Wall clock time and date at job start Tue Mar 31 2020 05:04:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99506 * 2 1 4 4 H 1.48493 * 109.47192 * 269.99782 * 3 2 1 5 5 H 1.48501 * 109.47183 * 30.00005 * 3 2 1 6 6 H 1.48502 * 109.47107 * 149.99756 * 3 2 1 7 7 C 1.37873 * 120.00408 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99547 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99981 * 180.02562 * 7 2 1 10 10 C 1.53001 * 109.47091 * 179.97438 * 9 7 2 11 11 N 1.46497 * 109.47066 * 179.97438 * 10 9 7 12 12 C 1.34779 * 119.99665 * 180.02562 * 11 10 9 13 13 O 1.21599 * 120.00375 * 359.97438 * 12 11 10 14 14 N 1.34782 * 119.99830 * 180.02562 * 12 11 10 15 15 C 1.39859 * 120.00171 * 179.97438 * 14 12 11 16 16 S 1.76199 * 126.06698 * 0.02562 * 15 14 12 17 17 C 1.70950 * 90.32930 * 179.97438 * 16 15 14 18 18 N 1.28910 * 110.31543 * 0.02562 * 17 16 15 19 19 C 1.31890 * 117.18765 * 359.97438 * 18 17 16 20 20 C 1.50702 * 122.84572 * 180.02562 * 19 18 17 21 21 C 1.52998 * 117.50065 * 8.62224 * 20 19 18 22 22 C 1.52993 * 59.99967 * 252.50870 * 21 20 19 23 23 H 0.96999 * 120.00291 * 0.02562 * 1 2 3 24 24 H 1.08995 * 109.47632 * 59.99956 * 9 7 2 25 25 H 1.09001 * 109.47133 * 300.00010 * 9 7 2 26 26 H 1.09004 * 109.46646 * 59.99866 * 10 9 7 27 27 H 1.09001 * 109.47259 * 300.00078 * 10 9 7 28 28 H 0.96993 * 120.00082 * 0.02562 * 11 10 9 29 29 H 0.97003 * 119.99847 * 359.97438 * 14 12 11 30 30 H 1.08006 * 124.84270 * 179.97438 * 17 16 15 31 31 H 1.08998 * 115.54767 * 154.32796 * 20 19 18 32 32 H 1.09000 * 117.50084 * 0.02562 * 21 20 19 33 33 H 1.09002 * 117.49852 * 145.01664 * 21 20 19 34 34 H 1.09004 * 117.50383 * 252.50956 * 22 21 20 35 35 H 1.09003 * 117.51950 * 107.47601 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4404 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1939 0.0011 10 6 4.0217 -2.6363 0.0023 11 7 5.4866 -2.6362 0.0022 12 6 6.1606 -3.8034 0.0026 13 8 5.5527 -4.8566 0.0035 14 7 7.5084 -3.8034 0.0031 15 6 8.2078 -5.0145 0.0041 16 16 7.4931 -6.6251 0.0042 17 6 9.0517 -7.3274 0.0048 18 7 9.9564 -6.4091 0.0055 19 6 9.5436 -5.1565 0.0050 20 6 10.4903 -3.9839 0.0051 21 6 11.9781 -4.2771 -0.1977 22 6 11.4615 -3.8602 1.1807 23 1 -0.4850 0.8400 -0.0004 24 1 3.8746 -0.6798 0.8911 25 1 3.8752 -0.6802 -0.8888 26 1 3.6586 -3.1507 -0.8875 27 1 3.6580 -3.1496 0.8925 28 1 5.9716 -1.7962 0.0019 29 1 7.9933 -2.9633 0.0028 30 1 9.2501 -8.3891 0.0055 31 1 10.0961 -3.0615 -0.4213 32 1 12.2723 -5.3181 -0.3316 33 1 12.5631 -3.5475 -0.7578 34 1 11.7066 -2.8563 1.5277 35 1 11.4155 -4.6267 1.9544 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345106949.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:45 Heat of formation + Delta-G solvation = 38.159808 kcal Electronic energy + Delta-G solvation = -18764.985853 eV Core-core repulsion = 15697.778721 eV Total energy + Delta-G solvation = -3067.207132 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.62797 -39.70016 -36.60692 -35.58639 -34.84509 -32.91677 -30.52972 -29.02901 -25.62741 -24.53968 -23.17806 -22.51277 -21.50302 -20.96649 -19.68852 -18.71110 -17.77153 -16.95041 -16.70248 -15.88748 -15.60654 -14.95493 -14.64172 -14.36323 -14.24804 -14.09614 -13.84089 -13.59312 -12.68387 -12.46392 -11.69465 -11.61169 -11.51619 -11.50194 -11.20887 -10.91631 -10.67598 -10.53228 -10.49909 -10.16340 -9.99408 -9.46398 -9.39960 -9.07708 -8.77745 -8.67089 -8.02324 -6.17490 -4.18502 0.73536 1.11421 1.81806 2.54574 2.56590 3.14976 3.19901 3.27289 3.28704 3.77379 4.17356 4.20283 4.31314 4.51903 4.66024 4.85459 5.10603 5.15154 5.26431 5.45429 5.59014 5.76797 5.85427 5.90258 6.01914 6.08291 6.21528 6.43504 6.48906 6.61996 7.04963 7.12172 7.57588 7.71823 7.83105 8.34919 8.40685 8.86388 9.41956 10.95407 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.027375 B = 0.003415 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.572254 B = 8197.475941 C = 9131.454532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.070 3.930 3 Si 0.882 3.118 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.267 1.267 7 C -0.525 4.525 8 H 0.077 0.923 9 C -0.021 4.021 10 C 0.146 3.854 11 N -0.727 5.727 12 C 0.691 3.309 13 O -0.562 6.562 14 N -0.645 5.645 15 C 0.038 3.962 16 S 0.249 5.751 17 C -0.058 4.058 18 N -0.445 5.445 19 C 0.022 3.978 20 C -0.085 4.085 21 C -0.158 4.158 22 C -0.166 4.166 23 H 0.266 0.734 24 H 0.023 0.977 25 H 0.018 0.982 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.397 0.603 29 H 0.413 0.587 30 H 0.195 0.805 31 H 0.111 0.889 32 H 0.105 0.895 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.348 -8.317 0.325 23.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.132 4.132 3 Si 0.709 3.291 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.191 1.191 7 C -0.563 4.563 8 H 0.095 0.905 9 C -0.059 4.059 10 C 0.024 3.976 11 N -0.380 5.380 12 C 0.390 3.610 13 O -0.440 6.440 14 N -0.293 5.293 15 C -0.183 4.183 16 S 0.498 5.502 17 C -0.356 4.356 18 N -0.158 5.158 19 C -0.114 4.114 20 C -0.106 4.106 21 C -0.196 4.196 22 C -0.204 4.204 23 H 0.076 0.924 24 H 0.041 0.959 25 H 0.037 0.963 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.230 0.770 29 H 0.251 0.749 30 H 0.211 0.789 31 H 0.129 0.871 32 H 0.124 0.876 33 H 0.112 0.888 34 H 0.115 0.885 35 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 21.024 -9.680 0.327 23.148 hybrid contribution 1.352 2.492 -0.042 2.836 sum 22.376 -7.188 0.285 23.504 Atomic orbital electron populations 1.69895 1.06295 1.27157 1.50102 1.24993 0.94766 0.99148 0.94291 0.86753 0.80226 0.83564 0.78518 1.20194 1.21196 1.19139 1.20873 0.88436 0.94992 1.52021 0.90505 1.19806 0.98120 0.91046 0.96958 1.21549 0.73601 1.00453 1.02034 1.45493 1.09387 1.05699 1.77375 1.16077 0.80480 0.85738 0.78689 1.90876 1.66013 1.29913 1.57171 1.42031 1.05385 1.06127 1.75774 1.23234 0.93843 0.92209 1.08982 1.85121 1.05474 0.92405 1.67164 1.28379 0.94877 1.03705 1.08657 1.66000 1.36976 0.98733 1.14124 1.18975 0.88850 0.92129 1.11428 1.20258 0.90214 0.95048 1.05037 1.22907 0.94297 1.03290 0.99073 1.22978 1.02745 1.02697 0.91960 0.92449 0.95908 0.96339 0.91601 0.91571 0.76995 0.74948 0.78869 0.87084 0.87633 0.88778 0.88532 0.88664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.75 13.96 55.43 0.77 -25.97 16 2 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 3 Si 0.88 20.44 27.47 -169.99 -4.67 15.77 16 4 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.27 -5.80 6.54 56.52 0.37 -5.43 16 7 C -0.52 -14.22 9.66 -34.44 -0.33 -14.56 16 8 H 0.08 2.26 7.99 -52.48 -0.42 1.84 16 9 C -0.02 -0.46 4.16 -27.88 -0.12 -0.58 16 10 C 0.15 2.78 5.61 -4.04 -0.02 2.75 16 11 N -0.73 -10.96 5.56 -65.22 -0.36 -11.32 16 12 C 0.69 10.70 8.53 -86.91 -0.74 9.96 16 13 O -0.56 -10.49 13.97 5.28 0.07 -10.41 16 14 N -0.64 -7.88 5.42 -14.96 -0.08 -7.96 16 15 C 0.04 0.49 7.18 -15.26 -0.11 0.38 16 16 S 0.25 3.14 20.46 -107.50 -2.20 0.94 16 17 C -0.06 -0.63 12.21 51.54 0.63 0.00 16 18 N -0.44 -5.56 9.83 -11.75 -0.12 -5.68 16 19 C 0.02 0.27 6.39 -83.94 -0.54 -0.27 16 20 C -0.08 -0.82 5.82 -91.77 -0.53 -1.36 16 21 C -0.16 -1.39 10.09 -26.74 -0.27 -1.66 16 22 C -0.17 -1.43 10.23 -26.74 -0.27 -1.71 16 23 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 24 H 0.02 0.48 7.20 -51.93 -0.37 0.11 16 25 H 0.02 0.39 7.57 -51.93 -0.39 -0.01 16 26 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 27 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 28 H 0.40 4.76 8.49 -40.82 -0.35 4.42 16 29 H 0.41 3.68 7.73 -40.82 -0.32 3.37 16 30 H 0.19 1.44 8.06 -52.48 -0.42 1.02 16 31 H 0.11 0.88 7.39 -51.93 -0.38 0.50 16 32 H 0.11 1.05 7.73 -51.93 -0.40 0.65 16 33 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 313.96 15.07 4.73 4.73 Total: -1.00 -32.29 313.96 -8.59 -40.88 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -4.34 Total: 4.19 kcal Atomic # 6 Polarization: -2.77 SS G_CDS: -2.40 Total: -5.17 kcal Atomic # 7 Polarization: -51.14 SS G_CDS: 0.21 Total: -50.93 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: 0.07 Total: -10.41 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -4.67 Total: 15.77 kcal Atomic # 16 Polarization: 3.14 SS G_CDS: -2.20 Total: 0.94 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -32.29 -8.59 -40.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345106949.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.037 kcal (2) G-P(sol) polarization free energy of solvation -32.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds