Wall clock time and date at job start Tue Mar 31 2020 05:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38340 * 119.90197 * 2 1 4 4 C 1.38299 * 120.39163 * 180.02562 * 3 2 1 5 5 C 1.38222 * 120.20038 * 359.97438 * 4 3 2 6 6 F 1.35097 * 120.10254 * 180.02562 * 5 4 3 7 7 C 1.39950 * 119.79635 * 0.02562 * 5 4 3 8 8 C 1.47435 * 120.19007 * 180.02562 * 7 5 4 9 9 O 1.21624 * 119.99915 * 269.96876 * 8 7 5 10 10 N 1.34776 * 120.00632 * 89.97464 * 8 7 5 11 11 C 1.36912 * 120.00439 * 179.97438 * 10 8 7 12 12 H 1.08001 * 119.99760 * 139.07226 * 11 10 8 13 13 C 1.39021 * 119.99441 * 319.07679 * 11 10 8 14 14 N 1.31385 * 119.99315 * 157.17534 * 13 11 10 15 15 Si 1.86796 * 120.00358 * 337.17153 * 13 11 10 16 16 H 1.48499 * 109.46937 * 94.74214 * 15 13 11 17 17 H 1.48495 * 109.47078 * 214.74085 * 15 13 11 18 18 H 1.48498 * 109.47128 * 334.74287 * 15 13 11 19 19 C 1.46504 * 119.99853 * 359.97438 * 10 8 7 20 20 C 1.52998 * 117.50038 * 183.23624 * 19 10 8 21 21 C 1.53001 * 117.49470 * 114.57604 * 19 10 8 22 22 C 1.38185 * 119.89942 * 180.02562 * 2 1 3 23 23 F 1.35093 * 120.09976 * 359.69964 * 22 2 1 24 24 H 1.09003 * 109.46657 * 269.98029 * 1 2 3 25 25 H 1.08994 * 109.46708 * 29.97787 * 1 2 3 26 26 H 1.08997 * 109.46738 * 149.98539 * 1 2 3 27 27 H 1.07996 * 119.80294 * 0.03345 * 3 2 1 28 28 H 1.08004 * 119.89719 * 180.02562 * 4 3 2 29 29 H 0.97004 * 119.99529 * 179.97438 * 14 13 11 30 30 H 1.09005 * 115.55014 * 328.91500 * 19 10 8 31 31 H 1.08993 * 117.49584 * 0.02562 * 20 19 10 32 32 H 1.08994 * 117.49792 * 145.02546 * 20 19 10 33 33 H 1.08999 * 117.49689 * 214.98353 * 21 19 10 34 34 H 1.08998 * 117.50041 * 359.97438 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1967 1.1992 0.0000 4 6 3.5797 1.2111 -0.0005 5 6 4.2851 0.0224 -0.0005 6 9 5.6360 0.0363 -0.0005 7 6 3.5957 -1.1955 -0.0005 8 6 4.3395 -2.4685 0.0000 9 8 4.6462 -2.9940 -1.0530 10 7 4.6795 -3.0499 1.1674 11 6 5.3697 -4.2323 1.1679 12 1 6.1712 -4.3894 1.8745 13 6 5.0388 -5.2306 0.2587 14 7 5.9250 -6.1454 -0.0638 15 14 3.3342 -5.2715 -0.5042 16 1 3.3612 -4.5720 -1.8139 17 1 2.9154 -6.6819 -0.7050 18 1 2.3709 -4.5929 0.3996 19 6 4.3105 -2.4167 2.4359 20 6 4.7904 -3.0858 3.7255 21 6 3.3131 -3.1556 3.3305 22 6 2.1959 -1.1979 -0.0005 23 9 1.5204 -2.3679 0.0051 24 1 -0.3633 -0.0004 1.0277 25 1 -0.3632 0.8902 -0.5135 26 1 -0.3633 -0.8898 -0.5141 27 1 1.6519 2.1317 0.0005 28 1 4.1100 2.1519 -0.0001 29 1 5.6940 -6.8422 -0.6978 30 1 4.2628 -1.3278 2.4215 31 1 5.3810 -3.9968 3.6300 32 1 5.0581 -2.4371 4.5595 33 1 2.6097 -2.5529 3.9048 34 1 2.9313 -4.1126 2.9750 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336359810.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:58 Heat of formation + Delta-G solvation = -51.476221 kcal Electronic energy + Delta-G solvation = -22964.980682 eV Core-core repulsion = 19307.753502 eV Total energy + Delta-G solvation = -3657.227180 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.097 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.78118 -48.73511 -39.50100 -38.29306 -36.39401 -33.01054 -32.59930 -31.56694 -30.68935 -26.74698 -25.57607 -23.46537 -22.14741 -21.78357 -21.24179 -19.51922 -18.07679 -17.48729 -17.16575 -16.34743 -15.88480 -15.50151 -15.14581 -15.05183 -14.82974 -14.26068 -14.17418 -13.75085 -13.41837 -13.37397 -13.15961 -12.98749 -12.48152 -12.12547 -11.95678 -11.66103 -11.52030 -11.41491 -11.16945 -10.75113 -10.30820 -10.11794 -10.03287 -9.66910 -8.99018 -8.61774 -8.56264 -8.49027 -7.56659 -6.27224 -3.99973 0.94820 1.01612 3.16367 3.32004 3.53481 3.61925 3.67077 3.94243 4.21388 4.46133 4.47389 4.56449 4.61451 4.79662 4.92426 5.01572 5.23485 5.41415 5.42993 5.47810 5.57857 5.66078 5.71643 5.85061 5.93887 5.96486 6.10670 6.15336 6.17544 6.25890 6.64227 6.79617 6.83049 7.76474 7.89014 8.67620 8.79253 9.35164 9.70484 10.77254 Molecular weight = 281.10amu Principal moments of inertia in cm(-1) A = 0.017749 B = 0.008569 C = 0.007986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.134462 B = 3266.882795 C = 3505.410397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.137 4.137 3 C -0.064 4.064 4 C -0.165 4.165 5 C 0.148 3.852 6 F -0.121 7.121 7 C -0.159 4.159 8 C 0.487 3.513 9 O -0.527 6.527 10 N -0.412 5.412 11 C -0.353 4.353 12 H 0.101 0.899 13 C 0.099 3.901 14 N -0.853 5.853 15 Si 0.892 3.108 16 H -0.254 1.254 17 H -0.304 1.304 18 H -0.264 1.264 19 C 0.059 3.941 20 C -0.168 4.168 21 C -0.194 4.194 22 C 0.150 3.850 23 F -0.118 7.118 24 H 0.075 0.925 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.142 0.858 28 H 0.144 0.856 29 H 0.274 0.726 30 H 0.106 0.894 31 H 0.112 0.888 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.067 14.932 4.323 18.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.138 4.138 3 C -0.082 4.082 4 C -0.184 4.184 5 C 0.128 3.872 6 F -0.099 7.099 7 C -0.164 4.164 8 C 0.275 3.725 9 O -0.409 6.409 10 N -0.131 5.131 11 C -0.479 4.479 12 H 0.119 0.881 13 C -0.112 4.112 14 N -0.486 5.486 15 Si 0.721 3.279 16 H -0.180 1.180 17 H -0.233 1.233 18 H -0.188 1.188 19 C -0.047 4.047 20 C -0.206 4.206 21 C -0.233 4.233 22 C 0.130 3.870 23 F -0.097 7.097 24 H 0.093 0.907 25 H 0.092 0.908 26 H 0.089 0.911 27 H 0.160 0.840 28 H 0.162 0.838 29 H 0.084 0.916 30 H 0.123 0.877 31 H 0.131 0.869 32 H 0.107 0.893 33 H 0.105 0.895 34 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -9.783 14.426 3.703 17.819 hybrid contribution -0.594 -0.349 -0.361 0.778 sum -10.377 14.077 3.342 17.805 Atomic orbital electron populations 1.20700 0.89597 1.03434 1.02925 1.19885 0.97396 0.91408 1.05103 1.20724 0.92843 0.97166 0.97475 1.21066 0.94750 0.96948 1.05638 1.17376 0.77421 0.92361 1.00086 1.91567 1.27955 1.97167 1.93203 1.20426 0.93109 0.96083 1.06826 1.17560 0.85292 0.84060 0.85580 1.90697 1.56261 1.63538 1.30425 1.42996 1.48447 1.20290 1.01369 1.18752 1.15610 0.90395 1.23093 0.88108 1.25275 0.97913 0.93811 0.94247 1.69765 1.33350 1.15218 1.30269 0.86714 0.83315 0.75616 0.82234 1.17999 1.23335 1.18850 1.21806 1.03779 0.94814 0.84283 1.23142 0.97337 1.03868 0.96249 1.23267 0.92542 1.03404 1.04071 1.17304 0.87941 0.81615 1.00148 1.91577 1.79426 1.45550 1.93102 0.90652 0.90818 0.91074 0.84007 0.83827 0.91612 0.87668 0.86927 0.89306 0.89485 0.88376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.10 9.83 36.01 0.35 -0.75 16 2 C -0.14 -1.83 5.88 -104.60 -0.62 -2.44 16 3 C -0.06 -0.70 9.68 -39.52 -0.38 -1.08 16 4 C -0.17 -2.07 10.01 -39.56 -0.40 -2.46 16 5 C 0.15 2.59 7.03 -38.95 -0.27 2.31 16 6 F -0.12 -2.31 16.83 2.25 0.04 -2.28 16 7 C -0.16 -3.29 4.03 -104.86 -0.42 -3.71 16 8 C 0.49 12.63 4.67 -12.52 -0.06 12.57 16 9 O -0.53 -15.92 12.62 5.26 0.07 -15.85 16 10 N -0.41 -10.48 2.51 -108.93 -0.27 -10.75 16 11 C -0.35 -10.15 8.67 -14.99 -0.13 -10.28 16 12 H 0.10 2.96 6.97 -52.49 -0.37 2.60 16 13 C 0.10 2.97 4.74 -17.45 -0.08 2.89 16 14 N -0.85 -26.42 13.96 55.50 0.77 -25.65 16 15 Si 0.89 24.80 24.63 -169.99 -4.19 20.62 16 16 H -0.25 -7.52 6.29 56.52 0.36 -7.16 16 17 H -0.30 -8.21 7.11 56.52 0.40 -7.81 16 18 H -0.26 -7.01 6.12 56.52 0.35 -6.66 16 19 C 0.06 1.19 5.88 -67.93 -0.40 0.79 16 20 C -0.17 -2.99 9.80 -26.69 -0.26 -3.26 16 21 C -0.19 -3.49 10.36 -26.69 -0.28 -3.76 16 22 C 0.15 2.75 7.23 -38.95 -0.28 2.47 16 23 F -0.12 -2.43 14.68 2.25 0.03 -2.40 16 24 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.07 0.55 8.08 -51.93 -0.42 0.13 16 26 H 0.07 0.78 7.63 -51.93 -0.40 0.38 16 27 H 0.14 0.98 8.06 -52.49 -0.42 0.55 16 28 H 0.14 1.34 8.06 -52.48 -0.42 0.92 16 29 H 0.27 8.00 8.31 -40.82 -0.34 7.66 16 30 H 0.11 1.90 7.12 -51.93 -0.37 1.53 16 31 H 0.11 2.24 6.49 -51.93 -0.34 1.90 16 32 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 34 H 0.10 1.98 8.14 -51.93 -0.42 1.56 16 LS Contribution 295.85 15.07 4.46 4.46 Total: -1.00 -35.04 295.85 -5.98 -41.02 By element: Atomic # 1 Polarization: 1.21 SS G_CDS: -3.66 Total: -2.46 kcal Atomic # 6 Polarization: -3.48 SS G_CDS: -3.23 Total: -6.71 kcal Atomic # 7 Polarization: -36.90 SS G_CDS: 0.50 Total: -36.40 kcal Atomic # 8 Polarization: -15.92 SS G_CDS: 0.07 Total: -15.85 kcal Atomic # 9 Polarization: -4.75 SS G_CDS: 0.07 Total: -4.68 kcal Atomic # 14 Polarization: 24.80 SS G_CDS: -4.19 Total: 20.62 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -35.04 -5.98 -41.02 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336359810.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.461 kcal (2) G-P(sol) polarization free energy of solvation -35.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds