Wall clock time and date at job start Tue Mar 31 2020 05:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50698 * 115.54947 * 2 1 4 4 O 1.21283 * 119.99824 * 145.58075 * 3 2 1 5 5 N 1.34777 * 119.99912 * 325.57855 * 3 2 1 6 6 C 1.39237 * 119.99789 * 185.12683 * 5 3 2 7 7 C 1.39488 * 119.82848 * 213.38451 * 6 5 3 8 8 C 1.36376 * 120.16656 * 180.02562 * 7 6 5 9 9 C 1.40874 * 119.82608 * 359.97438 * 8 7 6 10 10 C 1.41158 * 120.16075 * 179.97438 * 9 8 7 11 11 H 1.08000 * 119.99451 * 334.52433 * 10 9 8 12 12 C 1.39904 * 119.99772 * 154.52927 * 10 9 8 13 13 N 1.30867 * 120.00410 * 334.37795 * 12 10 9 14 14 Si 1.86806 * 119.99589 * 154.38027 * 12 10 9 15 15 H 1.48500 * 109.46974 * 179.97438 * 14 12 10 16 16 H 1.48495 * 109.47359 * 300.00070 * 14 12 10 17 17 H 1.48501 * 109.47130 * 60.00191 * 14 12 10 18 18 C 1.40861 * 119.67377 * 0.25345 * 9 8 7 19 19 C 1.36379 * 119.83086 * 359.48856 * 18 9 8 20 20 C 1.53008 * 117.49617 * 145.66638 * 2 1 3 21 21 C 1.53001 * 117.49827 * 214.32644 * 2 1 3 22 22 F 1.39896 * 117.50178 * 359.97438 * 21 2 1 23 23 F 1.39907 * 117.49626 * 145.00028 * 21 2 1 24 24 H 1.08998 * 109.47060 * 34.42274 * 1 2 3 25 25 H 1.08999 * 109.47003 * 154.41812 * 1 2 3 26 26 H 1.08996 * 109.47544 * 274.41778 * 1 2 3 27 27 H 0.97000 * 120.00078 * 5.12703 * 5 3 2 28 28 H 1.07997 * 119.91634 * 359.97438 * 7 6 5 29 29 H 1.07998 * 120.08689 * 179.97438 * 8 7 6 30 30 H 0.96999 * 120.00018 * 354.26950 * 13 12 10 31 31 H 1.08001 * 120.08887 * 179.72407 * 18 9 8 32 32 H 1.08000 * 119.91813 * 180.22956 * 19 18 9 33 33 H 1.09000 * 117.49738 * 215.00450 * 20 2 1 34 34 H 1.08997 * 117.49970 * 0.02776 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1799 1.3596 0.0000 4 8 3.2232 1.5330 0.5937 5 7 1.6019 2.3829 -0.6598 6 6 2.2538 3.6099 -0.7500 7 6 1.5113 4.7906 -0.7645 8 6 2.1426 5.9962 -0.8532 9 6 3.5484 6.0469 -0.9298 10 6 4.2091 7.2909 -1.0223 11 1 3.6958 8.1453 -1.4381 12 6 5.5289 7.4168 -0.5755 13 7 5.9878 6.6087 0.3458 14 14 6.6360 8.7387 -1.2942 15 1 7.9752 8.6630 -0.6569 16 1 6.7713 8.5292 -2.7580 17 1 6.0415 10.0753 -1.0382 18 6 4.2910 4.8500 -0.9195 19 6 3.6459 3.6522 -0.8250 20 6 2.2364 -1.1208 0.7655 21 6 2.2364 -1.1208 -0.7653 22 9 1.4340 -2.0675 -1.4111 23 9 3.4364 -0.8049 -1.4116 24 1 -0.3633 0.8477 -0.5809 25 1 -0.3633 -0.9269 -0.4437 26 1 -0.3634 0.0792 1.0245 27 1 0.7317 2.2645 -1.0718 28 1 0.4336 4.7500 -0.7061 29 1 1.5664 6.9095 -0.8647 30 1 5.3914 5.9777 0.7783 31 1 5.3687 4.8809 -0.9824 32 1 4.2141 2.7338 -0.8133 33 1 3.1713 -0.8746 1.2691 34 1 1.6112 -1.8583 1.2687 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334984609.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:07 Heat of formation + Delta-G solvation = -87.765485 kcal Electronic energy + Delta-G solvation = -21453.646615 eV Core-core repulsion = 17794.845814 eV Total energy + Delta-G solvation = -3658.800800 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.097 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.84644 -47.49829 -40.09879 -37.82300 -36.18557 -34.77415 -33.08817 -29.76196 -29.32744 -28.39927 -25.28730 -23.37320 -22.73170 -21.51498 -20.79897 -19.32202 -18.20454 -17.97575 -17.41668 -16.41997 -16.19112 -15.74647 -14.81181 -14.49384 -14.17889 -14.12322 -14.02990 -13.80314 -13.53535 -13.40794 -13.26306 -12.71390 -12.67279 -12.41129 -12.31095 -11.95573 -11.44834 -11.14250 -11.05946 -10.94789 -10.41221 -10.24840 -10.09215 -9.84266 -9.43505 -9.20963 -8.79934 -7.80290 -7.29676 -7.12697 -4.41350 2.08925 2.70049 2.82329 2.86922 3.14572 3.20204 3.31651 3.35860 3.48433 3.91044 4.01008 4.24664 4.42068 4.54734 4.70615 5.11171 5.27827 5.30941 5.34676 5.48137 5.62770 5.75525 5.97250 6.20862 6.58284 6.77977 6.85654 7.06248 7.33038 7.40974 7.71317 7.72169 7.78024 8.06359 8.16048 8.24236 8.54758 8.73900 8.86280 10.02535 Molecular weight = 281.10amu Principal moments of inertia in cm(-1) A = 0.033373 B = 0.003926 C = 0.003707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.799974 B = 7130.140693 C = 7551.689469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.161 4.161 3 C 0.531 3.469 4 O -0.516 6.516 5 N -0.637 5.637 6 C -0.026 4.026 7 C -0.089 4.089 8 C -0.218 4.218 9 C 0.094 3.906 10 C -0.516 4.516 11 H 0.077 0.923 12 C 0.037 3.963 13 N -0.789 5.789 14 Si 1.066 2.934 15 H -0.273 1.273 16 H -0.274 1.274 17 H -0.276 1.276 18 C -0.212 4.212 19 C -0.063 4.063 20 C -0.140 4.140 21 C 0.218 3.782 22 F -0.156 7.156 23 F -0.149 7.149 24 H 0.071 0.929 25 H 0.077 0.923 26 H 0.080 0.920 27 H 0.395 0.605 28 H 0.092 0.908 29 H 0.098 0.902 30 H 0.301 0.699 31 H 0.108 0.892 32 H 0.104 0.896 33 H 0.136 0.864 34 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.266 -11.939 -0.606 15.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.165 4.165 3 C 0.316 3.684 4 O -0.391 6.391 5 N -0.280 5.280 6 C -0.118 4.118 7 C -0.109 4.109 8 C -0.238 4.238 9 C 0.090 3.910 10 C -0.543 4.543 11 H 0.095 0.905 12 C -0.186 4.186 13 N -0.412 5.412 14 Si 0.889 3.111 15 H -0.198 1.198 16 H -0.199 1.199 17 H -0.201 1.201 18 C -0.231 4.231 19 C -0.083 4.083 20 C -0.178 4.178 21 C 0.181 3.819 22 F -0.137 7.137 23 F -0.130 7.130 24 H 0.090 0.910 25 H 0.096 0.904 26 H 0.099 0.901 27 H 0.230 0.770 28 H 0.110 0.890 29 H 0.116 0.884 30 H 0.115 0.885 31 H 0.126 0.874 32 H 0.122 0.878 33 H 0.154 0.846 34 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -6.928 -11.277 -0.150 13.236 hybrid contribution -2.095 -0.841 -0.452 2.302 sum -9.022 -12.118 -0.602 15.120 Atomic orbital electron populations 1.21409 0.88763 1.03786 1.03871 1.23060 0.98110 0.91633 1.03734 1.18952 0.85456 0.84201 0.79815 1.90736 1.22737 1.82954 1.42721 1.42825 1.21824 1.10741 1.52624 1.17044 0.91715 0.82801 1.20202 1.20083 0.96967 0.91829 1.01997 1.20510 0.94648 0.95296 1.13361 1.17727 0.91550 0.93096 0.88582 1.20564 0.99546 0.96824 1.37394 0.90501 1.27065 0.97308 1.00433 0.93781 1.70457 1.41277 1.15016 1.14452 0.83632 0.75953 0.74572 0.76949 1.19799 1.19938 1.20115 1.20818 0.99192 0.91663 1.11472 1.20348 0.92266 0.97672 0.97977 1.24398 1.04779 0.98034 0.90557 1.19910 0.80591 0.92042 0.89355 1.93010 1.72275 1.64706 1.83679 1.93096 1.44057 1.92499 1.83318 0.90975 0.90430 0.90084 0.76987 0.88963 0.88431 0.88477 0.87406 0.87787 0.84589 0.85219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.06 9.76 37.16 0.36 -0.70 16 2 C -0.16 -2.02 2.62 -155.66 -0.41 -2.43 16 3 C 0.53 9.36 6.75 -10.99 -0.07 9.28 16 4 O -0.52 -11.23 13.91 5.55 0.08 -11.15 16 5 N -0.64 -11.20 5.25 -9.74 -0.05 -11.25 16 6 C -0.03 -0.57 6.29 -83.57 -0.53 -1.10 16 7 C -0.09 -1.91 9.89 -39.79 -0.39 -2.31 16 8 C -0.22 -5.24 9.74 -39.26 -0.38 -5.62 16 9 C 0.09 2.48 5.29 -106.80 -0.57 1.92 16 10 C -0.52 -13.65 8.97 -37.85 -0.34 -13.98 16 11 H 0.08 1.95 7.96 -52.49 -0.42 1.54 16 12 C 0.04 0.94 4.92 -17.34 -0.09 0.85 16 13 N -0.79 -21.36 12.33 55.55 0.68 -20.67 16 14 Si 1.07 21.54 30.00 -169.99 -5.10 16.44 16 15 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 16 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 17 H -0.28 -5.25 7.11 56.52 0.40 -4.85 16 18 C -0.21 -5.60 7.90 -39.26 -0.31 -5.91 16 19 C -0.06 -1.55 8.57 -39.79 -0.34 -1.90 16 20 C -0.14 -1.50 9.74 -26.68 -0.26 -1.76 16 21 C 0.22 2.82 5.14 -26.69 -0.14 2.69 16 22 F -0.16 -1.86 16.50 2.25 0.04 -1.83 16 23 F -0.15 -2.41 17.13 2.25 0.04 -2.38 16 24 H 0.07 0.59 6.32 -51.93 -0.33 0.26 16 25 H 0.08 0.58 7.10 -51.93 -0.37 0.21 16 26 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.40 5.41 7.01 -40.82 -0.29 5.12 16 28 H 0.09 1.66 8.06 -52.49 -0.42 1.24 16 29 H 0.10 2.19 8.06 -52.49 -0.42 1.77 16 30 H 0.30 8.48 6.71 -40.82 -0.27 8.21 16 31 H 0.11 2.96 6.51 -52.49 -0.34 2.62 16 32 H 0.10 2.61 6.39 -52.49 -0.34 2.27 16 33 H 0.14 1.61 7.67 -51.93 -0.40 1.21 16 34 H 0.13 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 300.10 15.07 4.52 4.52 Total: -1.00 -30.55 300.10 -6.49 -37.04 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -3.24 Total: 10.24 kcal Atomic # 6 Polarization: -17.50 SS G_CDS: -3.46 Total: -20.96 kcal Atomic # 7 Polarization: -32.56 SS G_CDS: 0.63 Total: -31.93 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: 0.08 Total: -11.15 kcal Atomic # 9 Polarization: -4.28 SS G_CDS: 0.08 Total: -4.20 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.10 Total: 16.44 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -30.55 -6.49 -37.04 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334984609.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.728 kcal (2) G-P(sol) polarization free energy of solvation -30.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds