Wall clock time and date at job start Tue Mar 31 2020 05:07:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38422 * 119.84072 * 2 1 4 4 C 1.37901 * 120.18280 * 179.97438 * 3 2 1 5 5 C 1.39625 * 119.86152 * 0.30803 * 4 3 2 6 6 C 1.47774 * 120.15018 * 179.70055 * 5 4 3 7 7 O 1.21566 * 119.99599 * 179.97438 * 6 5 4 8 8 N 1.34769 * 120.00445 * 359.97438 * 6 5 4 9 9 C 1.46496 * 120.00427 * 179.97438 * 8 6 5 10 10 C 1.52997 * 109.47410 * 179.97438 * 9 8 6 11 11 C 1.50701 * 109.47501 * 180.02562 * 10 9 8 12 12 H 1.08002 * 119.99665 * 0.02562 * 11 10 9 13 13 C 1.37869 * 120.00515 * 180.02562 * 11 10 9 14 14 N 1.31514 * 120.00286 * 180.02562 * 13 11 10 15 15 Si 1.86804 * 119.99950 * 0.02562 * 13 11 10 16 16 H 1.48502 * 109.47002 * 90.00065 * 15 13 11 17 17 H 1.48497 * 109.47103 * 210.00310 * 15 13 11 18 18 H 1.48499 * 109.46917 * 330.00108 * 15 13 11 19 19 C 1.39689 * 119.69118 * 359.48236 * 5 4 3 20 20 Cl 1.73603 * 120.09383 * 180.23777 * 19 5 4 21 21 C 1.38154 * 119.81514 * 0.46709 * 19 5 4 22 22 C 1.50704 * 119.93746 * 179.76487 * 21 19 5 23 23 H 1.08992 * 109.47232 * 89.99777 * 1 2 3 24 24 H 1.08996 * 109.47323 * 210.00393 * 1 2 3 25 25 H 1.09003 * 109.47119 * 329.99924 * 1 2 3 26 26 H 1.08001 * 119.90875 * 0.02562 * 3 2 1 27 27 H 1.08002 * 120.06540 * 180.02562 * 4 3 2 28 28 H 0.97005 * 120.00217 * 0.02562 * 8 6 5 29 29 H 1.08998 * 109.47602 * 300.00768 * 9 8 6 30 30 H 1.09002 * 109.46587 * 60.00605 * 9 8 6 31 31 H 1.09000 * 109.47887 * 300.00833 * 10 9 8 32 32 H 1.09002 * 109.46734 * 60.00717 * 10 9 8 33 33 H 0.97006 * 120.00036 * 179.97438 * 14 13 11 34 34 H 1.08999 * 109.47321 * 270.03020 * 22 21 19 35 35 H 1.09001 * 109.47131 * 30.02239 * 22 21 19 36 36 H 1.08991 * 109.47259 * 150.02336 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.2007 0.0000 4 6 3.5748 1.2089 0.0005 5 6 4.2772 0.0022 -0.0054 6 6 5.7549 0.0036 -0.0116 7 8 6.3637 -1.0486 -0.0163 8 7 6.4278 1.1714 -0.0120 9 6 7.8927 1.1727 -0.0175 10 6 8.4014 2.6157 -0.0174 11 6 9.9084 2.6171 -0.0237 12 1 10.4493 1.6823 -0.0278 13 6 10.5967 3.8117 -0.0242 14 7 11.9118 3.8129 -0.0302 15 14 9.6613 5.4286 -0.0163 16 1 9.4199 5.8540 1.3859 17 1 10.4597 6.4658 -0.7177 18 1 8.3607 5.2514 -0.7108 19 6 3.5766 -1.2062 -0.0009 20 17 4.4394 -2.7127 -0.0021 21 6 2.1951 -1.1993 -0.0004 22 6 1.4364 -2.5014 -0.0009 23 1 -0.3633 0.0000 -1.0276 24 1 -0.3634 -0.8899 0.5139 25 1 -0.3633 0.8900 0.5139 26 1 1.6517 2.1336 0.0004 27 1 4.1103 2.1468 0.0010 28 1 5.9420 2.0110 -0.0078 29 1 8.2600 0.6575 0.8701 30 1 8.2531 0.6610 -0.9099 31 1 8.0342 3.1306 -0.9051 32 1 8.0410 3.1278 0.8748 33 1 12.3961 4.6534 -0.0309 34 1 1.2536 -2.8150 -1.0287 35 1 2.0225 -3.2636 0.5125 36 1 0.4846 -2.3676 0.5129 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342654671.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:34 Heat of formation + Delta-G solvation = -48.387466 kcal Electronic energy + Delta-G solvation = -18957.305609 eV Core-core repulsion = 15852.009048 eV Total energy + Delta-G solvation = -3105.296561 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.092 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.36655 -39.82507 -37.45241 -36.64030 -34.99816 -34.43911 -32.85077 -31.98396 -28.87463 -28.00393 -26.44377 -23.60049 -22.99206 -22.60785 -21.08810 -18.99206 -18.73081 -17.43883 -16.73738 -16.58471 -16.35059 -16.10657 -15.56613 -15.51557 -14.88719 -14.83358 -14.66076 -14.14272 -13.77868 -13.59347 -13.35399 -13.28553 -13.07431 -12.98653 -12.60835 -12.23707 -12.22566 -12.16393 -12.06389 -11.84387 -11.76047 -11.51458 -10.79263 -10.57707 -10.14219 -9.69368 -9.65498 -8.30381 -6.38174 -0.32386 0.14098 1.17955 1.38980 1.42200 1.53390 1.78884 2.16076 2.37000 2.66245 3.04612 3.57951 3.63534 3.86742 4.07405 4.08943 4.30346 4.36730 4.40857 4.56697 4.68570 4.70910 4.72953 4.82762 4.92546 5.06145 5.11796 5.13194 5.20745 5.31430 5.38475 5.40071 5.48812 5.62587 5.79035 6.21329 6.54758 6.70052 7.20938 7.26575 8.86580 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.027106 B = 0.003760 C = 0.003314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.736658 B = 7444.844353 C = 8446.521294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.048 4.048 3 C -0.116 4.116 4 C -0.076 4.076 5 C -0.154 4.154 6 C 0.540 3.460 7 O -0.562 6.562 8 N -0.711 5.711 9 C 0.147 3.853 10 C -0.012 4.012 11 C -0.541 4.541 12 H 0.027 0.973 13 C 0.003 3.997 14 N -0.952 5.952 15 Si 0.960 3.040 16 H -0.264 1.264 17 H -0.286 1.286 18 H -0.235 1.235 19 C -0.007 4.007 20 Cl -0.055 7.055 21 C -0.097 4.097 22 C -0.121 4.121 23 H 0.090 0.910 24 H 0.084 0.916 25 H 0.089 0.911 26 H 0.170 0.830 27 H 0.155 0.845 28 H 0.411 0.589 29 H 0.044 0.956 30 H 0.044 0.956 31 H 0.038 0.962 32 H 0.037 0.963 33 H 0.268 0.732 34 H 0.084 0.916 35 H 0.062 0.938 36 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.096 -4.521 0.050 31.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.049 4.049 3 C -0.134 4.134 4 C -0.095 4.095 5 C -0.158 4.158 6 C 0.328 3.672 7 O -0.442 6.442 8 N -0.363 5.363 9 C 0.023 3.977 10 C -0.049 4.049 11 C -0.579 4.579 12 H 0.046 0.954 13 C -0.194 4.194 14 N -0.592 5.592 15 Si 0.782 3.218 16 H -0.189 1.189 17 H -0.212 1.212 18 H -0.158 1.158 19 C -0.035 4.035 20 Cl -0.026 7.026 21 C -0.098 4.098 22 C -0.177 4.177 23 H 0.108 0.892 24 H 0.103 0.897 25 H 0.107 0.893 26 H 0.188 0.812 27 H 0.172 0.828 28 H 0.249 0.751 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.077 0.923 34 H 0.103 0.897 35 H 0.081 0.919 36 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -30.404 -5.307 0.044 30.863 hybrid contribution 1.019 0.564 0.006 1.164 sum -29.385 -4.743 0.050 29.765 Atomic orbital electron populations 1.21044 0.87513 1.04842 1.04105 1.20368 0.98399 0.91076 0.95017 1.21484 0.92995 0.99492 0.99390 1.21572 0.95538 0.96154 0.96252 1.19761 0.92092 0.94409 1.09511 1.18668 0.87995 0.83857 0.76651 1.90826 1.70711 1.31961 1.50706 1.45948 1.07486 1.08621 1.74253 1.21041 0.77982 0.98638 1.00004 1.19649 0.94437 0.92685 0.98171 1.21250 0.91590 0.93385 1.51684 0.95450 1.26110 0.95717 1.03972 0.93586 1.70083 1.08690 1.28449 1.51936 0.85521 0.79733 0.77130 0.79396 1.18880 1.21228 1.15760 1.21159 0.92712 0.86853 1.02808 1.98387 1.77167 1.30817 1.96228 1.19905 0.90060 0.98282 1.01579 1.21005 1.00688 0.92171 1.03814 0.89173 0.89694 0.89254 0.81217 0.82789 0.75141 0.93757 0.93769 0.94333 0.94472 0.92298 0.89715 0.91854 0.88042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.73 9.59 71.24 0.68 -0.05 16 2 C -0.05 -0.67 5.88 -19.81 -0.12 -0.78 16 3 C -0.12 -1.57 9.68 22.23 0.22 -1.36 16 4 C -0.08 -1.45 9.54 22.52 0.21 -1.24 16 5 C -0.15 -4.25 5.88 -20.07 -0.12 -4.37 16 6 C 0.54 19.16 7.77 86.77 0.67 19.83 16 7 O -0.56 -24.33 13.97 -3.92 -0.05 -24.38 16 8 N -0.71 -23.80 5.51 -466.06 -2.57 -26.36 16 9 C 0.15 6.21 5.61 86.38 0.48 6.70 16 10 C -0.01 -0.53 4.16 29.85 0.12 -0.40 16 11 C -0.54 -31.25 9.66 25.60 0.25 -31.01 16 12 H 0.03 1.78 7.99 -2.91 -0.02 1.76 16 13 C 0.00 0.18 5.47 84.65 0.46 0.64 16 14 N -0.95 -59.82 13.96 21.44 0.30 -59.52 16 15 Si 0.96 42.17 27.47 68.60 1.88 44.06 16 16 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 17 H -0.29 -12.51 7.11 99.48 0.71 -11.80 16 18 H -0.23 -9.06 6.54 99.48 0.65 -8.41 16 19 C -0.01 -0.20 6.35 22.60 0.14 -0.06 16 20 Cl -0.06 -1.70 24.36 -2.72 -0.07 -1.76 16 21 C -0.10 -1.85 5.88 -19.88 -0.12 -1.97 16 22 C -0.12 -1.67 9.20 71.24 0.66 -1.01 16 23 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 24 H 0.08 0.39 5.93 -2.39 -0.01 0.37 16 25 H 0.09 0.29 8.08 -2.39 -0.02 0.27 16 26 H 0.17 1.09 8.06 -2.91 -0.02 1.06 16 27 H 0.15 2.23 6.41 -2.91 -0.02 2.21 16 28 H 0.41 10.60 6.51 -92.70 -0.60 10.00 16 29 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.04 1.62 7.20 -2.39 -0.02 1.60 16 32 H 0.04 1.54 7.57 -2.39 -0.02 1.52 16 33 H 0.27 15.61 8.31 -92.70 -0.77 14.84 16 34 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.06 1.03 6.90 -2.39 -0.02 1.02 16 36 H 0.10 0.83 5.93 -2.39 -0.01 0.82 16 Total: -1.00 -76.21 312.11 3.50 -72.71 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: 0.45 Total: 10.32 kcal Atomic # 6 Polarization: -18.62 SS G_CDS: 3.55 Total: -15.06 kcal Atomic # 7 Polarization: -83.62 SS G_CDS: -2.27 Total: -85.88 kcal Atomic # 8 Polarization: -24.33 SS G_CDS: -0.05 Total: -24.38 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 1.88 Total: 44.06 kcal Atomic # 17 Polarization: -1.70 SS G_CDS: -0.07 Total: -1.76 kcal Total: -76.21 3.50 -72.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342654671.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.324 kcal (2) G-P(sol) polarization free energy of solvation -76.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds