Wall clock time and date at job start Tue Mar 31 2020 05:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50698 * 115.54947 * 2 1 4 4 O 1.21283 * 119.99824 * 145.58075 * 3 2 1 5 5 N 1.34777 * 119.99912 * 325.57855 * 3 2 1 6 6 C 1.39237 * 119.99789 * 185.12683 * 5 3 2 7 7 C 1.39488 * 119.82848 * 213.38451 * 6 5 3 8 8 C 1.36376 * 120.16656 * 180.02562 * 7 6 5 9 9 C 1.40874 * 119.82608 * 359.97438 * 8 7 6 10 10 C 1.41158 * 120.16075 * 179.97438 * 9 8 7 11 11 H 1.08000 * 119.99451 * 334.52433 * 10 9 8 12 12 C 1.39904 * 119.99772 * 154.52927 * 10 9 8 13 13 N 1.30867 * 120.00410 * 334.37795 * 12 10 9 14 14 Si 1.86806 * 119.99589 * 154.38027 * 12 10 9 15 15 H 1.48500 * 109.46974 * 179.97438 * 14 12 10 16 16 H 1.48495 * 109.47359 * 300.00070 * 14 12 10 17 17 H 1.48501 * 109.47130 * 60.00191 * 14 12 10 18 18 C 1.40861 * 119.67377 * 0.25345 * 9 8 7 19 19 C 1.36379 * 119.83086 * 359.48856 * 18 9 8 20 20 C 1.53008 * 117.49617 * 145.66638 * 2 1 3 21 21 C 1.53001 * 117.49827 * 214.32644 * 2 1 3 22 22 F 1.39896 * 117.50178 * 359.97438 * 21 2 1 23 23 F 1.39907 * 117.49626 * 145.00028 * 21 2 1 24 24 H 1.08998 * 109.47060 * 34.42274 * 1 2 3 25 25 H 1.08999 * 109.47003 * 154.41812 * 1 2 3 26 26 H 1.08996 * 109.47544 * 274.41778 * 1 2 3 27 27 H 0.97000 * 120.00078 * 5.12703 * 5 3 2 28 28 H 1.07997 * 119.91634 * 359.97438 * 7 6 5 29 29 H 1.07998 * 120.08689 * 179.97438 * 8 7 6 30 30 H 0.96999 * 120.00018 * 354.26950 * 13 12 10 31 31 H 1.08001 * 120.08887 * 179.72407 * 18 9 8 32 32 H 1.08000 * 119.91813 * 180.22956 * 19 18 9 33 33 H 1.09000 * 117.49738 * 215.00450 * 20 2 1 34 34 H 1.08997 * 117.49970 * 0.02776 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1799 1.3596 0.0000 4 8 3.2232 1.5330 0.5937 5 7 1.6019 2.3829 -0.6598 6 6 2.2538 3.6099 -0.7500 7 6 1.5113 4.7906 -0.7645 8 6 2.1426 5.9962 -0.8532 9 6 3.5484 6.0469 -0.9298 10 6 4.2091 7.2909 -1.0223 11 1 3.6958 8.1453 -1.4381 12 6 5.5289 7.4168 -0.5755 13 7 5.9878 6.6087 0.3458 14 14 6.6360 8.7387 -1.2942 15 1 7.9752 8.6630 -0.6569 16 1 6.7713 8.5292 -2.7580 17 1 6.0415 10.0753 -1.0382 18 6 4.2910 4.8500 -0.9195 19 6 3.6459 3.6522 -0.8250 20 6 2.2364 -1.1208 0.7655 21 6 2.2364 -1.1208 -0.7653 22 9 1.4340 -2.0675 -1.4111 23 9 3.4364 -0.8049 -1.4116 24 1 -0.3633 0.8477 -0.5809 25 1 -0.3633 -0.9269 -0.4437 26 1 -0.3634 0.0792 1.0245 27 1 0.7317 2.2645 -1.0718 28 1 0.4336 4.7500 -0.7061 29 1 1.5664 6.9095 -0.8647 30 1 5.3914 5.9777 0.7783 31 1 5.3687 4.8809 -0.9824 32 1 4.2141 2.7338 -0.8133 33 1 3.1713 -0.8746 1.2691 34 1 1.6112 -1.8583 1.2687 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334984609.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:07 Heat of formation + Delta-G solvation = -105.923823 kcal Electronic energy + Delta-G solvation = -21454.434019 eV Core-core repulsion = 17794.845814 eV Total energy + Delta-G solvation = -3659.588205 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.097 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.88430 -48.56292 -41.58124 -39.55447 -37.41067 -36.49603 -34.86230 -31.66950 -30.88366 -29.53205 -27.01964 -24.83991 -23.71194 -23.34953 -22.52481 -20.70750 -19.90717 -19.38853 -18.63436 -17.93286 -17.28160 -16.92421 -16.59841 -16.23014 -15.73793 -15.39271 -15.22426 -15.12112 -14.83250 -14.52303 -14.46724 -14.33238 -14.10531 -13.88405 -13.42968 -13.29075 -13.23068 -12.94629 -12.71476 -11.98733 -11.95442 -11.87850 -11.61484 -11.30116 -11.12601 -10.86644 -10.61085 -9.73882 -9.25734 -9.02495 -6.42020 0.57065 0.91434 1.15025 1.50095 1.63047 1.79524 1.84878 2.00918 2.20912 2.33007 2.66750 2.97686 3.28999 3.40320 3.49101 3.60118 4.18232 4.26659 4.27660 4.49814 4.64581 4.69230 4.72500 4.77568 4.93189 4.99267 5.12772 5.20861 5.38055 5.58570 5.71017 5.79869 5.86108 6.19131 6.30586 6.50872 6.71769 6.90269 7.17943 7.99868 Molecular weight = 281.10amu Principal moments of inertia in cm(-1) A = 0.033373 B = 0.003926 C = 0.003707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.799974 B = 7130.140693 C = 7551.689469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.158 4.158 3 C 0.527 3.473 4 O -0.563 6.563 5 N -0.631 5.631 6 C -0.007 4.007 7 C -0.082 4.082 8 C -0.224 4.224 9 C 0.065 3.935 10 C -0.551 4.551 11 H 0.081 0.919 12 C 0.000 4.000 13 N -0.818 5.818 14 Si 1.118 2.882 15 H -0.274 1.274 16 H -0.263 1.263 17 H -0.252 1.252 18 C -0.230 4.230 19 C -0.080 4.080 20 C -0.119 4.119 21 C 0.203 3.797 22 F -0.148 7.148 23 F -0.177 7.177 24 H 0.079 0.921 25 H 0.096 0.904 26 H 0.099 0.901 27 H 0.419 0.581 28 H 0.142 0.858 29 H 0.114 0.886 30 H 0.281 0.719 31 H 0.082 0.918 32 H 0.092 0.908 33 H 0.121 0.879 34 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.126 -12.863 -0.724 17.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.163 4.163 3 C 0.314 3.686 4 O -0.441 6.441 5 N -0.276 5.276 6 C -0.100 4.100 7 C -0.102 4.102 8 C -0.243 4.243 9 C 0.062 3.938 10 C -0.578 4.578 11 H 0.099 0.901 12 C -0.216 4.216 13 N -0.441 5.441 14 Si 0.935 3.065 15 H -0.199 1.199 16 H -0.188 1.188 17 H -0.176 1.176 18 C -0.251 4.251 19 C -0.100 4.100 20 C -0.156 4.156 21 C 0.166 3.834 22 F -0.128 7.128 23 F -0.157 7.157 24 H 0.098 0.902 25 H 0.115 0.885 26 H 0.118 0.882 27 H 0.258 0.742 28 H 0.159 0.841 29 H 0.132 0.868 30 H 0.093 0.907 31 H 0.101 0.899 32 H 0.110 0.890 33 H 0.139 0.861 34 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -9.855 -12.231 -0.283 15.710 hybrid contribution -1.358 -0.757 -0.416 1.610 sum -11.213 -12.989 -0.699 17.173 Atomic orbital electron populations 1.21541 0.85219 1.05191 1.05524 1.23052 1.00316 0.88386 1.04538 1.19835 0.84671 0.85819 0.78274 1.90728 1.24889 1.84054 1.44463 1.42761 1.22622 1.09328 1.52919 1.17165 0.90857 0.85126 1.16846 1.20476 0.99354 0.90379 0.99975 1.20813 0.93755 0.97151 1.12631 1.18048 0.93116 0.93095 0.89519 1.20784 1.00747 0.97136 1.39177 0.90103 1.28550 0.98731 1.01495 0.92798 1.70586 1.40763 1.16382 1.16359 0.83011 0.74064 0.72886 0.76590 1.19917 1.18795 1.17580 1.20700 0.98224 0.92798 1.13332 1.20378 0.93974 0.96540 0.99112 1.24601 1.04582 0.97554 0.88905 1.20184 0.79960 0.92690 0.90549 1.93026 1.71838 1.64211 1.83717 1.93042 1.45850 1.92818 1.84003 0.90244 0.88497 0.88200 0.74237 0.84078 0.86842 0.90706 0.89939 0.89016 0.86099 0.80669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.53 9.76 71.98 0.70 -0.82 16 2 C -0.16 -3.54 2.62 -52.93 -0.14 -3.68 16 3 C 0.53 17.91 6.75 87.66 0.59 18.50 16 4 O -0.56 -24.83 13.91 -3.04 -0.04 -24.87 16 5 N -0.63 -20.84 5.25 -303.11 -1.59 -22.43 16 6 C -0.01 -0.29 6.29 38.57 0.24 -0.05 16 7 C -0.08 -3.35 9.89 22.14 0.22 -3.13 16 8 C -0.22 -10.57 9.74 22.48 0.22 -10.35 16 9 C 0.07 3.56 5.29 -21.28 -0.11 3.45 16 10 C -0.55 -30.04 8.97 23.39 0.21 -29.83 16 11 H 0.08 4.19 7.96 -2.91 -0.02 4.16 16 12 C 0.00 0.01 4.92 85.24 0.42 0.43 16 13 N -0.82 -46.64 12.33 21.82 0.27 -46.37 16 14 Si 1.12 44.02 30.00 68.60 2.06 46.08 16 15 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 16 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 17 H -0.25 -8.89 7.11 99.48 0.71 -8.18 16 18 C -0.23 -12.86 7.90 22.48 0.18 -12.68 16 19 C -0.08 -4.10 8.57 22.13 0.19 -3.91 16 20 C -0.12 -2.23 9.74 30.62 0.30 -1.93 16 21 C 0.20 4.85 5.14 30.62 0.16 5.01 16 22 F -0.15 -3.09 16.50 44.97 0.74 -2.35 16 23 F -0.18 -5.72 17.13 44.97 0.77 -4.95 16 24 H 0.08 0.91 6.32 -2.39 -0.02 0.90 16 25 H 0.10 0.95 7.10 -2.39 -0.02 0.94 16 26 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.42 9.92 7.01 -92.71 -0.65 9.27 16 28 H 0.14 4.38 8.06 -2.91 -0.02 4.36 16 29 H 0.11 4.92 8.06 -2.91 -0.02 4.90 16 30 H 0.28 16.94 6.71 -92.71 -0.62 16.31 16 31 H 0.08 4.91 6.51 -2.91 -0.02 4.89 16 32 H 0.09 4.86 6.39 -2.91 -0.02 4.84 16 33 H 0.12 2.73 7.67 -2.39 -0.02 2.71 16 34 H 0.18 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -71.38 300.10 6.03 -65.35 By element: Atomic # 1 Polarization: 27.89 SS G_CDS: 0.65 Total: 28.54 kcal Atomic # 6 Polarization: -42.18 SS G_CDS: 3.18 Total: -39.00 kcal Atomic # 7 Polarization: -67.48 SS G_CDS: -1.32 Total: -68.80 kcal Atomic # 8 Polarization: -24.83 SS G_CDS: -0.04 Total: -24.87 kcal Atomic # 9 Polarization: -8.81 SS G_CDS: 1.51 Total: -7.29 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.06 Total: 46.08 kcal Total: -71.38 6.03 -65.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334984609.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.576 kcal (2) G-P(sol) polarization free energy of solvation -71.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds