.75735 1.90637 1.70066 1.36757 1.40746 1.21941 0.86856 1.04693 1.03430 1.18929 0.95180 0.89370 0.96616 1.21227 0.91785 1.04911 1.38684 0.92467 1.25023 0.98470 0.95669 0.95195 1.70003 1.35427 1.08583 1.38729 0.86523 0.85635 0.77980 0.77758 1.19718 1.20989 1.20987 1.21382 0.93394 0.98087 1.01393 1.19770 0.93142 0.95187 0.97825 1.20878 0.99792 0.93874 1.02817 0.91215 0.91029 0.91726 0.84975 0.75266 0.89723 0.89602 0.95668 0.95652 0.92955 0.82499 0.90676 0.91139 0.91062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.85 9.60 36.00 0.35 -0.50 16 2 C -0.11 -1.19 5.88 -104.59 -0.62 -1.80 16 3 C -0.09 -0.97 9.48 -39.58 -0.38 -1.35 16 4 C -0.08 -1.04 6.34 -39.32 -0.25 -1.29 16 5 Cl -0.07 -0.84 27.78 -51.86 -1.44 -2.28 16 6 C 0.17 2.61 6.43 -83.64 -0.54 2.07 16 7 N -0.68 -10.38 5.20 -9.83 -0.05 -10.43 16 8 C 0.51 9.66 7.64 -10.98 -0.08 9.57 16 9 O -0.51 -11.33 13.15 5.54 0.07 -11.26 16 10 C -0.13 -2.55 5.64 -27.88 -0.16 -2.71 16 11 C 0.04 0.96 4.26 -27.88 -0.12 0.84 16 12 C -0.53 -14.73 9.11 -34.44 -0.31 -15.04 16 13 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 14 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 15 N -0.89 -27.03 13.29 55.43 0.74 -26.29 16 16 Si 0.89 21.47 29.54 -169.99 -5.02 16.44 16 17 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 20 C -0.12 -1.88 8.37 -39.40 -0.33 -2.21 16 21 C -0.06 -0.73 5.88 -104.64 -0.62 -1.35 16 22 C -0.12 -1.17 9.60 36.01 0.35 -0.83 16 23 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.07 0.48 5.93 -51.93 -0.31 0.17 16 25 H 0.06 0.41 8.08 -51.93 -0.42 -0.01 16 26 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 27 H 0.41 5.23 7.76 -40.82 -0.32 4.91 16 28 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 29 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 30 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 31 H 0.03 0.73 8.10 -51.93 -0.42 0.30 16 32 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 33 H 0.16 2.75 5.79 -52.49 -0.30 2.44 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.07 0.72 8.08 -51.93 -0.42 0.30 16 36 H 0.07 0.55 5.94 -51.93 -0.31 0.24 16 LS Contribution 318.41 15.07 4.80 4.80 Total: -1.00 -32.22 318.41 -8.28 -40.50 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -4.57 Total: 1.54 kcal Atomic # 6 Polarization: -10.21 SS G_CDS: -2.80 Total: -13.01 kcal Atomic # 7 Polarization: -37.41 SS G_CDS: 0.69 Total: -36.72 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: 0.07 Total: -11.26 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 17 Polarization: -0.84 SS G_CDS: -1.44 Total: -2.28 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -32.22 -8.28 -40.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296082100.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.809 kcal (2) G-P(sol) polarization free energy of solvation -32.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds