Wall clock time and date at job start Tue Mar 31 2020 05:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38340 * 119.90197 * 2 1 4 4 C 1.38299 * 120.39163 * 180.02562 * 3 2 1 5 5 C 1.38222 * 120.20038 * 359.97438 * 4 3 2 6 6 F 1.35097 * 120.10254 * 180.02562 * 5 4 3 7 7 C 1.39950 * 119.79635 * 0.02562 * 5 4 3 8 8 C 1.47435 * 120.19007 * 180.02562 * 7 5 4 9 9 O 1.21624 * 119.99915 * 269.96876 * 8 7 5 10 10 N 1.34776 * 120.00632 * 89.97464 * 8 7 5 11 11 C 1.36912 * 120.00439 * 179.97438 * 10 8 7 12 12 H 1.08001 * 119.99760 * 139.07226 * 11 10 8 13 13 C 1.39021 * 119.99441 * 319.07679 * 11 10 8 14 14 N 1.31385 * 119.99315 * 157.17534 * 13 11 10 15 15 Si 1.86796 * 120.00358 * 337.17153 * 13 11 10 16 16 H 1.48499 * 109.46937 * 94.74214 * 15 13 11 17 17 H 1.48495 * 109.47078 * 214.74085 * 15 13 11 18 18 H 1.48498 * 109.47128 * 334.74287 * 15 13 11 19 19 C 1.46504 * 119.99853 * 359.97438 * 10 8 7 20 20 C 1.52998 * 117.50038 * 183.23624 * 19 10 8 21 21 C 1.53001 * 117.49470 * 114.57604 * 19 10 8 22 22 C 1.38185 * 119.89942 * 180.02562 * 2 1 3 23 23 F 1.35093 * 120.09976 * 359.69964 * 22 2 1 24 24 H 1.09003 * 109.46657 * 269.98029 * 1 2 3 25 25 H 1.08994 * 109.46708 * 29.97787 * 1 2 3 26 26 H 1.08997 * 109.46738 * 149.98539 * 1 2 3 27 27 H 1.07996 * 119.80294 * 0.03345 * 3 2 1 28 28 H 1.08004 * 119.89719 * 180.02562 * 4 3 2 29 29 H 0.97004 * 119.99529 * 179.97438 * 14 13 11 30 30 H 1.09005 * 115.55014 * 328.91500 * 19 10 8 31 31 H 1.08993 * 117.49584 * 0.02562 * 20 19 10 32 32 H 1.08994 * 117.49792 * 145.02546 * 20 19 10 33 33 H 1.08999 * 117.49689 * 214.98353 * 21 19 10 34 34 H 1.08998 * 117.50041 * 359.97438 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1967 1.1992 0.0000 4 6 3.5797 1.2111 -0.0005 5 6 4.2851 0.0224 -0.0005 6 9 5.6360 0.0363 -0.0005 7 6 3.5957 -1.1955 -0.0005 8 6 4.3395 -2.4685 0.0000 9 8 4.6462 -2.9940 -1.0530 10 7 4.6795 -3.0499 1.1674 11 6 5.3697 -4.2323 1.1679 12 1 6.1712 -4.3894 1.8745 13 6 5.0388 -5.2306 0.2587 14 7 5.9250 -6.1454 -0.0638 15 14 3.3342 -5.2715 -0.5042 16 1 3.3612 -4.5720 -1.8139 17 1 2.9154 -6.6819 -0.7050 18 1 2.3709 -4.5929 0.3996 19 6 4.3105 -2.4167 2.4359 20 6 4.7904 -3.0858 3.7255 21 6 3.3131 -3.1556 3.3305 22 6 2.1959 -1.1979 -0.0005 23 9 1.5204 -2.3679 0.0051 24 1 -0.3633 -0.0004 1.0277 25 1 -0.3632 0.8902 -0.5135 26 1 -0.3633 -0.8898 -0.5141 27 1 1.6519 2.1317 0.0005 28 1 4.1100 2.1519 -0.0001 29 1 5.6940 -6.8422 -0.6978 30 1 4.2628 -1.3278 2.4215 31 1 5.3810 -3.9968 3.6300 32 1 5.0581 -2.4371 4.5595 33 1 2.6097 -2.5529 3.9048 34 1 2.9313 -4.1126 2.9750 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336359810.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:57 Heat of formation + Delta-G solvation = -75.336970 kcal Electronic energy + Delta-G solvation = -22966.015362 eV Core-core repulsion = 19307.753502 eV Total energy + Delta-G solvation = -3658.261859 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.097 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -50.18410 -50.09563 -41.21976 -39.61445 -38.16038 -35.09038 -33.91673 -33.33001 -32.02109 -27.83438 -27.40806 -25.01847 -23.55689 -23.12769 -22.74669 -21.37662 -19.60124 -19.04053 -18.54004 -18.14019 -17.45462 -17.04578 -16.73324 -16.47073 -16.29499 -15.72385 -15.62435 -15.56863 -15.14320 -14.89282 -14.68743 -14.24885 -14.06446 -13.69930 -13.16369 -13.06251 -12.88332 -12.66438 -12.64733 -12.48907 -12.21306 -12.15113 -11.76649 -11.36287 -10.91756 -10.76204 -10.03316 -9.64313 -9.57601 -8.59642 -6.29165 -0.25056 -0.12032 1.03201 1.27346 1.35005 1.60120 2.19578 2.28412 2.42505 2.75002 2.83696 3.07836 3.32088 3.41185 3.68336 3.79741 3.91990 4.02710 4.06269 4.19912 4.43436 4.69590 4.78078 4.80214 4.81844 4.84659 4.85910 4.99235 5.11775 5.20170 5.22307 5.35965 5.54939 5.69686 5.73114 6.54448 6.69594 7.15219 7.65375 8.48742 Molecular weight = 281.10amu Principal moments of inertia in cm(-1) A = 0.017749 B = 0.008569 C = 0.007986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.134462 B = 3266.882795 C = 3505.410397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.119 4.119 3 C -0.034 4.034 4 C -0.137 4.137 5 C 0.122 3.878 6 F -0.142 7.142 7 C -0.197 4.197 8 C 0.484 3.516 9 O -0.588 6.588 10 N -0.427 5.427 11 C -0.348 4.348 12 H 0.083 0.917 13 C 0.055 3.945 14 N -0.893 5.893 15 Si 0.939 3.061 16 H -0.287 1.287 17 H -0.295 1.295 18 H -0.251 1.251 19 C 0.032 3.968 20 C -0.157 4.157 21 C -0.178 4.178 22 C 0.118 3.882 23 F -0.144 7.144 24 H 0.094 0.906 25 H 0.112 0.888 26 H 0.053 0.947 27 H 0.205 0.795 28 H 0.187 0.813 29 H 0.275 0.725 30 H 0.131 0.869 31 H 0.082 0.918 32 H 0.134 0.866 33 H 0.132 0.868 34 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.975 19.658 5.933 24.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.120 4.120 3 C -0.051 4.051 4 C -0.155 4.155 5 C 0.102 3.898 6 F -0.120 7.120 7 C -0.202 4.202 8 C 0.275 3.725 9 O -0.474 6.474 10 N -0.145 5.145 11 C -0.475 4.475 12 H 0.100 0.900 13 C -0.151 4.151 14 N -0.530 5.530 15 Si 0.768 3.232 16 H -0.215 1.215 17 H -0.223 1.223 18 H -0.174 1.174 19 C -0.072 4.072 20 C -0.194 4.194 21 C -0.216 4.216 22 C 0.098 3.902 23 F -0.122 7.122 24 H 0.112 0.888 25 H 0.130 0.870 26 H 0.072 0.928 27 H 0.221 0.779 28 H 0.204 0.796 29 H 0.085 0.915 30 H 0.149 0.851 31 H 0.101 0.899 32 H 0.152 0.848 33 H 0.150 0.850 34 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -12.713 19.158 5.372 23.612 hybrid contribution 0.297 -1.598 -0.827 1.824 sum -12.416 17.560 4.544 21.981 Atomic orbital electron populations 1.20860 0.86895 1.04550 1.04439 1.20383 0.99227 0.90100 1.02310 1.21465 0.92134 0.98336 0.93193 1.21584 0.95512 0.96271 1.02168 1.17794 0.76789 0.93085 1.02114 1.91513 1.29577 1.97266 1.93651 1.20109 0.94120 0.94255 1.11748 1.18437 0.84068 0.85411 0.84594 1.90630 1.58529 1.65773 1.32493 1.43186 1.48237 1.19452 1.03613 1.18704 1.15437 0.91469 1.21883 0.89959 1.25826 0.99952 0.94217 0.95109 1.69827 1.34540 1.16563 1.32026 0.85972 0.81545 0.75461 0.80256 1.21460 1.22321 1.17446 1.22117 1.06420 0.96069 0.82552 1.23213 0.96966 1.03028 0.96175 1.23303 0.93262 1.02149 1.02871 1.17723 0.87185 0.82588 1.02708 1.91498 1.79665 1.47389 1.93657 0.88775 0.86961 0.92763 0.77852 0.79591 0.91522 0.85110 0.89921 0.84820 0.84983 0.91319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.65 9.83 71.24 0.70 -0.95 16 2 C -0.12 -2.62 5.88 -19.85 -0.12 -2.74 16 3 C -0.03 -0.50 9.68 22.31 0.22 -0.28 16 4 C -0.14 -2.68 10.01 22.28 0.22 -2.45 16 5 C 0.12 4.06 7.03 22.68 0.16 4.22 16 6 F -0.14 -5.42 16.83 44.97 0.76 -4.66 16 7 C -0.20 -8.13 4.03 -20.02 -0.08 -8.21 16 8 C 0.48 26.16 4.67 86.67 0.40 26.57 16 9 O -0.59 -37.75 12.62 -4.11 -0.05 -37.80 16 10 N -0.43 -22.45 2.51 -616.78 -1.55 -23.99 16 11 C -0.35 -21.11 8.67 84.09 0.73 -20.38 16 12 H 0.08 5.16 6.97 -2.91 -0.02 5.14 16 13 C 0.06 3.53 4.74 84.95 0.40 3.93 16 14 N -0.89 -58.61 13.96 21.68 0.30 -58.30 16 15 Si 0.94 54.33 24.63 68.60 1.69 56.02 16 16 H -0.29 -18.04 6.29 99.48 0.63 -17.41 16 17 H -0.29 -16.19 7.11 99.48 0.71 -15.49 16 18 H -0.25 -13.67 6.12 99.48 0.61 -13.06 16 19 C 0.03 1.29 5.88 44.99 0.26 1.55 16 20 C -0.16 -5.37 9.80 30.62 0.30 -5.07 16 21 C -0.18 -6.08 10.36 30.62 0.32 -5.76 16 22 C 0.12 4.16 7.23 22.68 0.16 4.32 16 23 F -0.14 -5.94 14.68 44.97 0.66 -5.28 16 24 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 25 H 0.11 0.84 8.08 -2.39 -0.02 0.82 16 26 H 0.05 1.03 7.63 -2.39 -0.02 1.01 16 27 H 0.20 0.68 8.06 -2.91 -0.02 0.66 16 28 H 0.19 2.12 8.06 -2.91 -0.02 2.10 16 29 H 0.28 17.04 8.31 -92.71 -0.77 16.27 16 30 H 0.13 4.48 7.12 -2.38 -0.02 4.46 16 31 H 0.08 3.37 6.49 -2.39 -0.02 3.35 16 32 H 0.13 3.37 8.14 -2.39 -0.02 3.35 16 33 H 0.13 3.32 8.14 -2.39 -0.02 3.30 16 34 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 Total: -1.00 -87.37 295.85 6.45 -80.91 By element: Atomic # 1 Polarization: -2.60 SS G_CDS: 0.96 Total: -1.65 kcal Atomic # 6 Polarization: -8.94 SS G_CDS: 3.68 Total: -5.25 kcal Atomic # 7 Polarization: -81.05 SS G_CDS: -1.24 Total: -82.30 kcal Atomic # 8 Polarization: -37.75 SS G_CDS: -0.05 Total: -37.80 kcal Atomic # 9 Polarization: -11.35 SS G_CDS: 1.42 Total: -9.94 kcal Atomic # 14 Polarization: 54.33 SS G_CDS: 1.69 Total: 56.02 kcal Total: -87.37 6.45 -80.91 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336359810.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.578 kcal (2) G-P(sol) polarization free energy of solvation -87.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds