Wall clock time and date at job start Tue Mar 31 2020 05:04:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99773 * 2 1 4 4 H 1.48496 * 109.47100 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.47000 * 300.00233 * 3 2 1 6 6 H 1.48498 * 109.47133 * 59.99847 * 3 2 1 7 7 C 1.37873 * 120.00128 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99620 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00204 * 359.97438 * 7 2 1 10 10 C 1.53040 * 109.46038 * 180.02562 * 9 7 2 11 11 C 1.53191 * 109.31421 * 178.63190 * 10 9 7 12 12 N 1.46931 * 108.77665 * 54.63218 * 11 10 9 13 13 C 1.34770 * 120.63228 * 126.36947 * 12 11 10 14 14 O 1.21582 * 120.00384 * 185.22522 * 13 12 11 15 15 N 1.34785 * 119.99872 * 5.22967 * 13 12 11 16 16 C 1.39001 * 119.99747 * 174.92596 * 15 13 12 17 17 N 1.29627 * 124.94533 * 179.97438 * 16 15 13 18 18 C 1.32016 * 116.91246 * 179.97438 * 17 16 15 19 19 C 1.33411 * 114.57097 * 359.97438 * 18 17 16 20 20 S 1.70967 * 124.94975 * 359.97438 * 16 15 13 21 21 C 1.46931 * 118.73867 * 306.64674 * 12 11 10 22 22 C 1.52763 * 109.00722 * 53.30496 * 21 12 11 23 23 H 0.96998 * 120.00380 * 359.97438 * 1 2 3 24 24 H 1.08996 * 109.46257 * 299.97705 * 9 7 2 25 25 H 1.08997 * 109.49944 * 58.67311 * 10 9 7 26 26 H 1.09006 * 109.52177 * 298.59364 * 10 9 7 27 27 H 1.08999 * 109.58598 * 294.84787 * 11 10 9 28 28 H 1.08997 * 109.70527 * 174.48674 * 11 10 9 29 29 H 0.96991 * 119.99933 * 354.91675 * 15 13 12 30 30 H 1.08001 * 122.71389 * 180.02562 * 18 17 16 31 31 H 1.07994 * 125.96996 * 179.97438 * 19 18 17 32 32 H 1.08997 * 109.58478 * 173.14590 * 21 12 11 33 33 H 1.09008 * 109.58519 * 293.57104 * 21 12 11 34 34 H 1.08994 * 109.56197 * 185.55349 * 22 21 12 35 35 H 1.09004 * 109.38176 * 65.51641 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2459 -3.6621 -0.0005 11 6 1.4770 -4.9866 0.0340 12 7 0.5227 -5.0087 -1.0831 13 6 0.5126 -6.0343 -1.9574 14 8 -0.2153 -5.9965 -2.9305 15 7 1.3095 -7.1020 -1.7529 16 6 1.2233 -8.2048 -2.5947 17 7 1.9410 -9.2789 -2.4871 18 6 1.7270 -10.2320 -3.3751 19 6 0.7836 -9.9498 -4.2753 20 16 0.1554 -8.3421 -3.9228 21 6 -0.4162 -3.8885 -1.2324 22 6 0.3703 -2.5790 -1.2495 23 1 -0.4850 0.8400 0.0004 24 1 0.6252 -2.5571 0.8899 25 1 2.8884 -3.5914 0.8771 26 1 2.8564 -3.6193 -0.9026 27 1 0.9373 -5.0713 0.9772 28 1 2.1739 -5.8188 -0.0644 29 1 1.9430 -7.1007 -1.0185 30 1 2.2710 -11.1649 -3.3726 31 1 0.4621 -10.5939 -5.0803 32 1 -0.9663 -3.9950 -2.1673 33 1 -1.1133 -3.8818 -0.3944 34 1 -0.3222 -1.7374 -1.2607 35 1 0.9980 -2.5456 -2.1401 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335492253.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:03 Heat of formation + Delta-G solvation = 26.285950 kcal Electronic energy + Delta-G solvation = -19668.957584 eV Core-core repulsion = 16601.235562 eV Total energy + Delta-G solvation = -3067.722021 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.73304 -39.34804 -37.29710 -34.93809 -33.67365 -31.27151 -30.44998 -29.31801 -26.44401 -24.88018 -23.28408 -22.47799 -21.14956 -20.78967 -19.12748 -18.02728 -17.73819 -16.45541 -16.34680 -15.88982 -15.35268 -14.65889 -14.55846 -14.31409 -13.99914 -13.42181 -13.07255 -13.00026 -12.79056 -12.47215 -12.03735 -11.48647 -11.27066 -11.02871 -10.96105 -10.71397 -10.53135 -10.16822 -10.01863 -9.70776 -9.68220 -9.32553 -9.16807 -9.03811 -8.53615 -8.41000 -8.03083 -6.08900 -4.15553 0.84408 1.21288 1.94100 2.40383 2.68839 3.23893 3.24702 3.33139 3.36232 3.75550 4.36230 4.62222 5.13488 5.21478 5.27124 5.52796 5.57559 5.63384 5.81539 5.85601 6.06042 6.24268 6.25846 6.32904 6.42843 6.53719 6.73319 6.83928 7.07130 7.25776 7.61262 7.63022 7.83087 7.87519 7.97952 8.31138 8.34776 8.87798 9.50251 10.96747 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.044710 B = 0.003669 C = 0.003551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.107824 B = 7630.179468 C = 7882.347969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.062 3.938 3 Si 0.891 3.109 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.514 4.514 8 H 0.056 0.944 9 C 0.049 3.951 10 C -0.124 4.124 11 C 0.106 3.894 12 N -0.600 5.600 13 C 0.701 3.299 14 O -0.566 6.566 15 N -0.640 5.640 16 C 0.271 3.729 17 N -0.531 5.531 18 C 0.064 3.936 19 C -0.335 4.335 20 S 0.247 5.753 21 C 0.124 3.876 22 C -0.125 4.125 23 H 0.261 0.739 24 H 0.029 0.971 25 H 0.065 0.935 26 H 0.054 0.946 27 H 0.072 0.928 28 H 0.061 0.939 29 H 0.418 0.582 30 H 0.171 0.829 31 H 0.172 0.828 32 H 0.081 0.919 33 H 0.064 0.936 34 H 0.108 0.892 35 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.463 -15.837 -3.945 16.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.139 4.139 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.552 4.552 8 H 0.074 0.926 9 C 0.030 3.970 10 C -0.163 4.163 11 C -0.016 4.016 12 N -0.335 5.335 13 C 0.402 3.598 14 O -0.444 6.444 15 N -0.294 5.294 16 C -0.097 4.097 17 N -0.255 5.255 18 C -0.088 4.088 19 C -0.476 4.476 20 S 0.495 5.505 21 C 0.003 3.997 22 C -0.164 4.164 23 H 0.071 0.929 24 H 0.047 0.953 25 H 0.083 0.917 26 H 0.073 0.927 27 H 0.090 0.910 28 H 0.079 0.921 29 H 0.259 0.741 30 H 0.188 0.812 31 H 0.189 0.811 32 H 0.100 0.900 33 H 0.082 0.918 34 H 0.126 0.874 35 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -0.608 -14.903 -4.540 15.591 hybrid contribution 1.504 0.044 0.515 1.590 sum 0.895 -14.858 -4.025 15.420 Atomic orbital electron populations 1.69835 1.05860 1.26515 1.50656 1.24960 0.94876 0.99139 0.94961 0.86550 0.80131 0.83790 0.77614 1.19843 1.21003 1.21032 1.21197 0.92950 0.90480 1.50607 0.92620 1.18643 0.92559 0.91598 0.94188 1.22034 0.99017 0.93836 1.01367 1.21902 0.91125 0.99516 0.89086 1.47505 1.37914 1.20442 1.27596 1.15760 0.80568 0.79862 0.83629 1.90823 1.44839 1.79239 1.29480 1.42148 1.41669 1.13326 1.32302 1.23296 0.98551 0.90849 0.96961 1.66328 1.28429 1.00901 1.29858 1.21252 0.98130 0.98223 0.91170 1.27448 1.07254 1.04370 1.08481 1.85102 1.35209 1.08169 1.22037 1.21883 0.90752 0.85165 1.01896 1.21989 1.00268 0.94675 0.99457 0.92917 0.95267 0.91659 0.92677 0.90957 0.92111 0.74089 0.81190 0.81096 0.90041 0.91756 0.87426 0.94123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.96 11.31 55.43 0.63 -23.34 16 2 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 3 Si 0.89 20.46 29.54 -169.99 -5.02 15.44 16 4 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 7 C -0.51 -13.20 8.56 -34.44 -0.29 -13.50 16 8 H 0.06 1.43 7.74 -52.49 -0.41 1.02 16 9 C 0.05 1.09 2.07 -91.73 -0.19 0.90 16 10 C -0.12 -2.25 5.30 -26.61 -0.14 -2.39 16 11 C 0.11 1.57 6.39 -3.71 -0.02 1.55 16 12 N -0.60 -10.01 2.98 -178.76 -0.53 -10.55 16 13 C 0.70 11.77 8.26 -86.92 -0.72 11.06 16 14 O -0.57 -10.65 13.24 5.29 0.07 -10.58 16 15 N -0.64 -9.30 5.31 -17.48 -0.09 -9.39 16 16 C 0.27 4.02 8.19 -87.35 -0.72 3.31 16 17 N -0.53 -7.57 10.59 -15.12 -0.16 -7.73 16 18 C 0.06 0.74 11.34 -19.16 -0.22 0.53 16 19 C -0.33 -3.65 11.35 29.04 0.33 -3.32 16 20 S 0.25 3.35 20.23 -107.50 -2.17 1.18 16 21 C 0.12 2.28 6.41 -3.93 -0.03 2.26 16 22 C -0.13 -2.73 5.14 -26.83 -0.14 -2.87 16 23 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 24 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 25 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 26 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 27 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.06 0.72 5.64 -51.93 -0.29 0.42 16 29 H 0.42 5.20 6.31 -40.82 -0.26 4.94 16 30 H 0.17 1.45 8.06 -52.49 -0.42 1.02 16 31 H 0.17 1.35 8.06 -52.49 -0.42 0.92 16 32 H 0.08 1.51 6.99 -51.93 -0.36 1.15 16 33 H 0.06 1.14 8.14 -51.92 -0.42 0.72 16 34 H 0.11 2.64 6.03 -51.93 -0.31 2.32 16 35 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 298.82 15.07 4.50 4.50 Total: -1.00 -28.72 298.82 -9.16 -37.88 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -4.15 Total: 3.51 kcal Atomic # 6 Polarization: 1.28 SS G_CDS: -2.23 Total: -0.94 kcal Atomic # 7 Polarization: -50.84 SS G_CDS: -0.16 Total: -51.00 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: 0.07 Total: -10.58 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Atomic # 16 Polarization: 3.35 SS G_CDS: -2.17 Total: 1.18 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -28.72 -9.16 -37.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335492253.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.168 kcal (2) G-P(sol) polarization free energy of solvation -28.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds