Wall clock time and date at job start Tue Mar 31 2020 05:21:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38620 * 120.39722 * 2 1 4 4 C 1.38625 * 118.56865 * 179.97438 * 3 2 1 5 5 C 1.50694 * 120.40148 * 180.02562 * 4 3 2 6 6 N 1.32264 * 119.20289 * 359.97438 * 4 3 2 7 7 C 1.32561 * 120.73212 * 0.02562 * 6 4 3 8 8 S 1.76203 * 119.22130 * 180.02562 * 7 6 4 9 9 C 1.80998 * 99.99800 * 179.97438 * 8 7 6 10 10 C 1.50705 * 109.46814 * 179.97438 * 9 8 7 11 11 O 1.21296 * 120.00223 * 0.02562 * 10 9 8 12 12 N 1.34775 * 119.99848 * 179.97438 * 10 9 8 13 13 C 1.46500 * 120.00206 * 359.97438 * 12 10 9 14 14 C 1.37102 * 120.00175 * 180.02562 * 12 10 9 15 15 H 1.08007 * 119.99211 * 22.40681 * 14 12 10 16 16 C 1.38945 * 120.00240 * 202.41023 * 14 12 10 17 17 N 1.31414 * 120.00057 * 11.58477 * 16 14 12 18 18 Si 1.86804 * 119.99963 * 191.59035 * 16 14 12 19 19 H 1.48500 * 109.46958 * 89.99739 * 18 16 14 20 20 H 1.48497 * 109.46687 * 210.00028 * 18 16 14 21 21 H 1.48500 * 109.47063 * 329.99697 * 18 16 14 22 22 N 1.32256 * 120.39667 * 179.71881 * 2 1 3 23 23 H 1.09004 * 109.46848 * 89.99889 * 1 2 3 24 24 H 1.08997 * 109.47150 * 210.00314 * 1 2 3 25 25 H 1.09004 * 109.46993 * 330.00608 * 1 2 3 26 26 H 1.07995 * 120.72128 * 359.94894 * 3 2 1 27 27 H 1.08995 * 109.47626 * 89.99226 * 5 4 3 28 28 H 1.09004 * 109.47223 * 209.99854 * 5 4 3 29 29 H 1.09004 * 109.46779 * 329.99074 * 5 4 3 30 30 H 1.08997 * 109.46946 * 299.99330 * 9 8 7 31 31 H 1.08997 * 109.47337 * 59.99991 * 9 8 7 32 32 H 1.08996 * 109.47018 * 92.16264 * 13 12 10 33 33 H 1.08992 * 109.47294 * 212.16507 * 13 12 10 34 34 H 1.09002 * 109.46877 * 332.16010 * 13 12 10 35 35 H 0.96996 * 120.00056 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2084 1.1957 0.0000 4 6 3.5939 1.1514 0.0005 5 6 4.3976 2.4262 0.0011 6 7 4.2021 -0.0231 0.0016 7 6 3.5017 -1.1486 0.0015 8 16 4.3529 -2.6914 0.0036 9 6 2.9439 -3.8276 0.0036 10 6 3.4449 -5.2489 0.0046 11 8 4.6372 -5.4718 0.0058 12 7 2.5681 -6.2725 0.0053 13 6 1.1280 -6.0034 0.0056 14 6 3.0237 -7.5655 0.0068 15 1 4.0187 -7.7870 0.3640 16 6 2.2056 -8.5910 -0.4512 17 7 1.0941 -8.3081 -1.0927 18 14 2.6857 -10.3718 -0.1550 19 1 2.1157 -10.8297 1.1376 20 1 2.1573 -11.2165 -1.2560 21 1 4.1658 -10.4848 -0.1110 22 7 2.1762 -1.1407 0.0056 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 -0.8899 0.5139 25 1 -0.3633 0.8901 0.5138 26 1 1.6868 2.1413 -0.0008 27 1 4.5909 2.7334 1.0289 28 1 5.3445 2.2590 -0.5123 29 1 3.8388 3.2082 -0.5129 30 1 2.3380 -3.6549 0.8930 31 1 2.3392 -3.6565 -0.8870 32 1 0.7634 -5.9752 -1.0212 33 1 0.6112 -6.7914 0.5532 34 1 0.9379 -5.0431 0.4852 35 1 0.5229 -9.0239 -1.4121 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330751593.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:39 Heat of formation + Delta-G solvation = 14.966889 kcal Electronic energy + Delta-G solvation = -19006.529432 eV Core-core repulsion = 15938.316580 eV Total energy + Delta-G solvation = -3068.212853 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.90188 -38.43231 -34.87144 -34.75201 -33.31593 -31.77952 -29.74914 -29.01542 -27.67110 -26.18093 -24.56005 -24.11460 -21.76992 -19.33720 -17.66259 -17.38288 -16.91527 -16.10086 -15.66294 -15.48485 -14.80644 -14.48115 -14.40472 -13.91426 -13.65596 -13.32228 -13.06748 -13.00176 -12.66447 -12.54248 -12.36194 -12.30711 -11.59462 -11.35596 -11.25455 -11.00104 -10.87966 -10.37698 -10.35170 -10.32426 -10.02954 -9.87485 -9.27509 -9.07298 -8.57590 -7.76890 -7.44700 -6.36296 -3.93535 0.78970 1.05627 1.48665 2.47918 3.14249 3.23794 3.29779 3.59757 3.76964 4.02720 4.10515 4.22730 4.54465 4.80697 4.99153 5.01814 5.07358 5.12623 5.29083 5.35804 5.38310 5.60234 5.62099 5.67412 5.70637 5.80691 5.93965 6.29898 6.32173 6.83729 7.00125 7.18577 7.52664 7.95477 8.03313 8.39977 9.09887 9.33117 9.86110 10.67148 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.034562 B = 0.003797 C = 0.003454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.946102 B = 7372.507890 C = 8105.067435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.191 3.809 3 C -0.252 4.252 4 C 0.188 3.812 5 C -0.104 4.104 6 N -0.512 5.512 7 C 0.292 3.708 8 S 0.086 5.914 9 C -0.129 4.129 10 C 0.455 3.545 11 O -0.578 6.578 12 N -0.435 5.435 13 C 0.110 3.890 14 C -0.307 4.307 15 H 0.102 0.898 16 C 0.032 3.968 17 N -0.881 5.881 18 Si 0.930 3.070 19 H -0.277 1.277 20 H -0.283 1.283 21 H -0.268 1.268 22 N -0.533 5.533 23 H 0.085 0.915 24 H 0.084 0.916 25 H 0.079 0.921 26 H 0.143 0.857 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.106 0.894 31 H 0.108 0.892 32 H 0.060 0.940 33 H 0.071 0.929 34 H 0.029 0.971 35 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.813 18.743 2.030 19.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.042 3.958 3 C -0.279 4.279 4 C 0.038 3.962 5 C -0.161 4.161 6 N -0.231 5.231 7 C -0.083 4.083 8 S 0.323 5.677 9 C -0.281 4.281 10 C 0.241 3.759 11 O -0.463 6.463 12 N -0.153 5.153 13 C -0.034 4.034 14 C -0.435 4.435 15 H 0.119 0.881 16 C -0.172 4.172 17 N -0.520 5.520 18 Si 0.756 3.244 19 H -0.203 1.203 20 H -0.209 1.209 21 H -0.192 1.192 22 N -0.253 5.253 23 H 0.104 0.896 24 H 0.102 0.898 25 H 0.098 0.902 26 H 0.160 0.840 27 H 0.103 0.897 28 H 0.101 0.899 29 H 0.098 0.902 30 H 0.125 0.875 31 H 0.126 0.874 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.047 0.953 35 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.712 17.253 1.948 17.447 hybrid contribution -2.039 0.282 -0.002 2.058 sum -3.751 17.536 1.947 18.038 Atomic orbital electron populations 1.20786 0.87820 1.04019 1.03719 1.21739 0.97443 0.88265 0.88381 1.22369 0.95543 1.00150 1.09795 1.21745 0.91633 0.93942 0.88832 1.20760 1.00229 0.91543 1.03596 1.68385 1.40254 0.97318 1.17113 1.25829 0.89567 0.99563 0.93297 1.86602 1.06440 0.86579 1.88073 1.23770 1.00283 0.96621 1.07430 1.19194 0.86935 0.84565 0.85182 1.90560 1.15375 1.84238 1.56175 1.43484 1.04969 1.05035 1.61851 1.21579 0.82030 0.97810 1.01994 1.19725 1.02318 0.80824 1.40622 0.88058 1.25377 0.96067 1.00611 0.95138 1.70002 1.13359 1.33370 1.35235 0.85865 0.79229 0.81408 0.77876 1.20292 1.20881 1.19229 1.68791 1.08045 1.30334 1.18102 0.89623 0.89759 0.90237 0.83961 0.89724 0.89865 0.90216 0.87536 0.87359 0.92126 0.91028 0.95269 0.92128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.92 10.22 36.01 0.37 -0.55 16 2 C 0.19 2.41 6.82 -82.27 -0.56 1.85 16 3 C -0.25 -2.75 9.53 -39.30 -0.37 -3.12 16 4 C 0.19 2.34 6.82 -82.27 -0.56 1.78 16 5 C -0.10 -0.83 10.22 36.00 0.37 -0.47 16 6 N -0.51 -8.27 10.34 -9.67 -0.10 -8.37 16 7 C 0.29 5.07 7.85 -90.84 -0.71 4.36 16 8 S 0.09 1.66 21.38 -107.50 -2.30 -0.63 16 9 C -0.13 -2.56 3.81 36.01 0.14 -2.42 16 10 C 0.46 11.33 7.65 -10.98 -0.08 11.25 16 11 O -0.58 -16.22 15.55 5.54 0.09 -16.13 16 12 N -0.44 -11.25 3.02 -122.19 -0.37 -11.62 16 13 C 0.11 2.45 8.52 59.85 0.51 2.96 16 14 C -0.31 -8.57 9.29 -14.93 -0.14 -8.71 16 15 H 0.10 2.95 7.41 -52.48 -0.39 2.57 16 16 C 0.03 0.83 5.11 -17.47 -0.09 0.74 16 17 N -0.88 -23.29 10.62 55.50 0.59 -22.70 16 18 Si 0.93 20.69 29.57 -169.99 -5.03 15.66 16 19 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 20 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 21 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 22 N -0.53 -8.56 9.08 -9.67 -0.09 -8.65 16 23 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.08 0.48 8.10 -51.93 -0.42 0.06 16 26 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 27 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.08 0.44 8.10 -51.93 -0.42 0.02 16 30 H 0.11 1.96 7.37 -51.92 -0.38 1.57 16 31 H 0.11 2.06 8.08 -51.92 -0.42 1.64 16 32 H 0.06 1.40 7.54 -51.93 -0.39 1.01 16 33 H 0.07 1.66 7.06 -51.93 -0.37 1.30 16 34 H 0.03 0.54 6.36 -51.93 -0.33 0.21 16 35 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 LS Contribution 315.66 15.07 4.76 4.76 Total: -1.00 -32.73 315.66 -7.96 -40.69 By element: Atomic # 1 Polarization: 3.70 SS G_CDS: -4.37 Total: -0.67 kcal Atomic # 6 Polarization: 8.80 SS G_CDS: -1.14 Total: 7.66 kcal Atomic # 7 Polarization: -51.37 SS G_CDS: 0.03 Total: -51.34 kcal Atomic # 8 Polarization: -16.22 SS G_CDS: 0.09 Total: -16.13 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.03 Total: 15.66 kcal Atomic # 16 Polarization: 1.66 SS G_CDS: -2.30 Total: -0.63 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -32.73 -7.96 -40.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330751593.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.656 kcal (2) G-P(sol) polarization free energy of solvation -32.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds