Wall clock time and date at job start Tue Mar 31 2020 05:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38422 * 119.84072 * 2 1 4 4 C 1.37901 * 120.18280 * 179.97438 * 3 2 1 5 5 C 1.39625 * 119.86152 * 0.30803 * 4 3 2 6 6 C 1.47774 * 120.15018 * 179.70055 * 5 4 3 7 7 O 1.21566 * 119.99599 * 179.97438 * 6 5 4 8 8 N 1.34769 * 120.00445 * 359.97438 * 6 5 4 9 9 C 1.46496 * 120.00427 * 179.97438 * 8 6 5 10 10 C 1.52997 * 109.47410 * 179.97438 * 9 8 6 11 11 C 1.50701 * 109.47501 * 180.02562 * 10 9 8 12 12 H 1.08002 * 119.99665 * 0.02562 * 11 10 9 13 13 C 1.37869 * 120.00515 * 180.02562 * 11 10 9 14 14 N 1.31514 * 120.00286 * 180.02562 * 13 11 10 15 15 Si 1.86804 * 119.99950 * 0.02562 * 13 11 10 16 16 H 1.48502 * 109.47002 * 90.00065 * 15 13 11 17 17 H 1.48497 * 109.47103 * 210.00310 * 15 13 11 18 18 H 1.48499 * 109.46917 * 330.00108 * 15 13 11 19 19 C 1.39689 * 119.69118 * 359.48236 * 5 4 3 20 20 Cl 1.73603 * 120.09383 * 180.23777 * 19 5 4 21 21 C 1.38154 * 119.81514 * 0.46709 * 19 5 4 22 22 C 1.50704 * 119.93746 * 179.76487 * 21 19 5 23 23 H 1.08992 * 109.47232 * 89.99777 * 1 2 3 24 24 H 1.08996 * 109.47323 * 210.00393 * 1 2 3 25 25 H 1.09003 * 109.47119 * 329.99924 * 1 2 3 26 26 H 1.08001 * 119.90875 * 0.02562 * 3 2 1 27 27 H 1.08002 * 120.06540 * 180.02562 * 4 3 2 28 28 H 0.97005 * 120.00217 * 0.02562 * 8 6 5 29 29 H 1.08998 * 109.47602 * 300.00768 * 9 8 6 30 30 H 1.09002 * 109.46587 * 60.00605 * 9 8 6 31 31 H 1.09000 * 109.47887 * 300.00833 * 10 9 8 32 32 H 1.09002 * 109.46734 * 60.00717 * 10 9 8 33 33 H 0.97006 * 120.00036 * 179.97438 * 14 13 11 34 34 H 1.08999 * 109.47321 * 270.03020 * 22 21 19 35 35 H 1.09001 * 109.47131 * 30.02239 * 22 21 19 36 36 H 1.08991 * 109.47259 * 150.02336 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.2007 0.0000 4 6 3.5748 1.2089 0.0005 5 6 4.2772 0.0022 -0.0054 6 6 5.7549 0.0036 -0.0116 7 8 6.3637 -1.0486 -0.0163 8 7 6.4278 1.1714 -0.0120 9 6 7.8927 1.1727 -0.0175 10 6 8.4014 2.6157 -0.0174 11 6 9.9084 2.6171 -0.0237 12 1 10.4493 1.6823 -0.0278 13 6 10.5967 3.8117 -0.0242 14 7 11.9118 3.8129 -0.0302 15 14 9.6613 5.4286 -0.0163 16 1 9.4199 5.8540 1.3859 17 1 10.4597 6.4658 -0.7177 18 1 8.3607 5.2514 -0.7108 19 6 3.5766 -1.2062 -0.0009 20 17 4.4394 -2.7127 -0.0021 21 6 2.1951 -1.1993 -0.0004 22 6 1.4364 -2.5014 -0.0009 23 1 -0.3633 0.0000 -1.0276 24 1 -0.3634 -0.8899 0.5139 25 1 -0.3633 0.8900 0.5139 26 1 1.6517 2.1336 0.0004 27 1 4.1103 2.1468 0.0010 28 1 5.9420 2.0110 -0.0078 29 1 8.2600 0.6575 0.8701 30 1 8.2531 0.6610 -0.9099 31 1 8.0342 3.1306 -0.9051 32 1 8.0410 3.1278 0.8748 33 1 12.3961 4.6534 -0.0309 34 1 1.2536 -2.8150 -1.0287 35 1 2.0225 -3.2636 0.5125 36 1 0.4846 -2.3676 0.5129 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342654671.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:35 Heat of formation + Delta-G solvation = -27.075231 kcal Electronic energy + Delta-G solvation = -18956.381441 eV Core-core repulsion = 15852.009048 eV Total energy + Delta-G solvation = -3104.372393 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.092 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.33631 -38.66907 -36.44313 -34.98999 -33.87076 -32.71307 -32.10603 -30.19888 -28.12418 -27.03750 -24.82476 -22.51494 -22.14776 -20.82979 -19.88625 -17.59076 -16.94623 -16.41524 -15.82667 -15.20865 -15.05521 -14.61755 -14.48475 -14.17758 -13.93008 -13.42594 -13.19610 -13.14974 -12.98682 -12.59229 -12.49097 -12.30781 -11.79346 -11.53360 -11.44142 -11.35362 -11.20367 -10.91957 -10.39782 -10.18456 -9.96090 -9.39718 -9.19551 -8.95775 -8.84619 -8.63592 -8.48238 -6.11203 -4.11379 0.59041 0.93667 2.14292 2.85111 3.24707 3.32108 3.33374 3.49038 3.69063 4.37035 4.37275 4.41776 4.66957 4.72727 4.84854 5.07679 5.14959 5.21627 5.24969 5.33201 5.40719 5.44323 5.58461 5.83839 5.87897 5.96142 6.13026 6.17398 6.21073 6.47574 6.55810 6.73205 7.12972 7.22574 7.66088 7.86970 8.43165 8.54194 8.93354 9.48791 11.01878 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.027106 B = 0.003760 C = 0.003314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.736658 B = 7444.844353 C = 8446.521294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.058 4.058 3 C -0.122 4.122 4 C -0.078 4.078 5 C -0.124 4.124 6 C 0.543 3.457 7 O -0.520 6.520 8 N -0.720 5.720 9 C 0.131 3.869 10 C -0.022 4.022 11 C -0.523 4.523 12 H 0.076 0.924 13 C 0.069 3.931 14 N -0.898 5.898 15 Si 0.882 3.118 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.266 1.266 19 C 0.014 3.986 20 Cl -0.029 7.029 21 C -0.091 4.091 22 C -0.121 4.121 23 H 0.076 0.924 24 H 0.074 0.926 25 H 0.070 0.930 26 H 0.133 0.867 27 H 0.136 0.864 28 H 0.393 0.607 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.022 0.978 32 H 0.017 0.983 33 H 0.265 0.735 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.451 -6.986 0.045 27.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.059 4.059 3 C -0.140 4.140 4 C -0.097 4.097 5 C -0.128 4.128 6 C 0.329 3.671 7 O -0.397 6.397 8 N -0.371 5.371 9 C 0.009 3.991 10 C -0.060 4.060 11 C -0.561 4.561 12 H 0.094 0.906 13 C -0.133 4.133 14 N -0.537 5.537 15 Si 0.709 3.291 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.191 1.191 19 C -0.014 4.014 20 Cl 0.001 6.999 21 C -0.092 4.092 22 C -0.177 4.177 23 H 0.094 0.906 24 H 0.093 0.907 25 H 0.089 0.911 26 H 0.151 0.849 27 H 0.154 0.846 28 H 0.228 0.772 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.040 0.960 32 H 0.036 0.964 33 H 0.075 0.925 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -25.712 -7.771 0.039 26.861 hybrid contribution -0.376 1.406 0.007 1.455 sum -26.088 -6.365 0.046 26.853 Atomic orbital electron populations 1.20922 0.90406 1.03359 1.02849 1.19865 0.96419 0.91886 0.97715 1.21038 0.93820 0.97902 1.01273 1.21317 0.94416 0.96878 0.97114 1.19951 0.94471 0.92630 1.05795 1.18077 0.86332 0.84682 0.78027 1.90853 1.69434 1.30557 1.48881 1.46249 1.09255 1.07527 1.74114 1.21533 0.75536 1.00174 1.01817 1.19800 0.98060 0.91327 0.96812 1.20915 0.88622 0.94926 1.51635 0.90575 1.24999 0.94764 0.99138 0.94380 1.69905 1.06324 1.27022 1.50419 0.86754 0.80278 0.83563 0.78498 1.20207 1.21252 1.19095 1.20883 0.91508 0.87982 1.01008 1.98405 1.76345 1.29213 1.95957 1.19563 0.91201 0.96310 1.02117 1.20934 1.00058 0.93653 1.03060 0.90565 0.90722 0.91082 0.84875 0.84620 0.77219 0.91756 0.91739 0.95995 0.96434 0.92541 0.90545 0.90712 0.90657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.67 9.59 36.01 0.35 -0.32 16 2 C -0.06 -0.52 5.88 -104.54 -0.62 -1.13 16 3 C -0.12 -1.10 9.68 -39.64 -0.38 -1.48 16 4 C -0.08 -0.86 9.54 -39.19 -0.37 -1.23 16 5 C -0.12 -1.77 5.88 -104.94 -0.62 -2.38 16 6 C 0.54 9.50 7.77 -12.37 -0.10 9.40 16 7 O -0.52 -10.72 13.97 5.31 0.07 -10.65 16 8 N -0.72 -12.25 5.51 -61.28 -0.34 -12.59 16 9 C 0.13 2.71 5.61 -4.05 -0.02 2.69 16 10 C -0.02 -0.51 4.16 -27.88 -0.12 -0.63 16 11 C -0.52 -14.68 9.66 -34.44 -0.33 -15.01 16 12 H 0.08 2.32 7.99 -52.49 -0.42 1.90 16 13 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 14 N -0.90 -27.42 13.96 55.43 0.77 -26.64 16 15 Si 0.88 20.99 27.47 -169.99 -4.67 16.32 16 16 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 17 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 18 H -0.27 -5.96 6.54 56.52 0.37 -5.59 16 19 C 0.01 0.19 6.35 -39.07 -0.25 -0.05 16 20 Cl -0.03 -0.42 24.36 -51.86 -1.26 -1.69 16 21 C -0.09 -0.96 5.88 -104.64 -0.62 -1.58 16 22 C -0.12 -0.96 9.20 36.01 0.33 -0.63 16 23 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 24 H 0.07 0.36 5.93 -51.93 -0.31 0.05 16 25 H 0.07 0.32 8.08 -51.93 -0.42 -0.10 16 26 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 27 H 0.14 1.24 6.41 -52.49 -0.34 0.90 16 28 H 0.39 5.53 6.51 -40.82 -0.27 5.26 16 29 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 30 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 31 H 0.02 0.49 7.20 -51.93 -0.37 0.12 16 32 H 0.02 0.39 7.57 -51.93 -0.39 -0.01 16 33 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 34 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.64 6.90 -51.93 -0.36 0.28 16 36 H 0.07 0.44 5.93 -51.93 -0.31 0.13 16 LS Contribution 312.11 15.07 4.70 4.70 Total: -1.00 -32.89 312.11 -8.02 -40.91 By element: Atomic # 1 Polarization: 4.59 SS G_CDS: -4.46 Total: 0.13 kcal Atomic # 6 Polarization: -7.65 SS G_CDS: -2.84 Total: -10.49 kcal Atomic # 7 Polarization: -39.67 SS G_CDS: 0.44 Total: -39.23 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: 0.07 Total: -10.65 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -4.67 Total: 16.32 kcal Atomic # 17 Polarization: -0.42 SS G_CDS: -1.26 Total: -1.69 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -32.89 -8.02 -40.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342654671.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.832 kcal (2) G-P(sol) polarization free energy of solvation -32.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds