Wall clock time and date at job start Tue Mar 31 2020 05:04:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99506 * 2 1 4 4 H 1.48493 * 109.47192 * 269.99782 * 3 2 1 5 5 H 1.48501 * 109.47183 * 30.00005 * 3 2 1 6 6 H 1.48502 * 109.47107 * 149.99756 * 3 2 1 7 7 C 1.37873 * 120.00408 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99547 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99981 * 180.02562 * 7 2 1 10 10 C 1.53001 * 109.47091 * 179.97438 * 9 7 2 11 11 N 1.46497 * 109.47066 * 179.97438 * 10 9 7 12 12 C 1.34779 * 119.99665 * 180.02562 * 11 10 9 13 13 O 1.21599 * 120.00375 * 359.97438 * 12 11 10 14 14 N 1.34782 * 119.99830 * 180.02562 * 12 11 10 15 15 C 1.39859 * 120.00171 * 179.97438 * 14 12 11 16 16 S 1.76199 * 126.06698 * 0.02562 * 15 14 12 17 17 C 1.70950 * 90.32930 * 179.97438 * 16 15 14 18 18 N 1.28910 * 110.31543 * 0.02562 * 17 16 15 19 19 C 1.31890 * 117.18765 * 359.97438 * 18 17 16 20 20 C 1.50702 * 122.84572 * 180.02562 * 19 18 17 21 21 C 1.52998 * 117.50065 * 8.62224 * 20 19 18 22 22 C 1.52993 * 59.99967 * 252.50870 * 21 20 19 23 23 H 0.96999 * 120.00291 * 0.02562 * 1 2 3 24 24 H 1.08995 * 109.47632 * 59.99956 * 9 7 2 25 25 H 1.09001 * 109.47133 * 300.00010 * 9 7 2 26 26 H 1.09004 * 109.46646 * 59.99866 * 10 9 7 27 27 H 1.09001 * 109.47259 * 300.00078 * 10 9 7 28 28 H 0.96993 * 120.00082 * 0.02562 * 11 10 9 29 29 H 0.97003 * 119.99847 * 359.97438 * 14 12 11 30 30 H 1.08006 * 124.84270 * 179.97438 * 17 16 15 31 31 H 1.08998 * 115.54767 * 154.32796 * 20 19 18 32 32 H 1.09000 * 117.50084 * 0.02562 * 21 20 19 33 33 H 1.09002 * 117.49852 * 145.01664 * 21 20 19 34 34 H 1.09004 * 117.50383 * 252.50956 * 22 21 20 35 35 H 1.09003 * 117.51950 * 107.47601 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4404 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1939 0.0011 10 6 4.0217 -2.6363 0.0023 11 7 5.4866 -2.6362 0.0022 12 6 6.1606 -3.8034 0.0026 13 8 5.5527 -4.8566 0.0035 14 7 7.5084 -3.8034 0.0031 15 6 8.2078 -5.0145 0.0041 16 16 7.4931 -6.6251 0.0042 17 6 9.0517 -7.3274 0.0048 18 7 9.9564 -6.4091 0.0055 19 6 9.5436 -5.1565 0.0050 20 6 10.4903 -3.9839 0.0051 21 6 11.9781 -4.2771 -0.1977 22 6 11.4615 -3.8602 1.1807 23 1 -0.4850 0.8400 -0.0004 24 1 3.8746 -0.6798 0.8911 25 1 3.8752 -0.6802 -0.8888 26 1 3.6586 -3.1507 -0.8875 27 1 3.6580 -3.1496 0.8925 28 1 5.9716 -1.7962 0.0019 29 1 7.9933 -2.9633 0.0028 30 1 9.2501 -8.3891 0.0055 31 1 10.0961 -3.0615 -0.4213 32 1 12.2723 -5.3181 -0.3316 33 1 12.5631 -3.5475 -0.7578 34 1 11.7066 -2.8563 1.5277 35 1 11.4155 -4.6267 1.9544 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345106949.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:45 Heat of formation + Delta-G solvation = 15.146693 kcal Electronic energy + Delta-G solvation = -18765.983777 eV Core-core repulsion = 15697.778721 eV Total energy + Delta-G solvation = -3068.205056 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.70154 -40.73632 -37.33574 -36.98482 -36.05009 -34.83906 -32.18990 -30.12524 -27.04906 -25.84787 -23.97428 -23.16557 -22.91800 -22.49971 -20.65206 -19.90692 -19.00849 -18.56698 -17.74129 -17.08379 -16.71115 -16.23322 -15.90349 -15.67322 -15.46783 -15.24826 -14.94631 -14.80267 -14.60237 -13.36953 -13.26440 -13.11489 -12.44669 -12.40346 -12.33406 -12.23355 -12.15168 -11.76459 -11.69801 -11.64475 -11.46445 -11.23824 -10.78660 -10.41178 -10.31987 -9.85219 -8.97657 -8.29431 -6.36932 -0.21130 0.19074 0.86053 1.40059 1.42563 1.44934 1.53449 1.60166 2.01853 2.37272 3.04372 3.06002 3.10429 3.37854 3.74758 3.97682 4.17748 4.29103 4.34424 4.43087 4.47256 4.74081 4.83373 4.85439 4.95911 5.03948 5.19039 5.30764 5.35037 5.35687 5.40625 5.61232 5.67159 6.22354 6.69423 6.77771 6.79508 7.22280 7.27942 8.87302 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.027375 B = 0.003415 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.572254 B = 8197.475941 C = 9131.454532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.004 3.996 3 Si 0.958 3.042 4 H -0.266 1.266 5 H -0.289 1.289 6 H -0.235 1.235 7 C -0.539 4.539 8 H 0.030 0.970 9 C -0.013 4.013 10 C 0.163 3.837 11 N -0.716 5.716 12 C 0.691 3.309 13 O -0.599 6.599 14 N -0.627 5.627 15 C 0.011 3.989 16 S 0.210 5.790 17 C -0.034 4.034 18 N -0.466 5.466 19 C 0.030 3.970 20 C -0.101 4.101 21 C -0.155 4.155 22 C -0.158 4.158 23 H 0.268 0.732 24 H 0.039 0.961 25 H 0.037 0.963 26 H 0.048 0.952 27 H 0.048 0.952 28 H 0.415 0.585 29 H 0.430 0.570 30 H 0.227 0.773 31 H 0.131 0.869 32 H 0.090 0.910 33 H 0.115 0.885 34 H 0.119 0.881 35 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.726 -6.791 0.316 26.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.193 4.193 3 Si 0.781 3.219 4 H -0.191 1.191 5 H -0.215 1.215 6 H -0.157 1.157 7 C -0.577 4.577 8 H 0.049 0.951 9 C -0.051 4.051 10 C 0.039 3.961 11 N -0.370 5.370 12 C 0.391 3.609 13 O -0.478 6.478 14 N -0.277 5.277 15 C -0.208 4.208 16 S 0.460 5.540 17 C -0.332 4.332 18 N -0.179 5.179 19 C -0.106 4.106 20 C -0.121 4.121 21 C -0.192 4.192 22 C -0.196 4.196 23 H 0.076 0.924 24 H 0.057 0.943 25 H 0.056 0.944 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.252 0.748 29 H 0.270 0.730 30 H 0.244 0.756 31 H 0.149 0.851 32 H 0.109 0.891 33 H 0.133 0.867 34 H 0.137 0.863 35 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 24.479 -8.148 0.319 25.801 hybrid contribution 0.342 1.828 -0.036 1.860 sum 24.821 -6.320 0.282 25.614 Atomic orbital electron populations 1.70074 1.08637 1.28429 1.51990 1.26075 0.95653 1.03876 0.93723 0.85550 0.79732 0.77368 0.79279 1.19063 1.21505 1.15748 1.21239 0.91556 0.93410 1.51498 0.95123 1.19656 0.94355 0.92764 0.98281 1.21015 0.75949 0.98605 1.00488 1.45027 1.07730 1.06692 1.77554 1.16098 0.81397 0.85058 0.78390 1.90867 1.67222 1.31201 1.58552 1.41646 1.04072 1.06832 1.75146 1.23286 0.94112 0.92079 1.11317 1.85269 1.07307 0.93589 1.67833 1.28914 0.93410 1.04944 1.05954 1.66101 1.37249 0.99186 1.15364 1.19402 0.88990 0.92813 1.09403 1.20499 0.90338 0.94912 1.06386 1.22944 0.93711 1.03082 0.99458 1.23011 1.01731 1.03463 0.91388 0.92353 0.94306 0.94432 0.93318 0.93321 0.74797 0.72952 0.75647 0.85077 0.89114 0.86718 0.86328 0.90065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.39 13.96 21.45 0.30 -58.09 16 2 C 0.00 0.21 5.47 84.65 0.46 0.68 16 3 Si 0.96 40.97 27.47 68.60 1.88 42.86 16 4 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 5 H -0.29 -12.43 7.11 99.48 0.71 -11.72 16 6 H -0.23 -8.76 6.54 99.48 0.65 -8.11 16 7 C -0.54 -29.73 9.66 25.60 0.25 -29.48 16 8 H 0.03 1.90 7.99 -2.91 -0.02 1.88 16 9 C -0.01 -0.53 4.16 29.85 0.12 -0.41 16 10 C 0.16 6.19 5.61 86.38 0.48 6.67 16 11 N -0.72 -20.33 5.56 -478.51 -2.66 -22.99 16 12 C 0.69 20.73 8.53 179.05 1.53 22.26 16 13 O -0.60 -22.50 13.97 -4.03 -0.06 -22.56 16 14 N -0.63 -14.23 5.42 -319.51 -1.73 -15.96 16 15 C 0.01 0.28 7.18 82.52 0.59 0.87 16 16 S 0.21 5.24 20.46 -56.49 -1.16 4.08 16 17 C -0.03 -0.69 12.21 130.67 1.60 0.91 16 18 N -0.47 -10.89 9.83 -191.09 -1.88 -12.77 16 19 C 0.03 0.67 6.39 41.66 0.27 0.94 16 20 C -0.10 -1.69 5.82 -11.54 -0.07 -1.76 16 21 C -0.15 -2.31 10.09 30.59 0.31 -2.00 16 22 C -0.16 -2.31 10.23 30.59 0.31 -1.99 16 23 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 24 H 0.04 1.52 7.20 -2.39 -0.02 1.50 16 25 H 0.04 1.45 7.57 -2.39 -0.02 1.43 16 26 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 27 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 28 H 0.42 8.64 8.49 -92.71 -0.79 7.85 16 29 H 0.43 6.47 7.73 -92.71 -0.72 5.75 16 30 H 0.23 2.83 8.06 -2.91 -0.02 2.81 16 31 H 0.13 1.62 7.39 -2.39 -0.02 1.60 16 32 H 0.09 1.65 7.73 -2.39 -0.02 1.63 16 33 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.12 1.21 8.14 -2.38 -0.02 1.19 16 35 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -72.14 313.96 0.13 -72.01 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: -0.42 Total: 16.73 kcal Atomic # 6 Polarization: -9.17 SS G_CDS: 5.86 Total: -3.31 kcal Atomic # 7 Polarization: -103.84 SS G_CDS: -5.97 Total: -109.81 kcal Atomic # 8 Polarization: -22.50 SS G_CDS: -0.06 Total: -22.56 kcal Atomic # 14 Polarization: 40.97 SS G_CDS: 1.88 Total: 42.86 kcal Atomic # 16 Polarization: 5.24 SS G_CDS: -1.16 Total: 4.08 kcal Total: -72.14 0.13 -72.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345106949.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.156 kcal (2) G-P(sol) polarization free energy of solvation -72.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds