Wall clock time and date at job start Tue Mar 31 2020 05:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38620 * 120.39722 * 2 1 4 4 C 1.38625 * 118.56865 * 179.97438 * 3 2 1 5 5 C 1.50694 * 120.40148 * 180.02562 * 4 3 2 6 6 N 1.32264 * 119.20289 * 359.97438 * 4 3 2 7 7 C 1.32561 * 120.73212 * 0.02562 * 6 4 3 8 8 S 1.76203 * 119.22130 * 180.02562 * 7 6 4 9 9 C 1.80998 * 99.99800 * 179.97438 * 8 7 6 10 10 C 1.50705 * 109.46814 * 179.97438 * 9 8 7 11 11 O 1.21296 * 120.00223 * 0.02562 * 10 9 8 12 12 N 1.34775 * 119.99848 * 179.97438 * 10 9 8 13 13 C 1.46500 * 120.00206 * 359.97438 * 12 10 9 14 14 C 1.37102 * 120.00175 * 180.02562 * 12 10 9 15 15 H 1.08007 * 119.99211 * 22.40681 * 14 12 10 16 16 C 1.38945 * 120.00240 * 202.41023 * 14 12 10 17 17 N 1.31414 * 120.00057 * 11.58477 * 16 14 12 18 18 Si 1.86804 * 119.99963 * 191.59035 * 16 14 12 19 19 H 1.48500 * 109.46958 * 89.99739 * 18 16 14 20 20 H 1.48497 * 109.46687 * 210.00028 * 18 16 14 21 21 H 1.48500 * 109.47063 * 329.99697 * 18 16 14 22 22 N 1.32256 * 120.39667 * 179.71881 * 2 1 3 23 23 H 1.09004 * 109.46848 * 89.99889 * 1 2 3 24 24 H 1.08997 * 109.47150 * 210.00314 * 1 2 3 25 25 H 1.09004 * 109.46993 * 330.00608 * 1 2 3 26 26 H 1.07995 * 120.72128 * 359.94894 * 3 2 1 27 27 H 1.08995 * 109.47626 * 89.99226 * 5 4 3 28 28 H 1.09004 * 109.47223 * 209.99854 * 5 4 3 29 29 H 1.09004 * 109.46779 * 329.99074 * 5 4 3 30 30 H 1.08997 * 109.46946 * 299.99330 * 9 8 7 31 31 H 1.08997 * 109.47337 * 59.99991 * 9 8 7 32 32 H 1.08996 * 109.47018 * 92.16264 * 13 12 10 33 33 H 1.08992 * 109.47294 * 212.16507 * 13 12 10 34 34 H 1.09002 * 109.46877 * 332.16010 * 13 12 10 35 35 H 0.96996 * 120.00056 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2084 1.1957 0.0000 4 6 3.5939 1.1514 0.0005 5 6 4.3976 2.4262 0.0011 6 7 4.2021 -0.0231 0.0016 7 6 3.5017 -1.1486 0.0015 8 16 4.3529 -2.6914 0.0036 9 6 2.9439 -3.8276 0.0036 10 6 3.4449 -5.2489 0.0046 11 8 4.6372 -5.4718 0.0058 12 7 2.5681 -6.2725 0.0053 13 6 1.1280 -6.0034 0.0056 14 6 3.0237 -7.5655 0.0068 15 1 4.0187 -7.7870 0.3640 16 6 2.2056 -8.5910 -0.4512 17 7 1.0941 -8.3081 -1.0927 18 14 2.6857 -10.3718 -0.1550 19 1 2.1157 -10.8297 1.1376 20 1 2.1573 -11.2165 -1.2560 21 1 4.1658 -10.4848 -0.1110 22 7 2.1762 -1.1407 0.0056 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 -0.8899 0.5139 25 1 -0.3633 0.8901 0.5138 26 1 1.6868 2.1413 -0.0008 27 1 4.5909 2.7334 1.0289 28 1 5.3445 2.2590 -0.5123 29 1 3.8388 3.2082 -0.5129 30 1 2.3380 -3.6549 0.8930 31 1 2.3392 -3.6565 -0.8870 32 1 0.7634 -5.9752 -1.0212 33 1 0.6112 -6.7914 0.5532 34 1 0.9379 -5.0431 0.4852 35 1 0.5229 -9.0239 -1.4121 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330751593.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:38 Heat of formation + Delta-G solvation = -6.198909 kcal Electronic energy + Delta-G solvation = -19007.447250 eV Core-core repulsion = 15938.316580 eV Total energy + Delta-G solvation = -3069.130670 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.93789 -40.40213 -36.77759 -35.83180 -34.28326 -33.79597 -31.18851 -30.19365 -28.39961 -28.07789 -26.26629 -25.49105 -22.69971 -21.16539 -19.01411 -18.70459 -18.65443 -17.97484 -16.81385 -16.60150 -16.48046 -16.24063 -15.97718 -15.33713 -14.47821 -14.39448 -14.31501 -14.28970 -14.00035 -13.65244 -13.44099 -13.31326 -13.21932 -13.11510 -12.98550 -12.68189 -12.43646 -12.16117 -12.04669 -11.40602 -11.36438 -11.05867 -10.84900 -10.60588 -10.33332 -9.78899 -8.85778 -8.38066 -6.04802 -0.25598 0.08505 0.10486 1.04377 1.35533 1.41280 1.53855 1.86075 2.25466 2.56701 2.93332 3.03634 3.09166 3.40661 3.57834 3.84385 4.05038 4.12123 4.27803 4.31491 4.44950 4.60637 4.70186 4.74750 4.75663 4.88366 4.95512 4.98758 5.19801 5.32827 5.41357 5.48330 5.99522 6.02200 6.37729 6.88613 7.06455 7.33277 7.86977 8.63812 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.034562 B = 0.003797 C = 0.003454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.946102 B = 7372.507890 C = 8105.067435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.172 3.828 3 C -0.229 4.229 4 C 0.170 3.830 5 C -0.100 4.100 6 N -0.538 5.538 7 C 0.279 3.721 8 S 0.036 5.964 9 C -0.102 4.102 10 C 0.445 3.555 11 O -0.619 6.619 12 N -0.449 5.449 13 C 0.120 3.880 14 C -0.348 4.348 15 H 0.075 0.925 16 C 0.001 3.999 17 N -0.892 5.892 18 Si 0.994 3.006 19 H -0.263 1.263 20 H -0.272 1.272 21 H -0.276 1.276 22 N -0.553 5.553 23 H 0.097 0.903 24 H 0.075 0.925 25 H 0.113 0.887 26 H 0.190 0.810 27 H 0.099 0.901 28 H 0.074 0.926 29 H 0.113 0.887 30 H 0.122 0.878 31 H 0.116 0.884 32 H 0.050 0.950 33 H 0.059 0.941 34 H 0.066 0.934 35 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.862 21.029 2.167 21.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.024 3.976 3 C -0.254 4.254 4 C 0.022 3.978 5 C -0.157 4.157 6 N -0.258 5.258 7 C -0.097 4.097 8 S 0.272 5.728 9 C -0.253 4.253 10 C 0.233 3.767 11 O -0.507 6.507 12 N -0.167 5.167 13 C -0.023 4.023 14 C -0.476 4.476 15 H 0.093 0.907 16 C -0.201 4.201 17 N -0.530 5.530 18 Si 0.817 3.183 19 H -0.188 1.188 20 H -0.196 1.196 21 H -0.201 1.201 22 N -0.274 5.274 23 H 0.116 0.884 24 H 0.094 0.906 25 H 0.131 0.869 26 H 0.208 0.792 27 H 0.117 0.883 28 H 0.093 0.907 29 H 0.131 0.869 30 H 0.140 0.860 31 H 0.134 0.866 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.819 19.591 2.082 20.068 hybrid contribution -1.469 -0.210 -0.067 1.485 sum -5.288 19.382 2.015 20.191 Atomic orbital electron populations 1.20915 0.84921 1.05271 1.04796 1.22522 0.99315 0.87960 0.87821 1.22906 0.94945 1.01489 1.06091 1.22574 0.93175 0.93953 0.88060 1.20905 0.99786 0.90131 1.04870 1.68328 1.41327 0.98211 1.17898 1.25200 0.90155 0.98630 0.95727 1.86613 1.07437 0.88880 1.89903 1.23387 1.00270 0.93339 1.08345 1.19939 0.86432 0.86369 0.83951 1.90520 1.17190 1.85375 1.57582 1.43734 1.06385 1.04797 1.61770 1.21531 0.79981 0.99248 1.01559 1.19698 1.02174 0.82660 1.43065 0.90674 1.26138 0.95771 1.04097 0.94134 1.70067 1.13593 1.34821 1.34566 0.84929 0.78387 0.76455 0.78546 1.18833 1.19632 1.20079 1.68735 1.07445 1.32475 1.18722 0.88438 0.90628 0.86891 0.79234 0.88253 0.90670 0.86854 0.86015 0.86591 0.93105 0.92237 0.91547 0.91424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.40 10.22 71.24 0.73 -0.67 16 2 C 0.17 3.85 6.82 42.59 0.29 4.14 16 3 C -0.23 -4.09 9.53 22.45 0.21 -3.87 16 4 C 0.17 3.81 6.82 42.58 0.29 4.10 16 5 C -0.10 -1.28 10.22 71.23 0.73 -0.55 16 6 N -0.54 -17.14 10.34 -184.51 -1.91 -19.05 16 7 C 0.28 9.72 7.85 180.42 1.42 11.14 16 8 S 0.04 1.45 21.38 -56.49 -1.21 0.24 16 9 C -0.10 -4.11 3.81 71.24 0.27 -3.84 16 10 C 0.45 22.99 7.65 87.66 0.67 23.66 16 11 O -0.62 -36.53 15.55 -3.08 -0.05 -36.58 16 12 N -0.45 -23.85 3.02 -658.89 -1.99 -25.84 16 13 C 0.12 5.36 8.52 127.77 1.09 6.45 16 14 C -0.35 -20.12 9.29 84.04 0.78 -19.34 16 15 H 0.08 4.63 7.41 -2.91 -0.02 4.61 16 16 C 0.00 0.06 5.11 84.92 0.43 0.49 16 17 N -0.89 -47.10 10.62 21.66 0.23 -46.87 16 18 Si 0.99 42.55 29.57 68.60 2.03 44.58 16 19 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 20 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 21 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 22 N -0.55 -17.22 9.08 -184.51 -1.67 -18.90 16 23 H 0.10 1.14 8.14 -2.38 -0.02 1.12 16 24 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.11 0.79 8.10 -2.38 -0.02 0.77 16 26 H 0.19 1.51 8.06 -2.91 -0.02 1.48 16 27 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.11 0.69 8.10 -2.38 -0.02 0.67 16 30 H 0.12 4.47 7.37 -2.40 -0.02 4.45 16 31 H 0.12 4.46 8.08 -2.40 -0.02 4.44 16 32 H 0.05 2.35 7.54 -2.39 -0.02 2.33 16 33 H 0.06 2.77 7.06 -2.39 -0.02 2.75 16 34 H 0.07 2.42 6.36 -2.39 -0.02 2.40 16 35 H 0.28 13.55 8.31 -92.71 -0.77 12.78 16 Total: -1.00 -74.75 315.66 3.45 -71.30 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: 1.10 Total: 9.39 kcal Atomic # 6 Polarization: 14.80 SS G_CDS: 6.91 Total: 21.71 kcal Atomic # 7 Polarization: -105.31 SS G_CDS: -5.34 Total: -110.65 kcal Atomic # 8 Polarization: -36.53 SS G_CDS: -0.05 Total: -36.58 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Atomic # 16 Polarization: 1.45 SS G_CDS: -1.21 Total: 0.24 kcal Total: -74.75 3.45 -71.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330751593.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.105 kcal (2) G-P(sol) polarization free energy of solvation -74.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds